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Building open source safety-critical
medical device platforms and
Meaningful Use EHR gateways
Inherent connectivity creates significant
opportunities in medical science
NETSPECTIVE

Who is Shahid?
• 20+ years of software engineering and
multi-site healthcare system deployment
experience
• 12+ years of healthcare IT and medical
devices experience (blog at
http://healthcareguy.com)
• 15+ years of technology management
experience (government, non-profit,
commercial)
• 10+ years as architect, engineer, and
implementation manager on various EMR
and EHR initiatives (commercial and nonprofit)
www.netspective.com

Author of Chapter 13, “You’re
the CIO of your Own Office”
2
NETSPECTIVE

What’s this talk about?
Health IT / MedTech Landscape

Key Takeaways

• Data has potential to solve
some hard healthcare
problems and change how
medical science is done.
• The government is paying for
the collection of clinical data
(Meaningful Use or “MU”).
• All the existing MU incentives
promote the wrong kinds of
data collection: unreliable,
slow, and error prone.

• Medical devices are the best
sources of quantifiable,
analyzable, and reportable
clinical data.
• New devices must be
designed and deployed to
support inherent connectivity.
• OSS is ideal for next
generation and innovative
medical devices and
gateways

www.netspective.com

3
NETSPECTIVE

What if we had access to all this data?
• Cardiac output
monitors
• Defibrillators
• Fetal monitors
• Electrocardiographs
• Infant incubators
• Infusion pumps
• Intelligent medical
device hubs
• Interactive infusion
pumps
• MRI machines
• X-Ray machines
• Physiologic monitors
• Ventilators
• Vital signs monitors
Source: Jan Whittenber, Philips Medical Systems
www.netspective.com

4
NETSPECTIVE

What problems can data help solve?
Cost per patient per
procedure / treatment
going up but without
ability to explain why

Cost for same
procedure / treatment
plan highly variable
across localities

Unable to compare
drug efficacy across
patient populations

Unable to compare
health treatment
effectiveness across
patients

Variability in fees and
treatments promotes
fraud

Lack of visibility of
entire patient record
causes medical errors

www.netspective.com

5
NETSPECTIVE

Data changes the questions we ask

Simple visual facts
www.netspective.com

Complex visual facts

Complex computable
facts
6
NETSPECTIVE

Data can change medical science
The old way

The new way

Identify problem

Identify data

Ask questions

Generate questions

Collect data

Mine data

Answer questions

Answer questions

www.netspective.com

7
NETSPECTIVE

Evidence-based medicine is our goal

Eminence

Evidence

• Trust me

• Prove it

www.netspective.com

8
NETSPECTIVE

Types of medical data we care about
Phenome

Genome

Proteome

Phenotype is a
composite of our
observable
characteristics or
traits

Genotype is the
entirety of our
hereditary
information (DNA,
RNA, etc.)

Proteome is our set
of proteins
expressed by our
genome and
changes regularly
over time

This is what we’ve
been studying for
centuries

Genetics is the
study of the
genome

Proteomics is the
study of the
proteome

www.netspective.com

9
NETSPECTIVE

Unstructured patient data sources
Patient

Source

Self reported by
patient

Health
Professional
Observations by
HCP

Labs &
Diagnostics
Computed from
specimens

Errors

High

Medium

Slow

Slow

Low

Medium

Megabytes

Megabytes

Megabytes

Data type

PDFs, images

PDFs, images

PDFs, images

Availability

Common

Common

Common

Computed from
specimens

High

Data size

Computed realtime from patient

Medium

Reliability

Biomarkers /
Genetics

Low

Time

Medical Devices

www.netspective.com

Uncommon

Uncommon

10
NETSPECTIVE

Structured patient data sources
Patient

Source

Self reported by
patient

Health
Professional
Observations by
HCP

Labs &
Diagnostics
Specimens

Medical Devices
Real-time from
patient

Biomarkers /
Genetics
Specimens

Errors

High

Medium

Low

Low

Low

Time

Slow

Slow

Medium

Fast

Slow

Reliability

Low

Medium

High

High

High

Kilobytes

Kilobytes

Kilobytes

Megabytes

Gigabytes

Gigabytes

Gigabytes

Uncommon

Uncommon

Discrete size
Streaming size

Availability

www.netspective.com

Uncommon

Common

Somewhat
Common

11
NETSPECTIVE

Predictions for Device Hardware
Consumerization of Devices
Thick Devices

www.netspective.com

Thin Devices

Virtual
Devices

Sensors Only
with Built-in
Wireless
Sensors on
mobile
phones,
platforms
12
NETSPECTIVE

