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Rpg1-mediated durable stem rust
resistance: mechanisms of action

        A. Kleinhofs, J. Nirmala,
   R. Brueggeman and B. Steffenson
Acknowledgments
       Multiyear support by USDA/NRI/AFRI to
A. Kleinhofs and B. J. Steffenson and collaboration with
            D. von Wettstein and S. Hulbert
   past                                    current
Dave Kudrna                            Jayaveeramuthu Nirmala
Andrzej Kilian                         Robert Brueggeman
Feng Han
                                       Tom Drader
Arnis Druka
Nils Rostoks
Henriette Horvath
Stephanie Dahl
   Research was supported by the United States Department of Agriculture
    Cooperative State Research, Education, and Extension Service Grants
       #2007-35301-18205 and #2010-65108-20568. to A.K. and B.J.S.
Morex/Chevron       GP/transgenic




  GP vs. Chevron   Morex vs. Chevron
Novel gene structure
Genomic DNA

Exon 1 2       3      4   5   6    7     8       9 10 11 12 13      14
  5’UTR                                                                  3’UTR
TATA ATG                                                            TGA

cDNA




Protein
           1        110                                             837 a.a.

                          Pkinase1
                          Pkinase1                 Pkinase2
                                                   Pkinase2
           TMD

                                  (Brueggeman et al. (2002) PNAS)
Rpg1 is constitutively transcribed at low levels in all
                   tissues tested



                                               Quantification of the Rpg1 mRNA
      Percent of actin mRNA




                              16.00
                              14.00
                              12.00                                                                                11
                                                             9
                              10.00                                             8
                               8.00        6
                               6.00
                               4.00                                                             3
                               2.00                                                                                                      0
                               0.00




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                                                                                Tissue type
Except the epidermis
90.00

80.00
                            72.08
70.00

60.00

50.00
             43.41
40.00

30.00

20.00

10.00                                                 6.54
                                         3.34
                                                                   0.31
 0.00
        Morex epidermis   G02-448D       Morex      G02-448D    Morex whole
                          epidermis    mesophyll    mesophyll       leaf
                                      Tissue type
RPG1 protein in leaf epidermis (LE) compared to
leaf after removal of epidermis (LARE)
In vivo RPG1 phosphorylates within 5 min.
        post inoculation with avirulent Pgt spores.




A: positive control, U : uninoculated control
PS: Phosphoserine, PT: Phosphothreonine
Viable but not inviable MCCF spores elicit
   RPG1 phosphorylation in cv. Morex

                30 min post inoculation




                   PS             PT


  Lanes 1 and 3 inviable spores; 2 and 4 viable spores
RPG1 phosphorylation is race specific



                         1 – positive control
                         2 – uninoculated
                         3 – 15 min. sample
                         PS – phosphoserine AB
                         PT – phosphothreonine AB
In vivo phosphorylation of RPG1 is required, but not
              sufficient for resistance




                                Lane 1: Positive control
                                Lane 2: uninoculated control
                                Lane 3: 15 min. post inoculation
                                PS: Phosphoserine
                                PT: Phosphthreonine
Effect of protein kinase inhibitors on
 Rpg1- mediated disease reaction.




          PKI: Protein kinase inhibitor, PS:
       Phosphoserine, PT: Phosphothreonine
Isolation and characterization of RGD-binding and VPS9-like proteins
RGD-binding and VPS9 proteins together induce in vivo phosphorylation and degradation
of RPG1.



                                                      RGD-binding protein alone induced
                                                      phosphorylation of RPG1




                                                      VPS9 protein alone did not induce phosphorylation
                                                      of RPG1




                                                      VPS9 failed to induce RPG1 degradation up to 48 h after
                                                      application




                                                       Application of both proteins together induced
                                                       RPG1 phosphorylation within 0.25 h and
                                                       degradation prior to 24 h
RGD-binding and the VPS9 proteins together induce HR in barley harboring a functional
 Rpg1 gene




                         A                                      B                                         C




                                                                                                Golden Promise

                                                                                                                 GP-Rpg1/pK1



                                                                                                                               GP-Rpg1/pK2
                                                                                   GP-Rpg1/T1
                             RGD+VPS9
RGD+VPS9




                                                                          ASM170
                                                                Steptoe
                                                        Morex
           VPS9




                                           VPS9


                                                  RGD
                   RGD




           Morex                        Steptoe
RGD-binding and VPS9 proteins interact with RPG1 and with each other in yeast




                                                      VPS9 interacts with the RGD-binding protein




                                                      RPG1 interacts with RGD-binding and VPS9 proteins.
                                                      The RPG1 pK1 and pK2 mutants failed to interact with
                                                      the RGD-binding and the VPS9 proteins.
Summary
*RPG1 phosphorylates in vivo within 5 min
post-spore landing on the leaf surface.

