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Virtual Drug Development in Southern
California, A Pre-Clinical Focus
in vitro tests to support IND submissions
David Johnson, Ph.D.
Director, DMPK
MicroConstants, Inc.
(858) 652-4600
www.microconstants.com
May 9, 2013
Development of a Successful
New Drug
Source: PMA
Drug Development Path/
Lifecycle
Discovery
Lead
Selection
Optimization I II III
Clinical Development
Preclinical
Development
Development
candidate
IND FIH NDA Marketed
drug
Ideal Drug Candidate Wish List
from a DMPK Perspective
• Good aqueous solubility for i.v. formulation and oral absorption
• High bioavailability and acceptable PK characteristics for intended route/dosing
regimen
• Small first-pass effect
• “Balanced” clearance:
– Renal excretion of intact drug
– Biliary elimination of intact drug
– Metabolism to limited number of products
• Moderate plasma protein binding (<90%)
• Minimal P-450 inhibitory potential (especially mechanism-based)
• Metabolism should be catalyzed by multiple CYP enzymes, e.g., CYP3A4, 2C9,
1A2
• Metabolism should not depend largely on polymorphically-expressed P-450,
e.g., CYP2D6, 2C9, 2C19
• Key human metabolites also present in tox species
Source: Carlson, Tim (Amgen). In vitro ADME Assays & Techniques,
CACO/BAADME Workshop, March 28, 2013.
ADME Issues & in vitro Studies
to Address Them
Small Molecule ADME Issues
Absorption Clearance/Metabolism Distribution
Poor membrane permeability
Extensive P-glycoprotein efflux
Poor physicochemical properties
Extensive gut metabolism
Extensive hepatic metabolism
Instability in biological fluids
Enzyme induction or inhibition
Rapid transporter-mediated
excretion
Extensive protein binding
Inadequate CNS penetration
• Caco-2 cell permeability
• MDCK cell permeability
• Caco-2 P-gp screen
• Inhibition of P-gp activity
• Solubility, log P, log D, pKa
• Caco-2 stability
• Microsome stability
• Microsome stability
• S9 stability
• Hepatocyte/Tissue slices
• Preliminary metabolite ID
• Plasma stability
• Promoter/reporter gene/cell-based
experiments
• P450 mRNA, protein or activity
measurements (treated hepatocytes)
• Enzyme-specific inhibition studies
• Renal/biliary transporter activity
• Ultrafiltration/Ultracentrifugation
• Equilibrium dialysis
• In situ perfusion studies
• Brain/CSF collection
Source: Jang, Harris, and Lau,
2001, Medicinal Research
Reviews 21:382
Primary Components of an
IND Application
The IND application must contain information in three broad areas:
•Animal Pharmacology and Toxicology Studies - Preclinical data to permit an
assessment as to whether the product is reasonably safe for initial testing in humans.
Also included are any previous experience with the drug in humans (often foreign use).
•Manufacturing Information - Information pertaining to the composition, manufacturer,
stability, and controls used for manufacturing the drug substance and the drug product.
This information is assessed to ensure that the company can adequately produce and
supply consistent batches of the drug.
•Clinical Protocols and Investigator Information - Detailed protocols for proposed
clinical studies to assess whether the initial-phase trials will expose subjects to
unnecessary risks. Also, information on the qualifications of clinical investigators--
professionals (generally physicians) who oversee the administration of the experimental
compound--to assess whether they are qualified to fulfill their clinical trial duties. Finally,
commitments to obtain informed consent from the research subjects, to obtain review of
the study by an institutional review board (IRB), and to adhere to the investigational new
drug regulations.
