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2
Introduction

Enteric bacterial diseases

Etiologic bacteriological diagnosis by classical cultures
   techniques do not allow detection and identification of the
   most frequent diarrheagenic Escherichia coli in our
   countries as enteropathogenic E. coli (EPEC) and
   enterohemorrhagic E. coli (EHEC).
EPEC is a leading cause of diarrhea in developing
   countries.
In industrialized countries, the frequency of these
   organisms has decreased, but they continue to be
   an important cause of diarrhea .
EPEC was first reported by John Bray in 1945
as the cause of diarrhea outbreak in London




                                              5
Classification of Enteropathogenic E. coli
Pathotype Clin Features Epidem. Features Virulence factors

EPEC      Watery diarr.,   Infants,            Bundle forming pilus,
          vomiting         Developing          attaching-effacing
                           countries
EHEC      Watery diarr.,   Food & water        Shiga toxins, attaching-
          Hg. colitis      borne               effacing
ETEC      Watery diarr     Childhood diarr.,   Pili, ST & LT entero
                           Traveler's diarr.   toxins
EAEC      Diarr with       Childhood diarr.    Pili, cytotoxins
          mucus
EIEC      Dysentery/       Food borne          Cellular invasion, intra
          watery diarr                         cellular motility
Epidemiology
Laboratory diagnosis


 1- Molecular methodes

 2- immunological




                         9
Material and methods

   Gel                        bfp
Extraction        PCR                Design




        Cloning         Sequencing
Primer
         Accesion number :FM180569




                                     Cinnagen




                                        11
Primer Design


             Primer                 Name

5’-GGA AGT CAA ATT CAT GGG GGT AT   bfp F


                                    bfp R
5’-GGA ATC AGA CGC AGA CTG GTA GT
PCR and Gradient PCR
                                   Temperature   Time     Cycle(s)
Gradient PCR                           94        5 min       1
 for samples
    g=5                                94        45 sec

                                       52        1min
                                                            40
                                       72        1min
                                       72        5 min       1

       Primer F             1 l

       Primer R             1 l

10mM dNTP Mix10X Taq        22 l
 buffer Containing 1. 5mm
          MgCl2
   Taq Polymerase           1U

         DNA                1 l
Gel agarose electrophoresis
                                   1   2   3 4   5 6 7   8



  PCR Product= 250 bp

  1= ladder 100bp plus fermentas
  2-7 = sample
  8 = negative control


                        250 bp
Gel Extraction

 This methode did by Commercial
 Corebio Kit
Cloning
 Strain:JM107
 Vector:pTZ57R/T
Selection and Matrix
Colony PCR
                           1   2 3   4 5 6 7 8 9 10 11
1= ladder 100 bp

2-11= white colony
had insert

12 = blue colony

Samples 3 , 5, 7
selected for cultured in
plasmid
Plasmid extraction
  Plasmid extract by bioneer comersial kit
    and then PCR for confirm our extraction
Digestion
                                  1 2 3   4

 Digestion with BamHI and XbaI
 Enzyme
 1X Tango


 insert= 250 bp

 1= ladder 100bp plus fermentas
 2 =un digest
 3 = digest
 4 = ladder 1kb

                                      250 bp
SEQUENCING
24
25

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abbas morovvati

  • 1.
  • 2. 2
  • 3. Introduction Enteric bacterial diseases Etiologic bacteriological diagnosis by classical cultures techniques do not allow detection and identification of the most frequent diarrheagenic Escherichia coli in our countries as enteropathogenic E. coli (EPEC) and enterohemorrhagic E. coli (EHEC).
  • 4. EPEC is a leading cause of diarrhea in developing countries. In industrialized countries, the frequency of these organisms has decreased, but they continue to be an important cause of diarrhea .
  • 5. EPEC was first reported by John Bray in 1945 as the cause of diarrhea outbreak in London 5
  • 6. Classification of Enteropathogenic E. coli Pathotype Clin Features Epidem. Features Virulence factors EPEC Watery diarr., Infants, Bundle forming pilus, vomiting Developing attaching-effacing countries EHEC Watery diarr., Food & water Shiga toxins, attaching- Hg. colitis borne effacing ETEC Watery diarr Childhood diarr., Pili, ST & LT entero Traveler's diarr. toxins EAEC Diarr with Childhood diarr. Pili, cytotoxins mucus EIEC Dysentery/ Food borne Cellular invasion, intra watery diarr cellular motility
  • 7.
  • 9. Laboratory diagnosis 1- Molecular methodes 2- immunological 9
  • 10. Material and methods Gel bfp Extraction PCR Design Cloning Sequencing
  • 11. Primer Accesion number :FM180569 Cinnagen 11
  • 12. Primer Design Primer Name 5’-GGA AGT CAA ATT CAT GGG GGT AT bfp F bfp R 5’-GGA ATC AGA CGC AGA CTG GTA GT
  • 13. PCR and Gradient PCR Temperature Time Cycle(s) Gradient PCR 94 5 min 1 for samples g=5 94 45 sec 52 1min 40 72 1min 72 5 min 1 Primer F 1 l Primer R 1 l 10mM dNTP Mix10X Taq 22 l buffer Containing 1. 5mm MgCl2 Taq Polymerase 1U DNA 1 l
  • 14. Gel agarose electrophoresis 1 2 3 4 5 6 7 8 PCR Product= 250 bp 1= ladder 100bp plus fermentas 2-7 = sample 8 = negative control 250 bp
  • 15. Gel Extraction This methode did by Commercial Corebio Kit
  • 18. Colony PCR 1 2 3 4 5 6 7 8 9 10 11 1= ladder 100 bp 2-11= white colony had insert 12 = blue colony Samples 3 , 5, 7 selected for cultured in plasmid
  • 19. Plasmid extraction Plasmid extract by bioneer comersial kit and then PCR for confirm our extraction
  • 20.
  • 21.
  • 22. Digestion 1 2 3 4 Digestion with BamHI and XbaI Enzyme 1X Tango insert= 250 bp 1= ladder 100bp plus fermentas 2 =un digest 3 = digest 4 = ladder 1kb 250 bp
  • 24. 24
  • 25. 25

Notes de l'éditeur

  1. The diarrhea and other symptoms of EPEC infections probably are caused by bacterial invasion of host cells and interference with normal cellular signal transduction, rather than by production of toxins.
  2. Studies with adult volunteers have demonstratedthat intimin, pEAF and BFP are essential virulence deter-minants of EPEC [10-12]. Interestingly, there is evidencethat a subset of EPEC strains, known as atypical EPEC(aEPEC), which lack pEAF and BFP, are also pathogenic
  3. EPEC strains may be either typical, producing bundle forming pili(encoded by the bfpA gene) that mediatelocalised adherence on cultured epithelial cells, or atypical, which are negative for these appendages but show localised like adherence,diffuse adherence or aggregative adherence patterns and produce diarrhae in developing worlds.Virulance gene is bfp for typical and non typical