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48th ACM Southeast Conference. ACMSE 2010.
Oxford, Mississippi. April 15-17, 2010.




   Semantic Web powering Intelligent Enterprise and
                 Web Applications
                                       Amit P. Sheth
                              LexisNexis Ohio Eminent Scholar
            Ohio Center of Excellence in Knowledge enabled Computing (Kno.e.sis)
                              Wright State University, Dayton, OH




                           Technology Landscape 2013, Dayton OH. May 26, 2010
Ohio Center of Excellence on
Knowledge-Enabled Computing (Kno.e.sis)
2D-3D & Immersive
                       Visualization, Human                                    Impacting
                                         affects
                       Computer Interfaces                                    bottom line
            Migraine
 Domain                                                                                             Magnesium
 Models/                                           Stress       inhibit                     isa
Knowledge
             Patient                                                    Calcium Channel
                                                                        Blockers
                                                        Knowledge
                                                         discovery
                                                                                                  Biomedical
                         SEMANTICS, MEANING PROCESSING                                            Knowledge
                                                                                                  Discovery,
                                      Patterns / Inference / Reasoning
                                                                             Meta data /          Knowledge
                                                                             Semantic             Management &
                                                                             Annotations          Visualization

                                                                                             Search and
                       Metadata Extraction/Semantic Annotations                              browsing




                                                   Massive amounts of data
               Structured text
                  (Scientific
                                       Experimental                                               Public domain
                publications /                                       Clinical Trial Data           knowledge
                white papers)             Results
                                                                                                    (PubMed)
                                                                         3
Kno.e.sis Vision

  Kno.e.sis’ leadership in semantic processing will
    contribute to basic theory about computation and
    cognitive systems, and address pressing practical
    problems associated with productive thinking in the
    face of an explosion of data.

  Kno.e.sis intends to lead a march from information age
    to meaning age.



                             4
Globally Competitive Careers
and Economic Development
            WPAFB Directorates
                                                            Dayton Region Companies
                                             Tech^Edge
           Human
                                Sensor                   Woolpert REI Tech, Aptima
        Effectiveness                                     SAIC    LexisNexis

              Knowledge Workers, Products, Services and Applications
      Defense/Aerospace                  Advanced Data                  Human Sciences
            R&D                           Management                     & Health Care

                        Application to Regional Industry Cluster
           Kno.e.sis+Faculty Strengths                             daytaOhio – a WCI
  • Cognitive Science & Human Factors
  • Data Analysis/Mining/Visualization                       • Visualization and Data Mgt
  • Info. & Knowledge Mgmt                                     Infrastructure
  • Web 3.0 (Semantics, Services, Sensors)                   • Consulting and Technology
  • Virtual Worlds, Social Computing
                                                               Transfer
  • High Performance/Cloud Computing
  • Bioinformatics/Biomedicine, Healthcare

                  Academic Research and Infrastructure
                                          5
6
Significant
     Infrastructure

VERITAS                 Whole-Body Laser
                        Range Scanner



                                            stereoscopic 3D
                                            visualization




           NMR                        AVL


                                              7
Exceptional
Regional Collaboration




       • At least 6 active projects with AFRL/WPAFB
          • Human Effectiveness Directorate
          • Sensors Directorate
                                  8
Exceptional
National Collaboration




    • Univ. of Georgia, Stanford, Purdue, OSU, Ohio U., Indiana U.
      UC-Irvine, Michigan State U., Army, W3C
    • Microsoft, IBM, HP, Google
                                   9
Exceptional
International Collaboration




      • U. Manchester, TU-Copenhagen, TU-Delft, DERI (Ireland),
        Max-Planck Institute, U. Melbourne, U Queensland, NICTA-
        Australia,CSIRO, DA-IICT (India)
                                10
48th ACM Southeast Conference. ACMSE 2010.
Oxford, Mississippi. April 15-17, 2010.




   Semantic Web powering Intelligent Enterprise and
                 Web Applications
                                       Amit P. Sheth
                              LexisNexis Ohio Eminent Scholar
            Ohio Center of Excellence in Knowledge enabled Computing (Kno.e.sis)
                              Wright State University, Dayton, OH




                           Technology Landscape 2013, Dayton OH. May 26, 2010
Evolution of the Web
                                       Web as an oracle / assistant / partner
                                         - “ask the Web”: using semantics to
                                       leverage text + data + services
                                         - Powerset
                       2007
                              Web of people
                                - social networks, user-created casual
                                  content
                                - Twine, GeneRIF, Connotea
                    Web of resources
                     - data = service = data, mashups
                     - ubiquitous computing

          Web of databases
           - dynamically generated pages
1997       - web query interfaces
  Web of pages
   - text, manually created links
   - extensive navigation
                                               12
OUTLINE



  • Semantic Web –key capabilities and
    technlologies
  • Real-world Applications demonstrating benefit
    of semantic web technologies
  • Exciting on-going research




                         13
Introduction


                    1
                    2
                    3
                    of
               Semantic Web



                    14
Introduction [1]


  • Ontology: Agreement with a common
    vocabulary/nomenclature, conceptual models
    and domain Knowledge
  • Schema + Knowledge base
  • Agreement is what enables interoperability
  • Formal description - Machine processability is
    what leads to automation


                         15
Introduction [2]


  • Semantic Annotation (Metadata Extraction):
    Associating meaning with data, or labeling
    data so it is more meaningful to the system
    and people.
  • Can be manual, semi-automatic (automatic
    with human verification), automatic.