Predictions for Device Software
Consumerization of Apps

Software for
algorithms

www.netspective.com

Software for
functionality

Software for
connectivity

Software
only

13
NETSPECTIVE

Predictions for Device Connectivity
Consumerization of IT
Stand-alone
and
monolithic

www.netspective.com

Connectivity
within own
organization

Multi-vendor
connectivity

System of
Systems
(SoS)

14
NETSPECTIVE

Predictions for Gateways
Changes in Practice Models
Single-purpose
devices
standalone

Multi-purpose
standalone

Multi-purpose
with
documentation
connectivity

Multi-purpose
with cooperating
connectivity

Multi-purpose
with analytical
connectivity

www.netspective.com

15
NETSPECTIVE

Predictions for Self-Management
The Patient is in charge
Physicians
manage paper
“charts”
independently

Physicians and
Hospitals
manage paper
charts together

Electronic Health
Records (EHRs)
manage data in
systems

Health
Information
Exchange allow
coordination

Patients
manage their
own data

www.netspective.com

16
NETSPECTIVE

Implications
Make sure the
patient is in the
middle

Move from
hardware to
software focus

Move to
algorithms and
analytics

Understand
system of
systems (SoS)

Plan for
integration and
coordination

Start building
simulators

www.netspective.com

17
NETSPECTIVE

OSS revolution in device design
5

Device Components

• Presence
• Messaging
• Registration
• JDBC, Query
Sensors

Storage

Event Architecture

Display

6

App
#1

App
#2

Plugins

4

Location
Aware

Connectivity Layer (DDS, HTTP, XMPP)

3
Device OS
(QNX, Linux, Windows)

www.netspective.com

3rd Party Plugins

Web Server, IM Client

1

7

Plugin Container

2

Security and Management Layer

18
NETSPECTIVE

OSS revolution in device capabilities
Most obvious benefit

Least attention

Most promising
capability

www.netspective.com

19
NETSPECTIVE

OSS revolution in Gateways
Corporate Cloud (Data Center)
Development

HTTPS, SOAP, REST, HTTP
SFTP, SCP, HL7, X.12
SMTP, XMPP, DDS

Customers & Partners
Apps MQs Services

VPN

Services

Remote
Facilities

Apps

Registry

HTTPS, REST, SOAP
SFTP, SCP, HL7, X.12
SMTP, XMPP, DDS

Corporate Gateway (ESB)

Central
DB

Security

www.netspective.com

Service
DB

Management
Services

Firewall

App
DB

NOTE: Initial design is for a non-federated
backbone. If performance or security
demands require it, a federated solution will
be deployed.
20
NETSPECTIVE

OSS revolution in integration
Device
Teaming

Cloud
Services

Patient
Self-Management
Platforms

SSL VPN

Patient Context
Monitoring

Device Gateway
(DDS, XMPP, ESB)

Device
Data

Cross Device
App Workflows

Data Transformation (ESB, HL7)
Remote
Surveillance

Management
Dashboards
HIT
Integration

www.netspective.com

Report
Generation

Enterprise
Data

Alarm
Notifications

Device
Management
Inventory
21
NETSPECTIVE

OSS revolution in manageability
Security
• Is the device
authorized?

Teaming

Inventory

• Device grouping

• Where is the device?

Presence
• Is a device connected?

www.netspective.com

22
NETSPECTIVE

Key OSS questions
Will the FDA accept
open source in
safety-critical
systems?
www.netspective.com

Is open source safe
enough for medical
devices?

23
NETSPECTIVE

Simple answers
Will the FDA accept
OSS in safetycritical systems?

Is OSS safe enough
for medical
devices?

Yes

Yes
but you must prove it

www.netspective.com

24
NETSPECTIVE

It’s not as hard as we think…
• Modern real-time operating systems (open
source and commercial) are reliable for safetycritical medical-grade requirements.
• Open standards such as TCP/IP DDS, HTTP and
,
,
XMPP can pull vendors out of the 1980’s and
into the 1990’s. 
• Open source and open standards that promote
enterprise IT connectivity can pull vendors into
the 2010’s and beyond.
www.netspective.com

25
NETSPECTIVE

But it’s not easy either…we need
Risk
Assessments

Hazard Analysis

Design for
Testability

Design for
Simulations

Documentation

Traceability

Mathematical
Proofs

Determinism

Instrumentation

Theoretical
foundations

www.netspective.com

26
NETSPECTIVE

OSS / open standards applicability
Project / Standard

Subject area

D

G

Comments

Linux or Android

Operating system





Various distributions

OMG DDS (data distribution
service)