*RPG1 phosphorylation is a highly race specific
event and takes place only with viable spores.


 *RPG1 phosphorylation is required for
 resistance and probably acts as a very early
 signal in pathogen perception.
Summary continued
• Two effector proteins isolated from spores
• Both effectors required to mimic spore
  function
• Phenotypes tested: RPG1 phosphorylation &
  degradation &host hypersensitive response
• RGD-binding and VPS9 proteins interact with
  RPG1 and with each other in yeast
• RGD-binding protein may interact with
  unknown RGD motif protein(s)
Speculation
• RGD-binding protein interacts with RPG1 and
  possibly other proteins at the cell membrane
• RPG1 does not have an RGD motif – another
  protein may be the receptor
• RPG1 is phosphorylated and signals to initiate
  the defense response
• RPG1 degradation may release defense
  complex from negative regulation or it may
  suppress runaway HR
Conserved domains of Rpg1 and
            JAK
Protein degradation is not sufficient for
          disease resistance
0   12 16    20 24   48   0   12 16     20 24   48


G03-448F-3R                   Chevron


0   12 16    20 24   48   0   12 16     20 24   48



     Morex                       rpr1



0   12 16    20 24   48   0   12 16     20 24   48


     Beacon                     OSU6
RPG1 protein elevated in Leaf Epidermis (LE)
    compared to rest of the tissue (LARE)

7
                                  RPG1 protein (micromoles of
6                                 RPG1/g total protein)


5

4

3

2

1

0
               LE                       LARE
RPG1 phosphorylation is race specific


                         PS: Phosphoserine
                         PT: Phosphothreonine




                       Lane 1: Positive control
                       Lane 2: uninoculated control
                       Lane 3: 15 min. post inoculation

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rpg1-mediated Durable Stem Rust Resistance: Mechanisms of action