                         16
From Syntax to Semantics




   Deep semantics




Shallow semantics




                           17
Introduction [3]


  • Reasoning/Computation: semantics enabled
    search, integration, answering complex
    queries, connections and analyses (paths, sub
    graphs), pattern finding, mining, hypothesis
    validation, discovery, visualization




                         18
Characteristics of Semantic Web

        Self                           Easy to
        Describing                     Understand



       The Semantic Web:Machine &
  Issued by
       XML, RDF & Ontology
  a Trusted             Human
  Authority             Readable



                                       Can be
        Convertible                    Secured


                                           Adapted from William Ruh (CISCO)

                                  19
SW Stack: Architecture, Standards




                                    20
a little bit about ontologies
Many Ontologies Available
e.g. Open Biomedical Ontologies




Open Biomedical Ontologies, http://obo.sourceforge.net/

                                                          22
From simple ontologies
Drug Ontology Hierarchy
(showing is-a relationships)



                                                  formulary_
           non_drug_            interaction_       property                     formulary
            reactant              property
                                                                                                      indication
                       indication_                               property
                                                                                       owl:thing
    monograph            property
     _ix_class                          prescription                                                  interaction_
                                          _drug_                                                       with_non_
                   brandname_                                    prescription
                                        brand_name                                                   drug_reactant
   prescription     individual                                      _drug            interaction
     _drug_
    property                      brandname_
                  brandname_       composite       prescription                                    interaction_
                   undeclared                        _drug_                                        with_mono
                                                                                 interaction_
                                                     generic                                       graph_ix_cl
                                                                                 with_prescri
       cpnum_                      generic_                                                             ass
                                                                                  ption_drug
        group                     composite
                                                             generic_
                                                            individual

                                                       24
to complex ontologies
N-Glycosylation metabolic pathway



                                                           GNT-I
                                               attaches GlcNAc at position 2
     N-glycan_beta_GlcNAc_9                    N-acetyl-glucosaminyl_transferase_V
                                                                   N-glycan_alpha_man_4




                       GNT-V
          attaches GlcNAc at position 6
             UDP-N-acetyl-D-glucosamine + alpha-D-Mannosyl-1,3-(R1)-beta-D-mannosyl-R2
                                                  <=>
        UDP + N-Acetyl-$beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3-(R1)-beta-D-mannosyl-$R2



            UDP-N-acetyl-D-glucosamine + G00020 <=> UDP + G00021

                                                  26
A little bit about semantic metadata extractions and
                      annotations
Metadata Creation

                                               Nexis           Digital Videos
                                                UPI
                                                 AP      ...                    ...
                                               Feeds/                                  Data Stores
                                             Documents
                      WWW, Enterprise                            Digital Maps
                       Repositories
                                                                      ...
                                                Digital Images              Digital Audios




    Create/extract as much (semantics)
    metadata automatically as possible;
   Use ontlogies to improve and enhance                  EXTRACTORS
                 extraction

                                                         METADATA


                                        28
Automatic Semantic Metadata
Extraction/Annotation




                              29
Significant presence



•   Life Science (biomedical)
•   Health Care (clinical)
•   Defense & Intelligence
•   Web
48th ACM Southeast Conference. ACMSE 2010.
Oxford, Mississippi. April 15-17, 2010.




                         Semantic Web in Action

                                   Financial Services
                                   Risk Management
Semagix Freedom Architecture

(a platform for building ontology-driven information system)
                                                                                                       Knowledge Knowledge
        Semantic Enhancement Server                                                                     Agents    Sources
                                                                                                                     KS
             Automatic       Entity Extraction,
            Classification      Enhanced                                                                   KA
                                 Metadata,                                Ontology                                   KS


                                                                                                           KA
                                                                                                                     KS
            Content          Content
            Sources          Agents
                                                          Metabase                                         KA        KS
          Databases
                               CA
          XML/Feeds

           Websites            CA
                                                        Metadata    Metadata          Semantic Query Server
             Email                                      adapter     adapter
                                                                                         Ontology and Metabase
                                                        Existing Applications             Main Memory Index
                               CA
            Reports

          Documents
                                                  ECM          CRM              EIP


© Semagix, Inc.
Global Bank                                                            6/3/201
                                                                                 33
                                                                       0

    • Aim
    • Legislation (PATRIOT ACT) requires banks to identify ‘who’ they
      are doing business with
    • Problem
    • Volume of internal and external data needed to be accessed
    • Complex name matching and disambiguation criteria

    • Requirement to ‘risk score’ certain attributes of this data
    • Approach
    • Creation of a ‘risk ontology’ populated from trusted sources
      (OFAC etc);
       Sophisticated entity disambiguation
    • Semantic querying, Rules specification & processing