Publish and subscribe
messaging





Open standard with open source
implementations

AppWeb, Apache

Web/app server





OpenTSDB

Time series database



Open source project

Mirth

HL7 messaging engine



Built on Mule ESB

Alembic Aurion

HIE, message exchange



Successor to CONNECT

HTML5, XMPP JSON
,

Various areas





Don’t reinvent the wheel

SAML, XACML

Security and privacy





DynObj, OSGi, JPF

Plugin frameworks





www.netspective.com

Build for extensibility

27
@ShahidNShah
shahid.shah@netspective.com
www.HealthcareGuy.com

Thank you

Conclusion and Questions

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Building safety-critical medical device platforms and Meaningful Use EHR gateways

  • 1. Building open source safety-critical medical device platforms and Meaningful Use EHR gateways Inherent connectivity creates significant opportunities in medical science
  • 2. NETSPECTIVE Who is Shahid? • 20+ years of software engineering and multi-site healthcare system deployment experience • 12+ years of healthcare IT and medical devices experience (blog at http://healthcareguy.com) • 15+ years of technology management experience (government, non-profit, commercial) • 10+ years as architect, engineer, and implementation manager on various EMR and EHR initiatives (commercial and nonprofit) www.netspective.com Author of Chapter 13, “You’re the CIO of your Own Office” 2
  • 3. NETSPECTIVE What’s this talk about? Health IT / MedTech Landscape Key Takeaways • Data has potential to solve some hard healthcare problems and change how medical science is done. • The government is paying for the collection of clinical data (Meaningful Use or “MU”). • All the existing MU incentives promote the wrong kinds of data collection: unreliable, slow, and error prone. • Medical devices are the best sources of quantifiable, analyzable, and reportable clinical data. • New devices must be designed and deployed to support inherent connectivity. • OSS is ideal for next generation and innovative medical devices and gateways www.netspective.com 3
  • 4. NETSPECTIVE What if we had access to all this data? • Cardiac output monitors • Defibrillators • Fetal monitors • Electrocardiographs • Infant incubators • Infusion pumps • Intelligent medical device hubs • Interactive infusion pumps • MRI machines • X-Ray machines • Physiologic monitors • Ventilators • Vital signs monitors Source: Jan Whittenber, Philips Medical Systems www.netspective.com 4
  • 5. NETSPECTIVE What problems can data help solve? Cost per patient per procedure / treatment going up but without ability to explain why Cost for same procedure / treatment plan highly variable across localities Unable to compare drug efficacy across patient populations Unable to compare health treatment effectiveness across patients Variability in fees and treatments promotes fraud Lack of visibility of entire patient record causes medical errors www.netspective.com 5
  • 6. NETSPECTIVE Data changes the questions we ask Simple visual facts www.netspective.com Complex visual facts Complex computable facts 6
  • 7. NETSPECTIVE Data can change medical science The old way The new way Identify problem Identify data Ask questions Generate questions Collect data Mine data Answer questions Answer questions www.netspective.com 7
  • 8. NETSPECTIVE Evidence-based medicine is our goal Eminence Evidence • Trust me • Prove it www.netspective.com 8
  • 9. NETSPECTIVE Types of medical data we care about Phenome Genome Proteome Phenotype is a composite of our observable characteristics or traits Genotype is the entirety of our hereditary information (DNA, RNA, etc.) Proteome is our set of proteins expressed by our genome and changes regularly over time This is what we’ve been studying for centuries Genetics is the study of the genome Proteomics is the study of the proteome www.netspective.com 9
  • 10. NETSPECTIVE Unstructured patient data sources Patient Source Self reported by patient Health Professional Observations by HCP Labs & Diagnostics Computed from specimens Errors High Medium Slow Slow Low Medium Megabytes Megabytes Megabytes Data type PDFs, images PDFs, images PDFs, images Availability Common Common Common Computed from specimens High Data size Computed realtime from patient Medium Reliability Biomarkers / Genetics Low Time Medical Devices www.netspective.com Uncommon Uncommon 10
  • 11. NETSPECTIVE Structured patient data sources Patient Source Self reported by patient Health Professional Observations by HCP Labs & Diagnostics Specimens Medical Devices Real-time from patient Biomarkers / Genetics Specimens Errors High Medium Low Low Low Time Slow Slow Medium Fast Slow Reliability Low Medium High High High Kilobytes Kilobytes Kilobytes Megabytes Gigabytes Gigabytes Gigabytes Uncommon Uncommon Discrete size Streaming size Availability www.netspective.com Uncommon Common Somewhat Common 11
