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Foundations in Microbiology
          Fifth Edition

                                        Talaro
                                     Chapter
                                       9

    Copyright The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
Microbial Genetics
      Chapter 9      2
Genetics – the study of heredity
1. transmission of biological traits from
   parent to offspring
2. expression & variation of those traits
3. structure & function of genetic material
4. how this material changes



                                              3
Levels of genetic study




                          4
Levels of structure & function of the
                  genome
• genome – sum total of genetic material of an organism
  (chromosomes + mitochondria/chloroplasts and/or
  plasmids)
   – genome of cells – DNA
   – genome of viruses – DNA or RNA
• chromosome – length of DNA containing genes
• gene-fundamental unit of heredity responsible for
  a given trait
   – site on the chromosome that provides information for
     a certain cell function
   – segment of DNA that contains the necessary code to
     make a protein or RNA molecule                   5
Genomes vary in size
• smallest virus – 4-5 genes
• E. coli – single chromosome containing
  4,288 genes; 1 mm; 1,000X longer than cell
• Human cell – 46 chromosomes containing
  31,000 genes; 6 feet; 180,000X longer than
  cell


                                           6
7
• Nucleic acids are made of nucleotides
  similar to how proteins are made of amino
  acids
• each nucleotide consists of 3 parts
  – a 5 carbon sugar (deoxyribose or ribose)
  – a phosphate group
  – a nitrogenous base (adenine, thymine, cytosine,
    guanine, and uracil)


                                                      8
DNA structure
• 2 strands twisted into a helix
• sugar -phosphate backbone
• nitrogenous bases form steps in ladder
  – constancy of base pairing
  – A binds to T with 2 hydrogen bonds
  – G binds to C with 3 hydrogen bonds
• antiparallel strands 3’to 5’ and 5’to 3’
• each strand provides a template for the exact
  copying of a new strand
• order of bases constitutes the DNA code         9
10
Significance of DNA structure
1. Maintenance of code during reproduction.
   Constancy of base pairing guarantees that
   the code will be retained.
2. Providing variety. Order of bases
   responsible for unique qualities of each
   organism.


                                           11
DNA replication is
semiconservative because each
 chromosome ends up with one
new strand of DNA and one old
            strand.
Semi-conservative replication of DNA




                                  13
DNA replication
• Begins at an origin of replication
• Helicase unwinds and unzips the DNA double
  helix
• An RNA primer is synthesized
• DNA polymerase III adds nucleotides in a 5’ to 3’
  direction
• Leading strand – synthesized continuously in 5’
  to 3’ direction
• Lagging strand – synthesized 5’ to 3’ in short
  segments; overall direction is 3’ to 5’
                                                  14
Bacterial replicon




                     15
Flow of genetic information




                              16
• What are the products that genes encode?
  – RNAs and proteins
• How are genes expressed?
  – transcription and translation




                                             17
Gene expression
• Transcription – DNA is used to synthesize
  RNA
  – RNA polymerase is the enzyme responsible
• Translation –making a protein using the
  information provided by messenger RNA
  – occurs on ribosomes



                                               18
• Genotype - genes encoding all the potential
  characteristics of an individual
• Phenotype -actual expressed genes of an
  individual (its collection of proteins)




                                            19
DNA-protein relationship
1. Each triplet of nucleotides (codon) specifies
   a particular amino acid.
2. A protein’s primary structure determines its
   shape & function.
3. Proteins determine phenotype. Living things
   are what their proteins make them.
4. DNA is mainly a blueprint that tells the cell
   which kinds of proteins to make and how to
   make them.
                                             20
DNA-protein relationship




                           21
3 types of RNA
•   messenger RNA (mRNA)
•   transfer RNA (tRNA)
•   ribosomal RNA (rRNA)




                           22
23
DNA
    Transcription
    RNA polymerase

 RNA
     Translation
     ribosomes

PROTEINS
                     24
Transcription
1. RNA polymerase binds to promoter region
   upstream of the gene
2. RNA polymerase adds nucleotides
   complementary to the template strand of a
   segment of DNA in the 5’ to 3’ direction
3. Uracil is placed as adenine’s complement
4. At termination, RNA polymerase recognizes
   signals and releases the transcript
• 100-1,200 bases long