    • Solution
    • Rapid and accurate KYC checks
    • Risk scoring of relationships allowing for prioritisation of results
    • Full visibility of sources and trustworthiness
                               2004 SEMAGIX All rights
                                      reserved.
The Process

                                                                                                  Ahmed Yaseer:
                                                                                                  • Appears on Watchlist
                                                                                                   ‘FBI’
                              Watch list             Organization
                                                                                                  • Works for Company
                                                                                                   ‘WorldCom’
                                                                        Hamas
                       FBI Watchlist                                                              • Member of
                                                                         member of organization    organization ‘Hamas’
                     appears on Watchlist


      Ahmed Yaseer




                                                    works for Company

                                                       WorldCom

                                                   Company




                                            2004 SEMAGIX All rights
                                                   reserved.
Global Investment Bank

                                    Law                        Public     World Wide     BLOGS,
           Watch Lists          Enforcement   Regulators      Records     Web content      RSS


      Semi-structured Government Data                      Un-structure text, Semi-structured Data


Establishing
New Account

                                                                                                  User will be able to navigate
                                                                                                  the ontology using a number
                                                                                                  of different interfaces


           Scores the entity
           based on the
           content and entity
           relationships




   Example of
   Fraud Prevention
   application used in
   financial services

                                                                                                                      2004 SEMAGIX All rights
Equity Research Dashboard

Equity Research Dashboard with Blended Semantic Querying and Browsing



 Automatic
 3rd party                                                               Focused
 content                                                                 relevant
 integration                                                             content
                                                                         organized
                                                                         by topic
                                                                         (semantic
                                                                         categorization)


                                                                        Related relevant
                                                                        content not
                                                                        explicitly asked for
                                                                        (semantic
                                                                        associations)



                                                                        Automatic Content
                                                                        Aggregation
                                                                        from multiple
Competitive                                                             content providers
research                                                                and feeds
inferred
automatically
48th ACM Southeast Conference. ACMSE 2010.
Oxford, Mississippi. April 15-17, 2010.




                         Semantic Web in Action

                               Defense & Intelligence
An Ontological Approach to
Assessing IC Need to Know

            Sponsored by ARDA
Work performed at LSDIS Lab, Univ. of Georgia
               March2005
Security and Terrorism Part of SWETO Ontology




6/21/2004
Schematic of Ontological Approach to the Legitimate Access Problem


                                                                               Semagix Freedom




Semagix Freedom




          6/21/2004
Graph-based creation:
A Context of Investigation

                                      26,489 entities
                                      34,513 (explicit) relationships

                   Add relationship
                     to context




       6/21/2004
Show me the stuff …




                       See demonstration at:
                http://knoesis.org/library/demos




    6/21/2004
48th ACM Southeast Conference. ACMSE 2010.
Oxford, Mississippi. April 15-17, 2010.




                         Semantic Web in Action

                     Supporting Clinical Decision Making
Clinical Decision Making




  • Status: In use today
  • Where: Athens Heart Center
  • What: Use of Semantic Web technologies for
    clinical decision support
Operational Since January 2006
Active Semantic Electronic Medical
Records (ASEMR)

  Goals:
  • Increase efficiency with decision support
     •formulary, billing, reimbursement
     • real time chart completion
     • automated linking with billing
  • Reduce Errors, Improve Patient Satisfaction & Reporting
     •drug interactions, allergy, insurance
  • Improve Profitability
  Technologies:
  • Ontologies, semantic annotations & rules
  • Service Oriented Architecture
                                     Thanks -- Dr. Agrawal, Dr. Wingeth, and others. ISWC2006 paper
ASEMR - Demonstration




              See demonstration at:
        http://knoesis.org/library/demos
ASMER Efficiency

Chart Completion before the preliminary deployment

          600
          500
          400
 Charts




                                                                     Same Day
          300
                                                                     Back Log
          200
          100
            0     Chart Completion after the preliminary deployment
                Se 4




                       5
                      04




                      05
            04




                      05
                      04




                      05
                      04

                      04
                     l0




                     l0
            n




                    n
                  ay




                  ay
                   pt
                   ar




                   ar
                  ov
                  Ju




                  Ju
                            700
          Ja




                 Ja
                 M




                 M
                M




                M
                N


                            600
                            500    Month/Year
                   Charts




                            400                                                 Same Day
                            300                                                 Back Log
                            200
                            100
                              0
                                  Sept     Nov 05        Jan 06   Mar 06
                                   05
                                                    Month/Year
48th ACM Southeast Conference. ACMSE 2010.
Oxford, Mississippi. April 15-17, 2010.




