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agINFRA - Elements for an Information
Infrastructure in Agricultural Research and
Innovation

        Presentation at CAAS AII, Beijing, China 2012-09-27



       Dr. Johannes Keizer
       Office of Knowledge Exchange, Research and Extension
       Food and Agriculture Organization of the UN




                         Presentations by Johannes Keizer is licensed under a Creative Commons Attribution-
                                          NonCommercial-ShareAlike 3.0 Unported License.
Agriculture Information on the web

•   stats
•   news
•   gene banks
•   gis data
•   blogs,
•   journals
•   open archives
•   raw data
•   technologies
•   learning objects
•   ………..


    http://aims.fao.org   johannes keizer
..at the end, it is still like this




 http://aims.fao.org   johannes keizer
..we dream of




 http://aims.fao.org   johannes keizer
…but how to?
•   stats
•   gene banks
•   gis data
•   blogs,
•   journals
•   open archives
•   raw data
•   technologies
•   learning objects
•   ………..



    http://aims.fao.org   johannes keizer
....some Analysis




 http://aims.fao.org   johannes keizer
Mechanisms
      Political awareness and institutional
        readiness
          • CIARD      http://www.ciard.net


      Community of practice and collaboration
        platform
          • AIMS (http://aims.fao.org)


      Implementation mechanisms
          • Collaborations with other institutions
          • Funded projects
 http://aims.fao.org      johannes keizer
http://aims.fao.org   johannes keizer
http://aims.fao.org   johannes keizer
Elements for an information infrastructure


VocabServer                     RING                 Tools
     VocBench
                                                       LOD
concepts and entities   routemap to information   enabled software
       triples            nodes and gateways




      Cloud               Data Services           LOD Generator

   storage for RDF      Portals,Webservices +          triplifier,
                         APIs to triple stores    concept and entity
        triples
                                                      identifier


 http://aims.fao.org    johannes keizer
What has been done sofar?

                       •       A lot!
                           •      Vocbench 1.0 in production
                           •      AGROVOC extensively mapped
                           •      AGROVOC and AGROVOC
                                  mappings published as linked
                                  open data
                           •      AGROVOC URI delivered through
                                  efficient web services
                           •      Vocbench 2.0 nearly released
                           •      UALS possible
 http://aims.fao.org       johannes keizer
Demo
 AGROVOC LOD
 http://aims.fao.org/aos/agrovoc/c_7825

 VocBench
 http://202.73.13.50:55481/vocbenchv1.3i/
To do!

                       •       A lot!
                           •      Vocbench 2.0 nearly
                                  released
                           •      United Agricultural
                                  Language System is
                                  possible



 http://aims.fao.org       johannes keizer
What has been done sofar?

      RING                •       Something!
routemap to information
                              •      RING concept embraced by
  nodes and gateways                 CIARD and GFAR
                              •      ring.ciard.net active as a registry
                                     of 365 resources from 145
                                     providers
                              •      RDF backbone in place
                              •




   http://aims.fao.org        johannes keizer
http://ring.ciard.net/




 http://aims.fao.org   johannes keizer   15
To do......

      RING                A lot
routemap to information   •      Make it a machine
  nodes and gateways
                                 readable switchboard to
                                 access data!




   http://aims.fao.org    johannes keizer
What has been done sofar?

    Tools              •       Something!
      LOD                  •      Agridrupal : creating semantically
 enabled software
                                  rich web applications
                           •      AgriOceanDspace: creating
                                  semantically rich repositories
                           •      Tools needed for other than
                                  textual data
                           •      Cloudservices needed for data
                                  processing


 http://aims.fao.org       johannes keizer
http://aims.fao.org/tools/agridrupal




 http://aims.fao.org   johannes keizer   18
http://aims.fao.org/agriocean-dspace




 http://aims.fao.org   johannes keizer   19
To do!

