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A Report on Connotea

Ian Mulvany, Connotea Product Development Manager,
              Nature Publishing Group
Thank you for you
   Attention
Nature Web Publishing
       group
Nature Web Publishing
       group




                 OTMI
Second Life Nature
History behind
            Connotea

               Deliciously scientific




Timo Hannay, Ben Lund, Martin Flack (Neo Reality)
Social Bookmarking
• del.icio.us founded by Joshua Schachter in 2003,
    acquired by Yahoo in Dec, 2005
•   Key features of this service:
    • save bookmarks online
    • add tags
    • simple url structure to retrieve data via tags
    • tags provide folksonomy over bookmarks
    • many users allow searching links by popularity
Examples of del.icio.us url’s
http://www.del.icio.us/popular/Elsevier
http://www.del.icio.us/popular/
http://www.del.icio.us/tag/conference
http://www.del.icio.us/tag/conference
http://www.del.icio.us/tag/conference   Title
http://www.del.icio.us/tag/conference   Title
http://www.del.icio.us/tag/conference   Title
                                           Time
http://www.del.icio.us/tag/conference   Title
                                           Time
http://www.del.icio.us/tag/conference   Title
                                           Time


                                           Popularity
http://www.del.icio.us/tag/conference   Title
                                           Time


                                           Popularity
http://www.del.icio.us/tag/conference   Title
                                           Time


                                           Popularity




                                            Poster
http://www.del.icio.us/tag/conference   Title
                                           Time


                                           Popularity




                                            Poster
http://www.del.icio.us/tag/conference   Title
                                           Time


                                           Popularity




                                            Poster



                      Tags
Academic Bookmarking
 Like del.icio.us but with::
                  Citation data
              Private groups/posts
       Import/Export for article writing
Title
Title
Title

Date
Title

Date
Title
Author   Date
Title
Author   Date
Title
      Author   Date




PMID/DOI
perl
mod_perl
Template Toolkit
MySQL
Open Source, GPL2.5 v 1.8.1
web1.75 application
Amazon.pm          DOI.pm         LivingReviews.pm
PLoS.pm            RIS.pm         SpamDNSBL.pm
autodiscovery.pm
BibTeX.pm          Dlib.pm        NASA.pm
PMC.pm             Scitation.pm   Springer.pm
blog.pm
Blackwell.pm       Highwire.pm    NPG.pm
PNAS.pm            Self.pm        Wiley.pm
ePrints.pm
BmcPdf.pm          Hubmed.pm       OUP.pm
Pubmed.pm          Simple.pm       arXiv.pm
http://www.connotea.org/user/IanMulvany

http://www.connotea.org/users/tag/scifoo


http://www.connotea.org/user/IanMulvany/tag/scifoo


http://www.connotea.org/user/IanMulvany/tag/science


http://www.connotea.org/user/IanMulvany/tag/
            science2.0+citation
http://www.connotea.org/data/user/IanMulvany

  http://www.connotea.org/data/users/tag/scifoo


  http://www.connotea.org/data/user/IanMulvany/tag/
                       scifoo

  http://www.connotea.org/data/user/IanMulvany/tag/
                      science

http://www.connotea.org/data/user/IanMulvany/tag/
science2.0+citation
http://www.connotea.org/rss/user/IanMulvany

  http://www.connotea.org/rss/users/tag/scifoo


http://www.connotea.org/rss/user/IanMulvany/tag/scifoo

  http://www.connotea.org/rss/user/IanMulvany/tag/
                     science

http://www.connotea.org/rss/user/IanMulvany/tag/
science2.0+citation
- User
- Date
- Bookmarks        - DOI/PMID
- URI              - Citation Data
-Tag
- Edit
- Free Text Search
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”



        Java
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”



        Java
                               Python
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”



        Java
                               Python

                                Perl
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”



        Java
                               Python
         Ruby
                                Perl
RDF         HTML

      RSS
images via flickr: Barry Hennessy, Hettie McFarlane, wallyg
“What I keep hearing is, how can we impact factorize open science. 
Well, the answer is, you can't.  Let's stop trying to find some magic
algorithm whereby a machine tells us what quality science is.  What's
completely mad to me about this is that we already have processes to
assess science quality.  Every time you review a new student, every
time you look at a grant proposal, heck, even on the infamous tenure
committees and research assessments, a group of humans looks at a
portfolio of existing or proposed work, and decides whether it is good
enough.
So if I may modestly propose, let's continue to do that, and no one other
than journal publishers should ever look at impact factor numbers
again.  Arise, qualitative assessment, begone quantitative nonsense.”