                        Scooner: Semantic Browser

                A tool for knowledge discovery with
                examples from Scientific Literature
OVERVIEW


    1.   Novel Information Exploration Paradigm
             Text Exploration on the context of relationships
             Not hyperlinks


    2.   Demonstrate use of background knowledge
            Named Entities, Relationships


    3.   Prototype Implementation
             Semantic annotations for navigation


    4.   Aggregation Utilities
            Saving, bookmarking, publishing etc


                                 50
WHY SCOONER?

         Query Reformulations
                   Impatient users
                   Recognition over                          Recall

         Constrained navigation
                   Hyperlink dependent                                  - apriori

        Fuzzy User Interests
                   Haiti Earthquake – Recovery, Relief, Political Climate, Crime


        Current approaches are not as effective for
        Exploratory Search (Search-and-Sift)
   Amit P. Sheth, Cartic Ramakrishnan: Relationship Web: Blazing Semantic Trails between Web Resources. IEEE Internet
   Computing 11(4): 77-81 (2007)
MOTIVATION


     Users are information seekers
         Information is embedded in documents
        A priori hyperlink dependent


     Semantic Web Standards
        Entity Identification (Semantic Annotations)
        Relationshipand Triple Identification
        Explore documents/information via relationships




                               52
Use Case Scenario




Search Phrase: Magnesium




                           53
Use Case Scenario




                    54
Use Case Scenario




                    55
SUMMARY


    Novel   Information Exploration Paradigm
    Semantic Browser support Contextual Navigation
    Identify Named Entities and Relationships
    Provide Semantic Annotations
    Utilities for Aggregation
    Semantic Trails to Knowledge Discovery

                        See demonstration at:
                  http://knoesis.org/library/demos




                                 56
48th ACM Southeast Conference. ACMSE 2010.
Oxford, Mississippi. April 15-17, 2010.




            Semantic Sensor Web

                       Kno.e.sis Center
                    Wright State University
            http://knoesis.org/projects/sensorweb
Semantic Sensor Web
 Sensors are now ubiquitous,
         and constantly generating observations about our world
Semantic Sensor Web




 However, these systems are often stovepiped,
         with strong tie between sensor network and application
Semantic Sensor Web



                      We want to set this data free
Semantic Sensor Web

 With freedom comes new responsibilities ….
Semantic Sensor Web

 (1) How to discover, access and search the data?


         Web Services
                  - OGC Sensor Web Enablement (SWE)
Semantic Sensor Web

 (2) How to integrate this data together,
         when it comes from many different sources?


         Shared knowledge models, or Ontologies
                  - syntactic models – XML (SWE)
                  - semantic models – OWL/RDF (W3C SSN-XG)
Semantic Sensor Web
 Sensor Observation Ontology
Semantic Sensor Web




  The SSN-XG Deliverables


  • Ontology for semantically describing sensors

  • Illustrate the relationship to OGC Sensor Web Enablement standards

  • Semantic annotation of OGC Sensor Web Enablement standards
Semantic Sensor Web

 Linked Open Data: a community-led effort to create openly accessible, and interlinked,
 semantic (RDF) data on the Web.
Semantic Sensor Web

  Sensors Dataset
  •   RDF descriptions of ~20,000 weather stations in the United States.
  •   Observation dataset linked to sensors descriptions.
  •   Sensors link to locations in Geonames (in LOD) that are nearby.




                         near



       weather station
Observations Dataset

 •   RDF descriptions of hurricane and blizzard observations in the United States.
 •   The data originated at MesoWest (University of Utah)
 •   Observation types: temperature, visibility, precipitation, pressure, wind speed,
     humidity, etc.




                                           69
Linked Datasets



                         procedure                       location
   Observation                                                           Location KB
                                          Sensor KB
       KB                                                                 (Geonames)




  Example
                    procedure                            location
       720F                             Thermometer                     Dayton Airport




  • ~2 billion triples               • 20,000+ systems              • 230,000+ locations
  • MesoWest                         • MesoWest                     • Geonames
  • Dynamic                          • ~Static                      • ~Static

                                                 70
Semantic Sensor Web

 (3) How to make numerical sensor data meaningful
         to web applications and naïve users?




 Symbols more meaningful than numbers
                  - active perception
Active Perception:


 •     is an iterative, bi-directional feedback loop for collecting and explaining
       sensor data
                                       Explanation


     Observation                                                      Expectation




                                         Attention




                                            72
Overall Architecture




                       73
DEMOS




 Semantic Sensor Web


 Demos at
 http://wiki.knoesis.org/index.php/SSW
 •Sensor Discovery On Linked Data

 •Semantic Sensor Observation Service (MesoWest)

 •Video on the Semantic Sensor Web
                                        74
Ohio Center of Excellence
Knowledge-Enabled Computing
(Kno.e.sis)




                   SEMANTIC SOCIAL WEB
Everyone Wants to talk
…and be heard!




  Hundreds and thousands of tweets, facebook posts, blogs
  about a single event, multiple narratives, strong opinions,
                       breaking news..
                              76
TWITRIS : Twitter+Tetris
  • Our attempt to help you keep up with citizen
    observations on Twitter
    – WHAT are people saying, WHEN, from WHERE


  • Puts citizen reports in context for you by
    overlaying it with news, wikipedia articles!