    Tools
      LOD
                       A Lot!
 enabled software      •      Tools needed for other than
                              textual data
                       •      Cloudservices needed for
                              data processing




 http://aims.fao.org   johannes keizer
What has been done sofar?

      Cloud               •       Experiments!
                              •       Experiments ongoing using
storage for RDF triples
                                  •       Different triple stores
                                  •       agINFRA grid services
                                  •       Commercial cloud services
                              •       Efficient systems for secure storage
                                      and processing of very large triple
                                      bases in a flexible environment
                              •




   http://aims.fao.org        johannes keizer
What has been done sofar?

 Data Services            •       Something!
Portals, Webservices          •      “openAGRIS” released and in
+ APIs to triple stores
                                     continuous development
                              •      Some other platforms (VOA3R,
                                     organic Edunet, Science Gateway
                                     from AgINFRA partners)
                              •      Set of APIS and webservices that
                                     work on agINFRA triple stores
                              •




   http://aims.fao.org        johannes keizer
Data Services




 http://aims.fao.org   johannes keizer
Demo

 OpenAgris
 http://agris.fao.org/openagris/search.do?recordID=CN9682184




                                                               2
What has been done sofar?

LOD Generator          •       Experiments!
      triplifier,          •       Experiments ongoing using
 concept and entity
     identifier                •       Automatic annotation of unstructured web
                                       material with AGROVOC URIs
                               •       Development of wrappers for unstructured
                                       and semistructured web applications
                           •       Set of wrappers for widely used
                                   wikis, cms, etc on the Internet
                           •       “openCalais like services to annotate
                                   unstructured material from the web




 http://aims.fao.org       johannes keizer
LOD Generator: agroTagger

  LOD Generator
       triplifier,
  concept and entity
      identifier




 http://aims.fao.org   johannes keizer
Lod Generator: process
LOD Generator
     triplifier,
concept and entity
    identifier




  http://aims.fao.org   johannes keizer
Elements for an information infrastructure


VocabServer                     RING                 Tools
     VocBench
                                                       LOD
concepts and entities   routemap to information   enabled software
       triples            nodes and gateways




      Cloud               Data Services           LOD Generator

   storage for RDF        Webservices + APIs           triplifier,
                            to triple stores      concept and entity
        triples
                                                      identifier


 http://aims.fao.org    johannes keizer
http://aims.fao.org   johannes keizer
agINFRA aims not to build one
 Infrastructure, but to
 facilitate many
 infrastructures,
or better to create elements
 for interoperable
 infrastructures
..and more

 http://agris.fao.org/
 http://aims.fao.org
 http://ring.ciard.net
 http://www.ciard.net


        Credits: John Ferreira, Imma Subirats, Yves Jaques,
           Valeria Pesce, Fabrizio Celli, Ahsan Morshed,
           Caterina Caracciolo, Dickson Lukose, Gudrun
           Johannsen, Stefano Anibaldi, Armando Stellato,
           Tom Baker and many others