                                               25
Transcription




                26
Translation
• Ribosomes assemble on the 5’ end of a
  mRNA transcript
• Ribosome scans the mRNA until it reaches
  the start codon, usually AUG
• A tRNA molecule with the complementary
  anticodon and methionine amino acid enters
  the P site of the ribosome & binds to the
  mRNA

                                           27
Translation




              28
29
Interpreting the DNA code




                            30
Translation elongation
• A second tRNA with the complementary
  anticodon fills the A site
• A peptide bond is formed
• The first tRNA is released and the ribosome slides
  down to the next codon.
• Another tRNA fills the A site & a peptide bond is
  formed.
• This process continues until a stop codon is
  encountered.
                                                   31
32
Translation termination
• Termination codons – UAA, UAG, and
  UGA – are codons for which there is no
  corresponding tRNA.
• When this codon is reached, the ribosome
  falls off and the last tRNA is removed from
  the polypeptide.


                                            33
Polyribosomal complex




                        34
Eucaryotic transcription &
translation differs from procaryotic
1. Do not occur simultaneously. Transcription
   occurs in the nucleus and translation occurs in
   the cytoplasm.
2. Eucaryotic start codon is AUG, but it does not
   use formyl-methionine.
3. Eucaryotic mRNA encodes a single protein,
   unlike bacterial mRNA which encodes many.
4. Eucaryotic DNA contains introns – intervening
   sequences of noncoding DNA- which have to be
   spliced out of the final mRNA transcript.
                                                 35
Split gene of eucaryotes




                           36
Multiplication of dsDNA viruses




                              37
Multiplication of +ssRNA




                           38
Regulation of protein synthesis &
          metabolism
Operons
• a coordinated set of genes, all of which are
  regulated as a single unit.
• 2 types
  – inducible – operon is turned ON by substrate:
    catabolic operons- enzymes needed to metabolize
    a nutrient are produced when needed
  – repressible – genes in a series are turned OFF by
    the product synthesized; anabolic operon –
    enzymes used to synthesize an amino acid stop
    being produced when they are not needed
                                                  40
Lactose operon: inducible operon
Made of 3 segments:
• Regulator- gene that codes for repressor
• Control locus- composed of promoter and
  operator
• Structural locus- made of 3 genes each coding
  for an enzyme needed to catabolize lactose –
  β-galactosidase – hydolyzes lactose
  permease - brings lactose across cell membrane
  β-galactosidase transacetylase – uncertain function

                                                        41
Lac operon
• Normally off
  – In the absence of lactose the repressor binds
    with the operator locus and blocks transcription
    of downstream structural genes
• Lactose turns the operon on
  – Binding of lactose to the repressor protein
    changes its shape and causes it to fall off the
    operator. RNA polymerase can bind to the
    promoter. Structural genes are transcribed.
                                                      42
Lactose operon




                 43
Arginine operon: repressible
• Normally on and will be turned off when
  nutrient is no longer needed.
• When excess arginine is present, it binds to
  the repressor and changes it. Then the
  repressor binds to the operator and blocks
  arginine synthesis.


                                             44
Repressible operon




                     45
Antibiotics that affect gene
            expression
• Rifamycin – binds to RNA polymerase
• Actinomycin D - binds to DNA & halts mRNA
  chain elongation
• Erythromycin & spectinomycin – interfere with
  attachment of mRNA to ribosomes
• Chloramphenicol, linomycin & tetracycline-bind
  to ribosome and block elongation
• Streptomycin – inhibits peptide initiation &
  elongation
                                                   46
Mutations – changes in the DNA
• Point mutation – addition, deletion or
  substitution of a few bases
• Missense mutation – causes change in a
  single amino acid
• Nonsense mutation – changes a normal
  codon into a stop codon
• Silent mutation – alters a base but does not
  change the amino acid
                                                 47
Excision repair




