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Host Defense
                                    Dicer
Animals                                                          Fig. 8.16
                          dsRNA

  – immune system                               Dicer cleaves dsRNA
                                                into shorter segments

  – RNA interference      siRNA
    (RNAi)
                                  RISC
    • Dicer – dsRNA                                            RISC complex
                                                            binds siRNA and
      nuclease                                                 separates the
                                                                     strands
    • siRNA – short
                                                          RISC complex finds
      interfering RNA                                   mRNA complementary
                                                                   to siRNA
    • RISC – RNA-
                          mRNA
      induced silencing
      complex                                             RISC cleaves mRNA
    • Slicer – ssRNA
      nuclease                              RNA fragments degraded by Slicer
Fig. 20-7a in the 11th edition
Chemical antimicrobial agents used to control
    microorganisms that are harmful to humans:

      Sterilants   destroy all forms of microbial life
;   Disinfectants kill microorganisms, but endospores
                  are typically resistant
     Sanitizers    reduce the microbial load but may
                   not eliminate all microorganisms
     Antiseptics kill or inhibit growth of
    & Germicides microorganisms on living tissue
1888-1955 Alexander Fleming




1929 discovered antimicrobial effects of
  penicillin G made by the fungus Penicillium
  on Staphylococcus by chance
1945 Nobel Prize in Medicine -
  Fleming, Howard Walter Florey and
     Ernst Boris Chain
Vancomycin
• Glycopeptide antibiotic
• Binds to pentapeptide of the
  peptidoglycan precursor
• Produced by a soil microbe
  Amycolatopsis orientalis
• Effective against Gram-
  positive Bacteria
Platensimycin
• Produced by Streptomyces platensis
• Inhibits fatty acid biosynthesis enzyme




     Fig. 27.25
An example of an echinocandin
An example of a polyoxin
Bacterial cell with
  chromosomal mutation             Bacterial cell not
altering target of antibiotic    resistant to antibiotic

  resistant to antibiotic

                  Transformation
                Transfer of free DNA
  Lysis of cell

                                       Previously
                                       susceptible cell
                                       is now resistant
                                       to antibiotic
Bacterial cell with R plasmid        Bacterial cell not
    resistant to antibiotic         resistant to antibiotic


Chromosomal DNA         Conjugation
                     Copy and Transfer of R plasmid




                                           Previously
                                           susceptible cell
                                           is now resistant
                                           to antibiotic
Fig. 27.29                                  Candida albicans *
            Key:                                       Acinetobacter sp.
                 Gram-negative                 Enterococcus faecium*
                 Gram-positive
                                         Streptococcus pneumoniae
                 Gram-positive/
                 acid-fast               Mycobacterium tuberculosis*
                 Fungus
                                         Haemophilus ducreyi
                                         Salmonella typhi
Antimicrobial                      Haemophilus influenzae
 drug resistance                   Neisseria gonorrhoeae
 human pathogens             Pseudomonas aeruginosa*

 continue to                 Salmonella sp.

 emerge.                    Shigella dysenteriae
                         Shigella sp.

                    Other gram-negative rods
           Staphylococcus aureus*

          1950       1960         1970     1980      1990      2000        2010
                                           Year
Eon    Billion Evolutionary Oxygen Metabolic and
Fig. 14.7                years ago   event      level other highlights
Comparable to
                                 0                          Extinction of the dinosaurs
Fig. 11.8 in the
                   Phanaerozoic                                    Cambrian
11th edition
                              0.5    Early animals


                                     Multicellular        20%
                              1.0    eukaryotes
                                                                   Precambrian
                                                          10%
                   Proterozoic
                              1.5


                                     First eukaryotes     1%       Ozone shield
                              2.0

                                     Great oxidation      0.1%
                              2.5        event

                                     Cyanobacteria               Oxygenic photosynthesis
                              3.0                                  (2H2O    O2 + 4H)
                   Archaean
                                     Purple and green      Anoxygenic photosynthesis
                              3.5    bacteria                  (H2S   S0 + 2H)
                                                        Anoxic

                                     First cellular                 Methanogenesis
                              4.0    life                      (CO2 + 4H2   CH4 + 2H2O)
                   Hadean            Formation of
                                     crust and ocean
                              4.5    Formation of Earth
Fig. 11-9 in the
            11th edition




       (oxygenic)



(aerobic)
The Hydrogen Hypothesis – how the
   first eukaryotic was formed?