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2012 09 caas-ag_infra

  • 1. agINFRA - Elements for an Information Infrastructure in Agricultural Research and Innovation Presentation at CAAS AII, Beijing, China 2012-09-27 Dr. Johannes Keizer Office of Knowledge Exchange, Research and Extension Food and Agriculture Organization of the UN Presentations by Johannes Keizer is licensed under a Creative Commons Attribution- NonCommercial-ShareAlike 3.0 Unported License.
  • 2. Agriculture Information on the web • stats • news • gene banks • gis data • blogs, • journals • open archives • raw data • technologies • learning objects • ……….. http://aims.fao.org johannes keizer
  • 3. ..at the end, it is still like this http://aims.fao.org johannes keizer
  • 4. ..we dream of http://aims.fao.org johannes keizer
  • 5. …but how to? • stats • gene banks • gis data • blogs, • journals • open archives • raw data • technologies • learning objects • ……….. http://aims.fao.org johannes keizer
  • 7. Mechanisms  Political awareness and institutional readiness • CIARD http://www.ciard.net  Community of practice and collaboration platform • AIMS (http://aims.fao.org)  Implementation mechanisms • Collaborations with other institutions • Funded projects http://aims.fao.org johannes keizer
  • 8. http://aims.fao.org johannes keizer
  • 9. http://aims.fao.org johannes keizer
  • 10. Elements for an information infrastructure VocabServer RING Tools VocBench LOD concepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Portals,Webservices + triplifier, APIs to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
  • 11. What has been done sofar? • A lot! • Vocbench 1.0 in production • AGROVOC extensively mapped • AGROVOC and AGROVOC mappings published as linked open data • AGROVOC URI delivered through efficient web services • Vocbench 2.0 nearly released • UALS possible http://aims.fao.org johannes keizer
  • 12. Demo AGROVOC LOD http://aims.fao.org/aos/agrovoc/c_7825 VocBench http://202.73.13.50:55481/vocbenchv1.3i/
  • 13. To do! • A lot! • Vocbench 2.0 nearly released • United Agricultural Language System is possible http://aims.fao.org johannes keizer
  • 14. What has been done sofar? RING • Something! routemap to information • RING concept embraced by nodes and gateways CIARD and GFAR • ring.ciard.net active as a registry of 365 resources from 145 providers • RDF backbone in place • http://aims.fao.org johannes keizer
  • 16. To do...... RING A lot routemap to information • Make it a machine nodes and gateways readable switchboard to access data! http://aims.fao.org johannes keizer
  • 17. What has been done sofar? Tools • Something! LOD • Agridrupal : creating semantically enabled software rich web applications • AgriOceanDspace: creating semantically rich repositories • Tools needed for other than textual data • Cloudservices needed for data processing http://aims.fao.org johannes keizer
  • 20. To do! Tools LOD A Lot! enabled software • Tools needed for other than textual data • Cloudservices needed for data processing http://aims.fao.org johannes keizer
  • 21. What has been done sofar? Cloud • Experiments! • Experiments ongoing using storage for RDF triples • Different triple stores • agINFRA grid services • Commercial cloud services • Efficient systems for secure storage and processing of very large triple bases in a flexible environment • http://aims.fao.org johannes keizer
  • 22. What has been done sofar? Data Services • Something! Portals, Webservices • “openAGRIS” released and in + APIs to triple stores continuous development • Some other platforms (VOA3R, organic Edunet, Science Gateway from AgINFRA partners) • Set of APIS and webservices that work on agINFRA triple stores • http://aims.fao.org johannes keizer
  • 25. What has been done sofar? LOD Generator • Experiments! triplifier, • Experiments ongoing using concept and entity identifier • Automatic annotation of unstructured web material with AGROVOC URIs • Development of wrappers for unstructured and semistructured web applications • Set of wrappers for widely used wikis, cms, etc on the Internet • “openCalais like services to annotate unstructured material from the web http://aims.fao.org johannes keizer
  • 26. LOD Generator: agroTagger LOD Generator triplifier, concept and entity identifier http://aims.fao.org johannes keizer
  • 27. Lod Generator: process LOD Generator triplifier, concept and entity identifier http://aims.fao.org johannes keizer
  • 28. Elements for an information infrastructure VocabServer RING Tools VocBench LOD concepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
  • 29. http://aims.fao.org johannes keizer
  • 30. agINFRA aims not to build one Infrastructure, but to facilitate many infrastructures, or better to create elements for interoperable infrastructures
  • 31. ..and more  http://agris.fao.org/  http://aims.fao.org  http://ring.ciard.net  http://www.ciard.net Credits: John Ferreira, Imma Subirats, Yves Jaques, Valeria Pesce, Fabrizio Celli, Ahsan Morshed, Caterina Caracciolo, Dickson Lukose, Gudrun Johannsen, Stefano Anibaldi, Armando Stellato, Tom Baker and many others