                           77
See demo and live system at
http://twitris.knoesis.org




                              78
How we work with industry

Interns, Training
SBIR/STTR
Joint contracts
Tech Transfer/licensing




                     79
More of Web 3.0
      Semantics enhanced
Web, Social, Sensor and Services
      Computing, and their
         applications to
 health care, life sciences, DoD,
   IT/Data management, … at
       http://knoesis.org

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Semantic Web powering Enterprise and Web Applications

  • 1. 48th ACM Southeast Conference. ACMSE 2010. Oxford, Mississippi. April 15-17, 2010. Semantic Web powering Intelligent Enterprise and Web Applications Amit P. Sheth LexisNexis Ohio Eminent Scholar Ohio Center of Excellence in Knowledge enabled Computing (Kno.e.sis) Wright State University, Dayton, OH Technology Landscape 2013, Dayton OH. May 26, 2010
  • 2. Ohio Center of Excellence on Knowledge-Enabled Computing (Kno.e.sis)
  • 3. 2D-3D & Immersive Visualization, Human Impacting affects Computer Interfaces bottom line Migraine Domain Magnesium Models/ Stress inhibit isa Knowledge Patient Calcium Channel Blockers Knowledge discovery Biomedical SEMANTICS, MEANING PROCESSING Knowledge Discovery, Patterns / Inference / Reasoning Meta data / Knowledge Semantic Management & Annotations Visualization Search and Metadata Extraction/Semantic Annotations browsing Massive amounts of data Structured text (Scientific Experimental Public domain publications / Clinical Trial Data knowledge white papers) Results (PubMed) 3
  • 4. Kno.e.sis Vision Kno.e.sis’ leadership in semantic processing will contribute to basic theory about computation and cognitive systems, and address pressing practical problems associated with productive thinking in the face of an explosion of data. Kno.e.sis intends to lead a march from information age to meaning age. 4
  • 5. Globally Competitive Careers and Economic Development WPAFB Directorates Dayton Region Companies Tech^Edge Human Sensor Woolpert REI Tech, Aptima Effectiveness SAIC LexisNexis Knowledge Workers, Products, Services and Applications Defense/Aerospace Advanced Data Human Sciences R&D Management & Health Care Application to Regional Industry Cluster Kno.e.sis+Faculty Strengths daytaOhio – a WCI • Cognitive Science & Human Factors • Data Analysis/Mining/Visualization • Visualization and Data Mgt • Info. & Knowledge Mgmt Infrastructure • Web 3.0 (Semantics, Services, Sensors) • Consulting and Technology • Virtual Worlds, Social Computing Transfer • High Performance/Cloud Computing • Bioinformatics/Biomedicine, Healthcare Academic Research and Infrastructure 5
  • 6. 6
  • 7. Significant Infrastructure VERITAS Whole-Body Laser Range Scanner stereoscopic 3D visualization NMR AVL 7
  • 8. Exceptional Regional Collaboration • At least 6 active projects with AFRL/WPAFB • Human Effectiveness Directorate • Sensors Directorate 8
  • 9. Exceptional National Collaboration • Univ. of Georgia, Stanford, Purdue, OSU, Ohio U., Indiana U. UC-Irvine, Michigan State U., Army, W3C • Microsoft, IBM, HP, Google 9
  • 10. Exceptional International Collaboration • U. Manchester, TU-Copenhagen, TU-Delft, DERI (Ireland), Max-Planck Institute, U. Melbourne, U Queensland, NICTA- Australia,CSIRO, DA-IICT (India) 10
  • 11. 48th ACM Southeast Conference. ACMSE 2010. Oxford, Mississippi. April 15-17, 2010. Semantic Web powering Intelligent Enterprise and Web Applications Amit P. Sheth LexisNexis Ohio Eminent Scholar Ohio Center of Excellence in Knowledge enabled Computing (Kno.e.sis) Wright State University, Dayton, OH Technology Landscape 2013, Dayton OH. May 26, 2010
  • 12. Evolution of the Web Web as an oracle / assistant / partner - “ask the Web”: using semantics to leverage text + data + services - Powerset 2007 Web of people - social networks, user-created casual content - Twine, GeneRIF, Connotea Web of resources - data = service = data, mashups - ubiquitous computing Web of databases - dynamically generated pages 1997 - web query interfaces Web of pages - text, manually created links - extensive navigation 12
  • 13. OUTLINE • Semantic Web –key capabilities and technlologies • Real-world Applications demonstrating benefit of semantic web technologies • Exciting on-going research 13
  • 14. Introduction 1 2 3 of Semantic Web 14
  • 15. Introduction [1] • Ontology: Agreement with a common vocabulary/nomenclature, conceptual models and domain Knowledge • Schema + Knowledge base • Agreement is what enables interoperability • Formal description - Machine processability is what leads to automation 15
  • 16. Introduction [2] • Semantic Annotation (Metadata Extraction): Associating meaning with data, or labeling data so it is more meaningful to the system and people. • Can be manual, semi-automatic (automatic with human verification), automatic. 16
  • 17. From Syntax to Semantics Deep semantics Shallow semantics 17
  • 18. Introduction [3] • Reasoning/Computation: semantics enabled search, integration, answering complex queries, connections and analyses (paths, sub graphs), pattern finding, mining, hypothesis validation, discovery, visualization 18
  • 19. Characteristics of Semantic Web Self Easy to Describing Understand The Semantic Web:Machine & Issued by XML, RDF & Ontology a Trusted Human Authority Readable Can be Convertible Secured Adapted from William Ruh (CISCO) 19
  • 20. SW Stack: Architecture, Standards 20
  • 21. a little bit about ontologies