                  48
Ames Test




            49
Types of intermicrobial exchange
conjugation      requires the attachment of two
                 related species & formation of a
                 bridge that can transport DNA
transformation   transfer of naked DNA


transduction     DNA transfer mediated by
                 bacterial virus

                                                    50
conjugation




              51
transformation




                 52
Generalized transduction




                           53
Specialized transduction




                           54
Transposons –DNA segments that shift
from one part of the genome to another




                                    55

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Dna & gene therapy

  • 1. PowerPoint to accompany Foundations in Microbiology Fifth Edition Talaro Chapter 9 Copyright The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
  • 2. Microbial Genetics Chapter 9 2
  • 3. Genetics – the study of heredity 1. transmission of biological traits from parent to offspring 2. expression & variation of those traits 3. structure & function of genetic material 4. how this material changes 3
  • 5. Levels of structure & function of the genome • genome – sum total of genetic material of an organism (chromosomes + mitochondria/chloroplasts and/or plasmids) – genome of cells – DNA – genome of viruses – DNA or RNA • chromosome – length of DNA containing genes • gene-fundamental unit of heredity responsible for a given trait – site on the chromosome that provides information for a certain cell function – segment of DNA that contains the necessary code to make a protein or RNA molecule 5
  • 6. Genomes vary in size • smallest virus – 4-5 genes • E. coli – single chromosome containing 4,288 genes; 1 mm; 1,000X longer than cell • Human cell – 46 chromosomes containing 31,000 genes; 6 feet; 180,000X longer than cell 6
  • 7. 7
  • 8. • Nucleic acids are made of nucleotides similar to how proteins are made of amino acids • each nucleotide consists of 3 parts – a 5 carbon sugar (deoxyribose or ribose) – a phosphate group – a nitrogenous base (adenine, thymine, cytosine, guanine, and uracil) 8
  • 9. DNA structure • 2 strands twisted into a helix • sugar -phosphate backbone • nitrogenous bases form steps in ladder – constancy of base pairing – A binds to T with 2 hydrogen bonds – G binds to C with 3 hydrogen bonds • antiparallel strands 3’to 5’ and 5’to 3’ • each strand provides a template for the exact copying of a new strand • order of bases constitutes the DNA code 9
  • 10. 10
  • 11. Significance of DNA structure 1. Maintenance of code during reproduction. Constancy of base pairing guarantees that the code will be retained. 2. Providing variety. Order of bases responsible for unique qualities of each organism. 11
  • 12. DNA replication is semiconservative because each chromosome ends up with one new strand of DNA and one old strand.
  • 14. DNA replication • Begins at an origin of replication • Helicase unwinds and unzips the DNA double helix • An RNA primer is synthesized • DNA polymerase III adds nucleotides in a 5’ to 3’ direction • Leading strand – synthesized continuously in 5’ to 3’ direction • Lagging strand – synthesized 5’ to 3’ in short segments; overall direction is 3’ to 5’ 14
  • 16. Flow of genetic information 16
  • 17. • What are the products that genes encode? – RNAs and proteins • How are genes expressed? – transcription and translation 17
  • 18. Gene expression • Transcription – DNA is used to synthesize RNA – RNA polymerase is the enzyme responsible • Translation –making a protein using the information provided by messenger RNA – occurs on ribosomes 18
  • 19. • Genotype - genes encoding all the potential characteristics of an individual • Phenotype -actual expressed genes of an individual (its collection of proteins) 19
  • 20. DNA-protein relationship 1. Each triplet of nucleotides (codon) specifies a particular amino acid. 2. A protein’s primary structure determines its shape & function. 3. Proteins determine phenotype. Living things are what their proteins make them. 4. DNA is mainly a blueprint that tells the cell which kinds of proteins to make and how to make them. 20
  • 22. 3 types of RNA • messenger RNA (mRNA) • transfer RNA (tRNA) • ribosomal RNA (rRNA) 22