  • 12. NETSPECTIVE Predictions for Device Hardware Consumerization of Devices Thick Devices www.netspective.com Thin Devices Virtual Devices Sensors Only with Built-in Wireless Sensors on mobile phones, platforms 12
  • 13. NETSPECTIVE Predictions for Device Software Consumerization of Apps Software for algorithms www.netspective.com Software for functionality Software for connectivity Software only 13
  • 14. NETSPECTIVE Predictions for Device Connectivity Consumerization of IT Stand-alone and monolithic www.netspective.com Connectivity within own organization Multi-vendor connectivity System of Systems (SoS) 14
  • 15. NETSPECTIVE Predictions for Gateways Changes in Practice Models Single-purpose devices standalone Multi-purpose standalone Multi-purpose with documentation connectivity Multi-purpose with cooperating connectivity Multi-purpose with analytical connectivity www.netspective.com 15
  • 16. NETSPECTIVE Predictions for Self-Management The Patient is in charge Physicians manage paper “charts” independently Physicians and Hospitals manage paper charts together Electronic Health Records (EHRs) manage data in systems Health Information Exchange allow coordination Patients manage their own data www.netspective.com 16
  • 17. NETSPECTIVE Implications Make sure the patient is in the middle Move from hardware to software focus Move to algorithms and analytics Understand system of systems (SoS) Plan for integration and coordination Start building simulators www.netspective.com 17
  • 18. NETSPECTIVE OSS revolution in device design 5 Device Components • Presence • Messaging • Registration • JDBC, Query Sensors Storage Event Architecture Display 6 App #1 App #2 Plugins 4 Location Aware Connectivity Layer (DDS, HTTP, XMPP) 3 Device OS (QNX, Linux, Windows) www.netspective.com 3rd Party Plugins Web Server, IM Client 1 7 Plugin Container 2 Security and Management Layer 18
  • 19. NETSPECTIVE OSS revolution in device capabilities Most obvious benefit Least attention Most promising capability www.netspective.com 19
  • 20. NETSPECTIVE OSS revolution in Gateways Corporate Cloud (Data Center) Development HTTPS, SOAP, REST, HTTP SFTP, SCP, HL7, X.12 SMTP, XMPP, DDS Customers & Partners Apps MQs Services VPN Services Remote Facilities Apps Registry HTTPS, REST, SOAP SFTP, SCP, HL7, X.12 SMTP, XMPP, DDS Corporate Gateway (ESB) Central DB Security www.netspective.com Service DB Management Services Firewall App DB NOTE: Initial design is for a non-federated backbone. If performance or security demands require it, a federated solution will be deployed. 20
  • 21. NETSPECTIVE OSS revolution in integration Device Teaming Cloud Services Patient Self-Management Platforms SSL VPN Patient Context Monitoring Device Gateway (DDS, XMPP, ESB) Device Data Cross Device App Workflows Data Transformation (ESB, HL7) Remote Surveillance Management Dashboards HIT Integration www.netspective.com Report Generation Enterprise Data Alarm Notifications Device Management Inventory 21
  • 22. NETSPECTIVE OSS revolution in manageability Security • Is the device authorized? Teaming Inventory • Device grouping • Where is the device? Presence • Is a device connected? www.netspective.com 22
  • 23. NETSPECTIVE Key OSS questions Will the FDA accept open source in safety-critical systems? www.netspective.com Is open source safe enough for medical devices? 23
  • 24. NETSPECTIVE Simple answers Will the FDA accept OSS in safetycritical systems? Is OSS safe enough for medical devices? Yes Yes but you must prove it www.netspective.com 24
  • 25. NETSPECTIVE It’s not as hard as we think… • Modern real-time operating systems (open source and commercial) are reliable for safetycritical medical-grade requirements. • Open standards such as TCP/IP DDS, HTTP and , , XMPP can pull vendors out of the 1980’s and into the 1990’s.  • Open source and open standards that promote enterprise IT connectivity can pull vendors into the 2010’s and beyond. www.netspective.com 25
  • 26. NETSPECTIVE But it’s not easy either…we need Risk Assessments Hazard Analysis Design for Testability Design for Simulations Documentation Traceability Mathematical Proofs Determinism Instrumentation Theoretical foundations www.netspective.com 26
  • 27. NETSPECTIVE OSS / open standards applicability Project / Standard Subject area D G Comments Linux or Android Operating system   Various distributions OMG DDS (data distribution service) Publish and subscribe messaging   Open standard with open source implementations AppWeb, Apache Web/app server   OpenTSDB Time series database  Open source project Mirth HL7 messaging engine  Built on Mule ESB Alembic Aurion HIE, message exchange  Successor to CONNECT HTML5, XMPP JSON , Various areas   Don’t reinvent the wheel SAML, XACML Security and privacy   DynObj, OSGi, JPF Plugin frameworks   www.netspective.com Build for extensibility 27