  • 22. Many Ontologies Available e.g. Open Biomedical Ontologies Open Biomedical Ontologies, http://obo.sourceforge.net/ 22
  • 24. Drug Ontology Hierarchy (showing is-a relationships) formulary_ non_drug_ interaction_ property formulary reactant property indication indication_ property owl:thing monograph property _ix_class prescription interaction_ _drug_ with_non_ brandname_ prescription brand_name drug_reactant prescription individual _drug interaction _drug_ property brandname_ brandname_ composite prescription interaction_ undeclared _drug_ with_mono interaction_ generic graph_ix_cl with_prescri cpnum_ generic_ ass ption_drug group composite generic_ individual 24
  • 26. N-Glycosylation metabolic pathway GNT-I attaches GlcNAc at position 2 N-glycan_beta_GlcNAc_9 N-acetyl-glucosaminyl_transferase_V N-glycan_alpha_man_4 GNT-V attaches GlcNAc at position 6 UDP-N-acetyl-D-glucosamine + alpha-D-Mannosyl-1,3-(R1)-beta-D-mannosyl-R2 <=> UDP + N-Acetyl-$beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3-(R1)-beta-D-mannosyl-$R2 UDP-N-acetyl-D-glucosamine + G00020 <=> UDP + G00021 26
  • 27. A little bit about semantic metadata extractions and annotations
  • 28. Metadata Creation Nexis Digital Videos UPI AP ... ... Feeds/ Data Stores Documents WWW, Enterprise Digital Maps Repositories ... Digital Images Digital Audios Create/extract as much (semantics) metadata automatically as possible; Use ontlogies to improve and enhance EXTRACTORS extraction METADATA 28
  • 30. Significant presence • Life Science (biomedical) • Health Care (clinical) • Defense & Intelligence • Web
  • 31. 48th ACM Southeast Conference. ACMSE 2010. Oxford, Mississippi. April 15-17, 2010. Semantic Web in Action Financial Services Risk Management
  • 32. Semagix Freedom Architecture (a platform for building ontology-driven information system) Knowledge Knowledge Semantic Enhancement Server Agents Sources KS Automatic Entity Extraction, Classification Enhanced KA Metadata, Ontology KS KA KS Content Content Sources Agents Metabase KA KS Databases CA XML/Feeds Websites CA Metadata Metadata Semantic Query Server Email adapter adapter Ontology and Metabase Existing Applications Main Memory Index CA Reports Documents ECM CRM EIP © Semagix, Inc.
  • 33. Global Bank 6/3/201 33 0 • Aim • Legislation (PATRIOT ACT) requires banks to identify ‘who’ they are doing business with • Problem • Volume of internal and external data needed to be accessed • Complex name matching and disambiguation criteria • Requirement to ‘risk score’ certain attributes of this data • Approach • Creation of a ‘risk ontology’ populated from trusted sources (OFAC etc); Sophisticated entity disambiguation • Semantic querying, Rules specification & processing • Solution • Rapid and accurate KYC checks • Risk scoring of relationships allowing for prioritisation of results • Full visibility of sources and trustworthiness 2004 SEMAGIX All rights reserved.
  • 34. The Process Ahmed Yaseer: • Appears on Watchlist ‘FBI’ Watch list Organization • Works for Company ‘WorldCom’ Hamas FBI Watchlist • Member of member of organization organization ‘Hamas’ appears on Watchlist Ahmed Yaseer works for Company WorldCom Company 2004 SEMAGIX All rights reserved.
  • 35. Global Investment Bank Law Public World Wide BLOGS, Watch Lists Enforcement Regulators Records Web content RSS Semi-structured Government Data Un-structure text, Semi-structured Data Establishing New Account User will be able to navigate the ontology using a number of different interfaces Scores the entity based on the content and entity relationships Example of Fraud Prevention application used in financial services 2004 SEMAGIX All rights
  • 36. Equity Research Dashboard Equity Research Dashboard with Blended Semantic Querying and Browsing Automatic 3rd party Focused content relevant integration content organized by topic (semantic categorization) Related relevant content not explicitly asked for (semantic associations) Automatic Content Aggregation from multiple Competitive content providers research and feeds inferred automatically
  • 37. 48th ACM Southeast Conference. ACMSE 2010. Oxford, Mississippi. April 15-17, 2010. Semantic Web in Action Defense & Intelligence
  • 38. An Ontological Approach to Assessing IC Need to Know Sponsored by ARDA Work performed at LSDIS Lab, Univ. of Georgia March2005
  • 39. Security and Terrorism Part of SWETO Ontology 6/21/2004
  • 40. Schematic of Ontological Approach to the Legitimate Access Problem Semagix Freedom Semagix Freedom 6/21/2004
  • 41. Graph-based creation: A Context of Investigation 26,489 entities 34,513 (explicit) relationships Add relationship to context 6/21/2004
  • 42. Show me the stuff … See demonstration at: http://knoesis.org/library/demos 6/21/2004
  • 43. 48th ACM Southeast Conference. ACMSE 2010. Oxford, Mississippi. April 15-17, 2010. Semantic Web in Action Supporting Clinical Decision Making
  • 44. Clinical Decision Making • Status: In use today • Where: Athens Heart Center • What: Use of Semantic Web technologies for clinical decision support
  • 46. Active Semantic Electronic Medical Records (ASEMR) Goals: • Increase efficiency with decision support •formulary, billing, reimbursement • real time chart completion • automated linking with billing • Reduce Errors, Improve Patient Satisfaction & Reporting •drug interactions, allergy, insurance • Improve Profitability Technologies: • Ontologies, semantic annotations & rules • Service Oriented Architecture Thanks -- Dr. Agrawal, Dr. Wingeth, and others. ISWC2006 paper