  • 23. 23
  • 24. DNA Transcription RNA polymerase RNA Translation ribosomes PROTEINS 24
  • 25. Transcription 1. RNA polymerase binds to promoter region upstream of the gene 2. RNA polymerase adds nucleotides complementary to the template strand of a segment of DNA in the 5’ to 3’ direction 3. Uracil is placed as adenine’s complement 4. At termination, RNA polymerase recognizes signals and releases the transcript • 100-1,200 bases long 25
  • 27. Translation • Ribosomes assemble on the 5’ end of a mRNA transcript • Ribosome scans the mRNA until it reaches the start codon, usually AUG • A tRNA molecule with the complementary anticodon and methionine amino acid enters the P site of the ribosome & binds to the mRNA 27
  • 29. 29
  • 31. Translation elongation • A second tRNA with the complementary anticodon fills the A site • A peptide bond is formed • The first tRNA is released and the ribosome slides down to the next codon. • Another tRNA fills the A site & a peptide bond is formed. • This process continues until a stop codon is encountered. 31
  • 32. 32
  • 33. Translation termination • Termination codons – UAA, UAG, and UGA – are codons for which there is no corresponding tRNA. • When this codon is reached, the ribosome falls off and the last tRNA is removed from the polypeptide. 33
  • 35. Eucaryotic transcription & translation differs from procaryotic 1. Do not occur simultaneously. Transcription occurs in the nucleus and translation occurs in the cytoplasm. 2. Eucaryotic start codon is AUG, but it does not use formyl-methionine. 3. Eucaryotic mRNA encodes a single protein, unlike bacterial mRNA which encodes many. 4. Eucaryotic DNA contains introns – intervening sequences of noncoding DNA- which have to be spliced out of the final mRNA transcript. 35
  • 36. Split gene of eucaryotes 36
  • 39. Regulation of protein synthesis & metabolism
  • 40. Operons • a coordinated set of genes, all of which are regulated as a single unit. • 2 types – inducible – operon is turned ON by substrate: catabolic operons- enzymes needed to metabolize a nutrient are produced when needed – repressible – genes in a series are turned OFF by the product synthesized; anabolic operon – enzymes used to synthesize an amino acid stop being produced when they are not needed 40
  • 41. Lactose operon: inducible operon Made of 3 segments: • Regulator- gene that codes for repressor • Control locus- composed of promoter and operator • Structural locus- made of 3 genes each coding for an enzyme needed to catabolize lactose – β-galactosidase – hydolyzes lactose permease - brings lactose across cell membrane β-galactosidase transacetylase – uncertain function 41
  • 42. Lac operon • Normally off – In the absence of lactose the repressor binds with the operator locus and blocks transcription of downstream structural genes • Lactose turns the operon on – Binding of lactose to the repressor protein changes its shape and causes it to fall off the operator. RNA polymerase can bind to the promoter. Structural genes are transcribed. 42
  • 44. Arginine operon: repressible • Normally on and will be turned off when nutrient is no longer needed. • When excess arginine is present, it binds to the repressor and changes it. Then the repressor binds to the operator and blocks arginine synthesis. 44
  • 46. Antibiotics that affect gene expression • Rifamycin – binds to RNA polymerase • Actinomycin D - binds to DNA & halts mRNA chain elongation • Erythromycin & spectinomycin – interfere with attachment of mRNA to ribosomes • Chloramphenicol, linomycin & tetracycline-bind to ribosome and block elongation • Streptomycin – inhibits peptide initiation & elongation 46
  • 47. Mutations – changes in the DNA • Point mutation – addition, deletion or substitution of a few bases • Missense mutation – causes change in a single amino acid • Nonsense mutation – changes a normal codon into a stop codon • Silent mutation – alters a base but does not change the amino acid 47
  • 49. Ames Test 49
  • 50. Types of intermicrobial exchange conjugation requires the attachment of two related species & formation of a bridge that can transport DNA transformation transfer of naked DNA transduction DNA transfer mediated by bacterial virus 50
  • 55. Transposons –DNA segments that shift from one part of the genome to another 55