Rice Emboss Bosc2009

EMBOSS European Molecular Biology Open Software Suite Peter Rice pmr@ebi.ac.uk

A quick introduction ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09

A near death experience ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC EMBOSS 2009 29.06.09

Who do we serve? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09

EMBOSS World Wide BOSC: EMBOSS 2009 29.06.09 We have users in every continent - and a picture to prove it. This is British Antarctica. We are promised another photo from the frozen North The first EMBOSS course was in Beijing, April 1999. The wEMBOSS interface is from Canada, Argentina and Belgium

EMBOSS command line interface ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09

EMBOSS command line example ,[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09

EMBOSS ACD File ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09 integer: minlen [ standard: "Y" minimum: "1" maximum: "50" default: "6" information: "Minimum length of antigenic region" ] endsection: required section: output [ information: "Output section" type: "page" ] report: outfile [ parameter: "Y" rformat: "motif" multiple: "Y" taglist: "int:pos=Max_score_pos" ] endsection: output

EMBOSS makes things easy ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09

EMBOSS Web Interface BOSC: EMBOSS 2009 29.06.09 http://emboss.ch.embnet.org/wEMBOSS/

EMBOSS SoapLab Service BOSC: EMBOSS 2009 29.06.09 MyGrid/EMBRACE projects: for use by Taverna Workflows

EMBOSS User Survey BOSC: EMBOSS 2009 29.06.09

EMBOSS Update ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09

EMBOSS Future plans ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09

The Emboss Team BOSC: EMBOSS 2009 29.06.09 Peter Rice Alan Bleasby Jon Ison Mahmut Uludag Mon 12:15 Technology Track Mon 17:45 Poster U43 Wed 13:00 Birds of a Feather

Acknowledgements ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOSC: EMBOSS 2009 29.06.09

Rice Emboss Bosc2009

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