  • 47. ASEMR - Demonstration See demonstration at: http://knoesis.org/library/demos
  • 48. ASMER Efficiency Chart Completion before the preliminary deployment 600 500 400 Charts Same Day 300 Back Log 200 100 0 Chart Completion after the preliminary deployment Se 4 5 04 05 04 05 04 05 04 04 l0 l0 n n ay ay pt ar ar ov Ju Ju 700 Ja Ja M M M M N 600 500 Month/Year Charts 400 Same Day 300 Back Log 200 100 0 Sept Nov 05 Jan 06 Mar 06 05 Month/Year
  • 49. 48th ACM Southeast Conference. ACMSE 2010. Oxford, Mississippi. April 15-17, 2010. Scooner: Semantic Browser A tool for knowledge discovery with examples from Scientific Literature
  • 50. OVERVIEW 1. Novel Information Exploration Paradigm  Text Exploration on the context of relationships  Not hyperlinks 2. Demonstrate use of background knowledge  Named Entities, Relationships 3. Prototype Implementation  Semantic annotations for navigation 4. Aggregation Utilities  Saving, bookmarking, publishing etc 50
  • 51. WHY SCOONER?  Query Reformulations  Impatient users  Recognition over Recall  Constrained navigation  Hyperlink dependent - apriori Fuzzy User Interests  Haiti Earthquake – Recovery, Relief, Political Climate, Crime Current approaches are not as effective for Exploratory Search (Search-and-Sift) Amit P. Sheth, Cartic Ramakrishnan: Relationship Web: Blazing Semantic Trails between Web Resources. IEEE Internet Computing 11(4): 77-81 (2007)
  • 52. MOTIVATION  Users are information seekers Information is embedded in documents  A priori hyperlink dependent  Semantic Web Standards  Entity Identification (Semantic Annotations)  Relationshipand Triple Identification  Explore documents/information via relationships 52
  • 53. Use Case Scenario Search Phrase: Magnesium 53
  • 56. SUMMARY  Novel Information Exploration Paradigm  Semantic Browser support Contextual Navigation  Identify Named Entities and Relationships  Provide Semantic Annotations  Utilities for Aggregation  Semantic Trails to Knowledge Discovery See demonstration at: http://knoesis.org/library/demos 56
  • 57. 48th ACM Southeast Conference. ACMSE 2010. Oxford, Mississippi. April 15-17, 2010. Semantic Sensor Web Kno.e.sis Center Wright State University http://knoesis.org/projects/sensorweb
  • 58. Semantic Sensor Web Sensors are now ubiquitous, and constantly generating observations about our world
  • 59. Semantic Sensor Web However, these systems are often stovepiped, with strong tie between sensor network and application
  • 60. Semantic Sensor Web We want to set this data free
  • 61. Semantic Sensor Web With freedom comes new responsibilities ….
  • 62. Semantic Sensor Web (1) How to discover, access and search the data? Web Services - OGC Sensor Web Enablement (SWE)
  • 63. Semantic Sensor Web (2) How to integrate this data together, when it comes from many different sources? Shared knowledge models, or Ontologies - syntactic models – XML (SWE) - semantic models – OWL/RDF (W3C SSN-XG)
  • 64. Semantic Sensor Web Sensor Observation Ontology
  • 65.
  • 66. Semantic Sensor Web The SSN-XG Deliverables • Ontology for semantically describing sensors • Illustrate the relationship to OGC Sensor Web Enablement standards • Semantic annotation of OGC Sensor Web Enablement standards
  • 67. Semantic Sensor Web Linked Open Data: a community-led effort to create openly accessible, and interlinked, semantic (RDF) data on the Web.
  • 68. Semantic Sensor Web Sensors Dataset • RDF descriptions of ~20,000 weather stations in the United States. • Observation dataset linked to sensors descriptions. • Sensors link to locations in Geonames (in LOD) that are nearby. near weather station
  • 69. Observations Dataset • RDF descriptions of hurricane and blizzard observations in the United States. • The data originated at MesoWest (University of Utah) • Observation types: temperature, visibility, precipitation, pressure, wind speed, humidity, etc. 69
  • 70. Linked Datasets procedure location Observation Location KB Sensor KB KB (Geonames) Example procedure location 720F Thermometer Dayton Airport • ~2 billion triples • 20,000+ systems • 230,000+ locations • MesoWest • MesoWest • Geonames • Dynamic • ~Static • ~Static 70
  • 71. Semantic Sensor Web (3) How to make numerical sensor data meaningful to web applications and naïve users? Symbols more meaningful than numbers - active perception
  • 72. Active Perception: • is an iterative, bi-directional feedback loop for collecting and explaining sensor data Explanation Observation Expectation Attention 72
  • 74. DEMOS Semantic Sensor Web Demos at http://wiki.knoesis.org/index.php/SSW •Sensor Discovery On Linked Data •Semantic Sensor Observation Service (MesoWest) •Video on the Semantic Sensor Web 74
  • 75. Ohio Center of Excellence Knowledge-Enabled Computing (Kno.e.sis) SEMANTIC SOCIAL WEB
  • 76. Everyone Wants to talk …and be heard! Hundreds and thousands of tweets, facebook posts, blogs about a single event, multiple narratives, strong opinions, breaking news.. 76
  • 77. TWITRIS : Twitter+Tetris • Our attempt to help you keep up with citizen observations on Twitter – WHAT are people saying, WHEN, from WHERE • Puts citizen reports in context for you by overlaying it with news, wikipedia articles! 77
  • 78. See demo and live system at http://twitris.knoesis.org 78
  • 79. How we work with industry Interns, Training SBIR/STTR Joint contracts Tech Transfer/licensing 79
  • 80. More of Web 3.0 Semantics enhanced Web, Social, Sensor and Services Computing, and their applications to health care, life sciences, DoD, IT/Data management, … at http://knoesis.org