Host cell -
Archaea
                                    Symbiont cell -
dependent on
                                    Bacteria
H2 for electron
                                    producing H2;
source to make
                                    lipid gene transfer;
energy
                                    precursor of
                  Symbiont cell –
                                    mitochondrion
                  photosynthetic
                  cyanobacterial-
                  like ancestor
Fig. 14.15




Fig. 14.14


    Fan-shaped


                        Dichotomous




                 outgroup
Branches show order of descent and node ancestry.
Branch length reprepresents number of nucleotide changes


                                      Fig. 14.14d




 Internal nodes
 denote common
 ancestor
                                 Nodes at the tips
                                 denote species/strains
Fig. 11.20 in
11th edition
Fig. 11.21
in 11th
edition

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bah

  • 1. Host Defense Dicer Animals Fig. 8.16 dsRNA – immune system Dicer cleaves dsRNA into shorter segments – RNA interference siRNA (RNAi) RISC • Dicer – dsRNA RISC complex binds siRNA and nuclease separates the strands • siRNA – short RISC complex finds interfering RNA mRNA complementary to siRNA • RISC – RNA- mRNA induced silencing complex RISC cleaves mRNA • Slicer – ssRNA nuclease RNA fragments degraded by Slicer
  • 2.
  • 3. Fig. 20-7a in the 11th edition
  • 4. Chemical antimicrobial agents used to control microorganisms that are harmful to humans: Sterilants destroy all forms of microbial life ; Disinfectants kill microorganisms, but endospores are typically resistant Sanitizers reduce the microbial load but may not eliminate all microorganisms Antiseptics kill or inhibit growth of & Germicides microorganisms on living tissue
  • 5. 1888-1955 Alexander Fleming 1929 discovered antimicrobial effects of penicillin G made by the fungus Penicillium on Staphylococcus by chance 1945 Nobel Prize in Medicine - Fleming, Howard Walter Florey and Ernst Boris Chain
  • 6. Vancomycin • Glycopeptide antibiotic • Binds to pentapeptide of the peptidoglycan precursor • Produced by a soil microbe Amycolatopsis orientalis • Effective against Gram- positive Bacteria
  • 7. Platensimycin • Produced by Streptomyces platensis • Inhibits fatty acid biosynthesis enzyme Fig. 27.25
  • 8. An example of an echinocandin
  • 9. An example of a polyoxin
  • 10. Bacterial cell with chromosomal mutation Bacterial cell not altering target of antibiotic resistant to antibiotic resistant to antibiotic Transformation Transfer of free DNA Lysis of cell Previously susceptible cell is now resistant to antibiotic
  • 11. Bacterial cell with R plasmid Bacterial cell not resistant to antibiotic resistant to antibiotic Chromosomal DNA Conjugation Copy and Transfer of R plasmid Previously susceptible cell is now resistant to antibiotic
  • 12. Fig. 27.29 Candida albicans * Key: Acinetobacter sp. Gram-negative Enterococcus faecium* Gram-positive Streptococcus pneumoniae Gram-positive/ acid-fast Mycobacterium tuberculosis* Fungus Haemophilus ducreyi Salmonella typhi Antimicrobial Haemophilus influenzae drug resistance Neisseria gonorrhoeae human pathogens Pseudomonas aeruginosa* continue to Salmonella sp. emerge. Shigella dysenteriae Shigella sp. Other gram-negative rods Staphylococcus aureus* 1950 1960 1970 1980 1990 2000 2010 Year
  • 13. Eon Billion Evolutionary Oxygen Metabolic and Fig. 14.7 years ago event level other highlights Comparable to 0 Extinction of the dinosaurs Fig. 11.8 in the Phanaerozoic Cambrian 11th edition 0.5 Early animals Multicellular 20% 1.0 eukaryotes Precambrian 10% Proterozoic 1.5 First eukaryotes 1% Ozone shield 2.0 Great oxidation 0.1% 2.5 event Cyanobacteria Oxygenic photosynthesis 3.0 (2H2O O2 + 4H) Archaean Purple and green Anoxygenic photosynthesis 3.5 bacteria (H2S S0 + 2H) Anoxic First cellular Methanogenesis 4.0 life (CO2 + 4H2 CH4 + 2H2O) Hadean Formation of crust and ocean 4.5 Formation of Earth
  • 14. Fig. 11-9 in the 11th edition (oxygenic) (aerobic)
  • 15. The Hydrogen Hypothesis – how the first eukaryotic was formed? Host cell - Archaea Symbiont cell - dependent on Bacteria H2 for electron producing H2; source to make lipid gene transfer; energy precursor of Symbiont cell – mitochondrion photosynthetic cyanobacterial- like ancestor
  • 16.
  • 17. Fig. 14.15 Fig. 14.14 Fan-shaped Dichotomous outgroup
  • 18. Branches show order of descent and node ancestry. Branch length reprepresents number of nucleotide changes Fig. 14.14d Internal nodes denote common ancestor Nodes at the tips denote species/strains