  • 1. Rpg1-mediated durable stem rust resistance: mechanisms of action A. Kleinhofs, J. Nirmala, R. Brueggeman and B. Steffenson
  • 2. Acknowledgments Multiyear support by USDA/NRI/AFRI to A. Kleinhofs and B. J. Steffenson and collaboration with D. von Wettstein and S. Hulbert past current Dave Kudrna Jayaveeramuthu Nirmala Andrzej Kilian Robert Brueggeman Feng Han Tom Drader Arnis Druka Nils Rostoks Henriette Horvath Stephanie Dahl Research was supported by the United States Department of Agriculture Cooperative State Research, Education, and Extension Service Grants #2007-35301-18205 and #2010-65108-20568. to A.K. and B.J.S.
  • 3. Morex/Chevron GP/transgenic GP vs. Chevron Morex vs. Chevron
  • 4. Novel gene structure Genomic DNA Exon 1 2 3 4 5 6 7 8 9 10 11 12 13 14 5’UTR 3’UTR TATA ATG TGA cDNA Protein 1 110 837 a.a. Pkinase1 Pkinase1 Pkinase2 Pkinase2 TMD (Brueggeman et al. (2002) PNAS)
  • 5. Rpg1 is constitutively transcribed at low levels in all tissues tested Quantification of the Rpg1 mRNA Percent of actin mRNA 16.00 14.00 12.00 11 9 10.00 8 8.00 6 6.00 4.00 3 2.00 0 0.00 e f t ise g f o lea nc ea lin ro m el e ed g sc g ro in r in se atu re nP dl dl lo ed e M e e f Se Se ld lat In Go io Et Tissue type
  • 6. Except the epidermis 90.00 80.00 72.08 70.00 60.00 50.00 43.41 40.00 30.00 20.00 10.00 6.54 3.34 0.31 0.00 Morex epidermis G02-448D Morex G02-448D Morex whole epidermis mesophyll mesophyll leaf Tissue type
  • 7. RPG1 protein in leaf epidermis (LE) compared to leaf after removal of epidermis (LARE)
  • 8.
  • 9. In vivo RPG1 phosphorylates within 5 min. post inoculation with avirulent Pgt spores. A: positive control, U : uninoculated control PS: Phosphoserine, PT: Phosphothreonine
  • 10. Viable but not inviable MCCF spores elicit RPG1 phosphorylation in cv. Morex 30 min post inoculation PS PT Lanes 1 and 3 inviable spores; 2 and 4 viable spores
  • 11. RPG1 phosphorylation is race specific 1 – positive control 2 – uninoculated 3 – 15 min. sample PS – phosphoserine AB PT – phosphothreonine AB
  • 12. In vivo phosphorylation of RPG1 is required, but not sufficient for resistance Lane 1: Positive control Lane 2: uninoculated control Lane 3: 15 min. post inoculation PS: Phosphoserine PT: Phosphthreonine
  • 13. Effect of protein kinase inhibitors on Rpg1- mediated disease reaction. PKI: Protein kinase inhibitor, PS: Phosphoserine, PT: Phosphothreonine
  • 14.
  • 15.
  • 16. Isolation and characterization of RGD-binding and VPS9-like proteins
  • 17. RGD-binding and VPS9 proteins together induce in vivo phosphorylation and degradation of RPG1. RGD-binding protein alone induced phosphorylation of RPG1 VPS9 protein alone did not induce phosphorylation of RPG1 VPS9 failed to induce RPG1 degradation up to 48 h after application Application of both proteins together induced RPG1 phosphorylation within 0.25 h and degradation prior to 24 h
  • 18. RGD-binding and the VPS9 proteins together induce HR in barley harboring a functional Rpg1 gene A B C Golden Promise GP-Rpg1/pK1 GP-Rpg1/pK2 GP-Rpg1/T1 RGD+VPS9 RGD+VPS9 ASM170 Steptoe Morex VPS9 VPS9 RGD RGD Morex Steptoe
  • 19. RGD-binding and VPS9 proteins interact with RPG1 and with each other in yeast VPS9 interacts with the RGD-binding protein RPG1 interacts with RGD-binding and VPS9 proteins. The RPG1 pK1 and pK2 mutants failed to interact with the RGD-binding and the VPS9 proteins.
  • 20. Summary *RPG1 phosphorylates in vivo within 5 min post-spore landing on the leaf surface. *RPG1 phosphorylation is a highly race specific event and takes place only with viable spores. *RPG1 phosphorylation is required for resistance and probably acts as a very early signal in pathogen perception.
  • 21. Summary continued • Two effector proteins isolated from spores • Both effectors required to mimic spore function • Phenotypes tested: RPG1 phosphorylation & degradation &host hypersensitive response • RGD-binding and VPS9 proteins interact with RPG1 and with each other in yeast • RGD-binding protein may interact with unknown RGD motif protein(s)
  • 22. Speculation • RGD-binding protein interacts with RPG1 and possibly other proteins at the cell membrane • RPG1 does not have an RGD motif – another protein may be the receptor • RPG1 is phosphorylated and signals to initiate the defense response • RPG1 degradation may release defense complex from negative regulation or it may suppress runaway HR
  • 23. Conserved domains of Rpg1 and JAK
  • 24.
  • 25.
  • 26.
  • 27.
  • 28. Protein degradation is not sufficient for disease resistance 0 12 16 20 24 48 0 12 16 20 24 48 G03-448F-3R Chevron 0 12 16 20 24 48 0 12 16 20 24 48 Morex rpr1 0 12 16 20 24 48 0 12 16 20 24 48 Beacon OSU6
  • 29.
  • 30. RPG1 protein elevated in Leaf Epidermis (LE) compared to rest of the tissue (LARE) 7 RPG1 protein (micromoles of 6 RPG1/g total protein) 5 4 3 2 1 0 LE LARE
  • 31. RPG1 phosphorylation is race specific PS: Phosphoserine PT: Phosphothreonine Lane 1: Positive control Lane 2: uninoculated control Lane 3: 15 min. post inoculation