- Richard Akerman
Citation Analysis?
People have personal search algorithms, some
              good some bad

 Social bookmarking sites are often write only

 By making collections public and tagged you
            provide a resource

 For example I read what my boss is tagging

This is kind of an orthogonal use case for these
 kinds of services, even before we add in more
               complex algorithms
Collaboration
Serendipidous discovery
         Storage
    Manage (tagging)
   Recommendations
      (algorithmic)
Don’t want to give a false
         positive
3rd Party Tools
http://mekentosj.com/
http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
http://apps.similette.com/multiguise/

http://www.itfutures.ed.ac.uk/robert_muetzelfeldt_synopsis.htm
http://www.connotea.org/wiki/User:MrED
http://www.connotea.org/wiki/EntityDescriber

http://i9606.blogspot.com/2007/08/connotea-semantic-web-ed.html
http://www.connotea.org/wiki/User:MrED
http://www.connotea.org/wiki/EntityDescriber

http://i9606.blogspot.com/2007/08/connotea-semantic-web-ed.html
http://www.connotea.org/wiki/User:MrED
http://www.connotea.org/wiki/EntityDescriber

http://i9606.blogspot.com/2007/08/connotea-semantic-web-ed.html
http://www.connotea.org/
            blog


http://www.connotea.org/wiki/
        ConnoteaTools
Stats
Total number of verified email accounts




Number of people adding bookmarks
Total number of tags




Total number of unique tags
11032
Current library usage
OpenId               Better Tagging
OpenAuth             Interface Interface
OpenSocial           More parsers
API Extension        Recommender 2.0
Nature Integration   Citation Manager
Graph Analysis?




                  Text
                   Text
                    Text
Where’s my
          Bibliography?
COINS extension?
ATOM feed?
SSE?
OAI-ORE CIO
or Something entirely new with a new
acronym to contend with?
The End
<?xml version=quot;1.0quot;?>
<rdf:RDF
 xmlns:rdf=quot;http://www.w3.org/1999/02/22-rdf-syntax-ns#quot;
 xmlns:rdfs=quot;http://www.w3.org/2000/01/rdf-schema#quot;
 xmlns:dc=quot;http://purl.org/dc/elements/1.1/quot;
 xmlns:dcterms=quot;http://purl.org/dc/terms/quot;
 xmlns:prism=quot;http://prismstandard.org/namespaces/1.2/basic/quot;
 xmlns:foaf=quot;http://xmlns.com/foaf/0.1/quot;
 xmlns=quot;http://www.connotea.org/2005/01/schema#quot;>
 <Post rdf:about=quot;http://www.connotea.org/user/IanMulvany/uri/
1f079ccb3687202fdaa517d5245b5588quot;>
   <title>First SciFoo Lives On Session</title>
   <dc:subject>secondlife</dc:subject>
   <dc:subject>scifoo</dc:subject>
   <userBookmarkID>576893</userBookmarkID>
   <dc:creator>IanMulvany</dc:creator>
   <private>0</private>
   <created>2007-08-21T15:46:38Z</created>
   <updated>2007-08-21T15:46:38Z</updated>
   <uri>
    <dcterms:URI rdf:about=quot;http://usefulchem.blogspot.com/2007/08/first-scifoo-lives-on-
session.htmlquot;>
      <dc:title>Useful Chemistry: First SciFoo Lives On Session</dc:title>
      <link>http://usefulchem.blogspot.com/2007/08/first-scifoo-lives-on-session.html</link>
      <hash>1f079ccb3687202fdaa517d5245b5588</hash>
      <citation>
        <rdf:Description>
         <citationID>582573</citationID>
         <prism:title>First SciFoo Lives On Session</prism:title>
         <foaf:maker>
           <foaf:Person>
            <foaf:name>Jean-Claude Bradley</foaf:name>
           </foaf:Person>
         </foaf:maker>
         <dc:date>2007-08-20T00:00:00Z</dc:date>
         <journalID>546903</journalID>
         <prism:publicationName>Useful Chemistry</prism:publicationName>
        </rdf:Description>
      </citation>
    </dcterms:URI>
   </uri>
 </Post>
</rdf:RDF>hyperlink

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