The extraction of chemical entities from documents such as patents and publications has been pursued for a number of years. We wish to report on ChemMantis, an integrated system for chemistry-based entity extraction and document mark-up enabling access to the rich resource of online chemistry know as ChemSpider. We will discuss the development of the platform from its inception as a series of dictionaries to the integration of an entity extraction algorithm and its expansion to a public deposition and publishing platform for chemistry. Chemistry articles can now be deposited, marked-up and exposed to the public within a few minutes in many cases making it an ideal platform for communicating research and providing integrated access to data sources including PubChem, ChEBI, Wikipedia and Entrez.

1. Building an integrated system for chemistry markup and online publishing integrated to online chemistry resources

4. Reflect

5. Entity-Extraction, Mark-up, Annotate

6. Entity-Extraction, Mark-up, Annotate

7. And linked to STITCH…

8. Success Depends on Dictionaries

9. Concept Web Alliance, Knewco, Others

10. NextBio and ScienceDirect

12. Nature Chemistry Compound Pages

13. Project Prospect

15. ChemMantis and CJOC

16. Name-Structure Pairs

18. Manual Curation is Necessary

19. Deposit Structures

22. Build Dictionaries

23. Species – linked to Wikipedia

29. SureChem Services

30. Pubmed Articles Linked

32. Org Prep Daily (Blog)

33. Molbank (Open Access Journal)

34. Synthetic Pages (Website)

35. RSC Supplementary Info

36. RSC Supplementary Info

38. Online Journals and Live Data

41. Thank you [email_address] Twitter: ChemSpiderman www.chemspider.com/blog