Notes de l'éditeur

  1. Let me start by offering my appreciation for our Chancellor Dr. Fingerhut’s visionary leadership in establishing the Ohio Center of Excellence program that identifies Centers and program that generate world-class research and help draw talent and investment to the state. I would be remiss if I did not call out tremendous leadership that our President Dr. Hopkins and his entire leadership team has shown in regards to identifying and promoting these centers– my tanks to Dr. Angle, Dr. Bantle. Dr. Jang, and Dr. Sudkamp– thanks for your early and steadfast support for Kno.e.sis.
  2. Let me give a technological introduction to what our center is about: we all face a fire hose of data-- Pubmed adds 2000 to 4000 citations per day, it is usual to add about 5 gig from a single run of a scientific experiment -- and just imagine how much data created by all the cameras and 40 billion mobile sensors in the world! But even with all the search and browsing tools we have, we face huge information glut. How do we make sense from the data? Just as humans apply their knowledge and experience to understand what they see– we apply domain model or knowledge to attach meaningful labels to these data. Then we can apply computational techniques to visualize, provide situational awareness, discovery nuggets of knowledge of information and insight. For example, from all that biomedical data, what a scientist may be looking for is– how can we treat Migraine? What has Magnesium to do with Migraine? Why does Magnesium deficiency cause Migraine? What is the process by which Magnesium affects Migraine?
  3. So what is Kno.e.sis about– it is about stepping away from the concerns of storing and searching data, to that of improving human experience, human effectiveness, human performance, human productivity.
  4. Our 15 faculty from 4 colleges are already engaged in multiple jointly funded grants, pending proposals, serving on interdisciplinary programs like Biomedical Sciences PhD program and on committees of students of colleagues.
  5. This work has been developed in collaboration with my peers at Kno.e.sis, Pablo N. Mendes and Dr. Cartic Ramakrishnan who is at ISI-University Southern California. Our Advisor is IEEE Fellow, Professor Amit Sheth.
  6. This work has been developed in collaboration with my peers at Kno.e.sis, Pablo N. Mendes and Dr. Cartic Ramakrishnan who is at ISI-University Southern California. Our Advisor is IEEE Fellow, Professor Amit Sheth.
  7. This work has been developed in collaboration with my peers at Kno.e.sis, Pablo N. Mendes and Dr. Cartic Ramakrishnan who is at ISI-University Southern California. Our Advisor is IEEE Fellow, Professor Amit Sheth.
  8. This work has been developed in collaboration with my peers at Kno.e.sis, Pablo N. Mendes and Dr. Cartic Ramakrishnan who is at ISI-University Southern California. Our Advisor is IEEE Fellow, Professor Amit Sheth.
  9. This work has been developed in collaboration with my peers at Kno.e.sis, Pablo N. Mendes and Dr. Cartic Ramakrishnan who is at ISI-University Southern California. Our Advisor is IEEE Fellow, Professor Amit Sheth.
  10. The last representative work we’d like to share with you is our work on making sense of social data, like those from Twitter and facebookaround news worthy events that are of interest to a populace.The goal is to offer an understanding of what people are talking about and paying attention to
  11. What the social perceptions behind the data might be, the multiple narratives
  12. Twitris is our effort in this direction to help users keep up with observations made around news-worthy events.. Before I hand over the microphone to Dr. Mike Raymer, I’d like to leave you with a short demo of the deployed web application.
  13. Let me start by offering my appreciation for our Chancellor Dr. Fingerhut’s visionary leadership in establishing the Ohio Center of Excellence program that identifies Centers and program that generate world-class research and help draw talent and investment to the state. I would be remiss if I did not call out tremendous leadership that our President Dr. Hopkins and his entire leadership team has shown in regards to identifying and promoting these centers– my tanks to Dr. Angle, Dr. Bantle. Dr. Jang, and Dr. Sudkamp– thanks for your early and steadfast support for Kno.e.sis.