1. MOLGENIS and the eXtensible Genotype And Phenotype database project (xgap) Morris A. Swertz et al DAM & BOSC sigs Stockholm, June 27 2009 EBI Biobanking platform
21. 1. Model / DATA (matrix) TRAIT SUBJECT DATA ELEMENT TRAIT SUBJECT
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25. UML: XGAP extends FuGE m.a.swertz@rug.nl / Uniform core to ease sharing of data and tools Various traits for new research Various subjects for new research ? ?
27. Connect to R statistics Workflow ready web-services UML documentation of your model Edit & trace your data Import/export to Excel plugin your own scripts (R/QTL) Tech keywords: object oriented data models, multi-platform java, tomcat/glassfish web server, mysql/postgresql database, Eclipse/Netbeans IDE, Java API, WSDL/SOAP API, R-project API, MVC, freemarker templates and css for custom layout, open source.
30. Next step: add processing Sheets thanks to Joeri van der Velde and Danny Arends Generalize for all MOLGENIS instances: (1) Extend MOLGENIS model for tool integration <tool name=“rqtl”> <input name=“data” entity=“data”/> … </tool> (2) Integrate workflow definition and execution Extending on Taverna/Galaxy model & APIs…
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Notes de l'éditeur
International data standards: adopt them but preserve flexibility Flexible (standard) data models: ease extension ‘beyond’ today for new research Dynamic software infrastructure: how to ensure a long life (30 yrs!)