Source: http://www.fda.gov/cder/Regulatory/applications/ind_page_1.htm
DMPK Studies Typically Included
in IND Submissions
• Plasma Protein Binding
– Used to assess free fraction
• Drug-Drug Interaction (DDI) Studies
– CYP inhibition / induction
– Reaction phenotyping
– Transporter inhibition / substrate
• Metabolite Profiling

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Presentation by MicroConstants at BIOCOM CRO event May 2013: Virtual Drug Development in Southern California: A Pre-Clinical Focus

  • 1. Virtual Drug Development in Southern California, A Pre-Clinical Focus in vitro tests to support IND submissions David Johnson, Ph.D. Director, DMPK MicroConstants, Inc. (858) 652-4600 www.microconstants.com May 9, 2013
  • 2. Development of a Successful New Drug Source: PMA
  • 3. Drug Development Path/ Lifecycle Discovery Lead Selection Optimization I II III Clinical Development Preclinical Development Development candidate IND FIH NDA Marketed drug
  • 4. Ideal Drug Candidate Wish List from a DMPK Perspective • Good aqueous solubility for i.v. formulation and oral absorption • High bioavailability and acceptable PK characteristics for intended route/dosing regimen • Small first-pass effect • “Balanced” clearance: – Renal excretion of intact drug – Biliary elimination of intact drug – Metabolism to limited number of products • Moderate plasma protein binding (<90%) • Minimal P-450 inhibitory potential (especially mechanism-based) • Metabolism should be catalyzed by multiple CYP enzymes, e.g., CYP3A4, 2C9, 1A2 • Metabolism should not depend largely on polymorphically-expressed P-450, e.g., CYP2D6, 2C9, 2C19 • Key human metabolites also present in tox species Source: Carlson, Tim (Amgen). In vitro ADME Assays & Techniques, CACO/BAADME Workshop, March 28, 2013.
  • 5. ADME Issues & in vitro Studies to Address Them Small Molecule ADME Issues Absorption Clearance/Metabolism Distribution Poor membrane permeability Extensive P-glycoprotein efflux Poor physicochemical properties Extensive gut metabolism Extensive hepatic metabolism Instability in biological fluids Enzyme induction or inhibition Rapid transporter-mediated excretion Extensive protein binding Inadequate CNS penetration • Caco-2 cell permeability • MDCK cell permeability • Caco-2 P-gp screen • Inhibition of P-gp activity • Solubility, log P, log D, pKa • Caco-2 stability • Microsome stability • Microsome stability • S9 stability • Hepatocyte/Tissue slices • Preliminary metabolite ID • Plasma stability • Promoter/reporter gene/cell-based experiments • P450 mRNA, protein or activity measurements (treated hepatocytes) • Enzyme-specific inhibition studies • Renal/biliary transporter activity • Ultrafiltration/Ultracentrifugation • Equilibrium dialysis • In situ perfusion studies • Brain/CSF collection Source: Jang, Harris, and Lau, 2001, Medicinal Research Reviews 21:382
  • 6. Primary Components of an IND Application The IND application must contain information in three broad areas: •Animal Pharmacology and Toxicology Studies - Preclinical data to permit an assessment as to whether the product is reasonably safe for initial testing in humans. Also included are any previous experience with the drug in humans (often foreign use). •Manufacturing Information - Information pertaining to the composition, manufacturer, stability, and controls used for manufacturing the drug substance and the drug product. This information is assessed to ensure that the company can adequately produce and supply consistent batches of the drug. •Clinical Protocols and Investigator Information - Detailed protocols for proposed clinical studies to assess whether the initial-phase trials will expose subjects to unnecessary risks. Also, information on the qualifications of clinical investigators-- professionals (generally physicians) who oversee the administration of the experimental compound--to assess whether they are qualified to fulfill their clinical trial duties. Finally, commitments to obtain informed consent from the research subjects, to obtain review of the study by an institutional review board (IRB), and to adhere to the investigational new drug regulations. Source: http://www.fda.gov/cder/Regulatory/applications/ind_page_1.htm
  • 7. DMPK Studies Typically Included in IND Submissions • Plasma Protein Binding – Used to assess free fraction • Drug-Drug Interaction (DDI) Studies – CYP inhibition / induction – Reaction phenotyping – Transporter inhibition / substrate • Metabolite Profiling