BHL Tech Overview for BHL-Europe

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Chris Freeland

Presented at BHL-Europe Kickoff Meeting. Museum für Naturkunde, Berlin 12 May 2009

Technologie Formation

BHL Technology Overview Chris Freeland Technical Director, BHL Director of Bioinformatics, Missouri Botanical Garden

Goals of BHL ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],http://www.biodiversitylibrary.org

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Now Online

Monthly Usage Stats ,[object Object],[object Object]

History ,[object Object],[object Object],[object Object],[object Object]

Distributed ,[object Object],[object Object],[object Object],[object Object]

MOBOT Petabox cluster Internet Archive Image Server MBL

Scanning Operations ,[object Object],[object Object],[object Object],[object Object],[object Object],Locations of BHL/IA Scanning Centers

Workflow Selection Preparation Post Production (Re)publication Digitization Conservation

Open Access Data ,[object Object],[object Object],PDF OCR XML JP2

Complexities of distributed, mass scanning from NYBG from Smithsonian

Derivatives ,[object Object],[object Object],[object Object],[object Object]

Raw Image Converted to text via OCR Name finding via TaxonFinder Extract names Submit to NameBank SOAP response Name Finding in action with Taxonomic Intelligence…

Name Finding Stats to date * ,[object Object],[object Object],[object Object],*12 May 2009

OCR error rate for names only Top OCR errors Study in 2008 found that for sample population of 3,003 names, 1,056 were incorrectly transcribed by OCR. http://biodiversitylibrary.blogspot.com/2008/10/evaluation-of-taxonomic-name-finding.html 1 Insert Space 8 n->v 2 Omit Space 9 l->i 3 e->c 10 r->i 4 u->I 11 u->ii 5 u->n 12 h->l 6 i->l 13 h->ii 7 c->e 14 e->o 35.16%

Current image delivery: djatoka ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

djatoka Browser IIPViewer www.biodiversitylibrary.org .jp2 .jpg IA /page/1274907 pageid: 1274907 BHLdb http://www.archive.org/download/mushroomsofameri00palm/.../mushroomsofameri00palm_0010.jp2 images.biodivlibrary.org A user requests Mushrooms of America, edible and poisonous , Plate X: http://www.biodiversitylibrary.org/page/1274907 locate: BHL/IA architecture St. Louis San Francisco Woods Hole

New delivery option: IA Bookreader ,[object Object],[object Object],[object Object]

IA Book Viewer http://www.us.archive.org/GnuBook/?id=floramedicaodera118diet#229

APIs & Data Sharing ,[object Object],[object Object],[object Object],[object Object]

*Soon: Citation resolver via OpenURL ,[object Object],[object Object]

Article repository ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

http:// cite.biodiversitylibrary.org ,[object Object],[object Object],[object Object],[object Object],[object Object]

BHL Blog ,[object Object],[object Object],[object Object]

Twitter ,[object Object],[object Object],[object Object],[object Object],[object Object]

Technologies in hand: ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Needed: ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Thank you ,[object Object],[object Object],[object Object],[object Object],[object Object]

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BHL Tech Overview for BHL-Europe

1. BHL Technology Overview Chris Freeland Technical Director, BHL Director of Bioinformatics, Missouri Botanical Garden

2. About BHL: Usage, History

7. Architecture

9. MOBOT Petabox cluster Internet Archive Image Server MBL

10.

11. Scanning Workflow

12.

13. Workflow Selection Preparation Post Production (Re)publication Digitization Conservation

14.

15.

16. Complexities of distributed, mass scanning from NYBG from Smithsonian

17. Post Processing & Derivatives

18.

19. Name Finding via TaxonFinder

20. Raw Image Converted to text via OCR Name finding via TaxonFinder Extract names Submit to NameBank SOAP response Name Finding in action with Taxonomic Intelligence…

21.

22. Content Delivery

23.

24.

25. OCR error rate for names only Top OCR errors Study in 2008 found that for sample population of 3,003 names, 1,056 were incorrectly transcribed by OCR. http://biodiversitylibrary.blogspot.com/2008/10/evaluation-of-taxonomic-name-finding.html 1 Insert Space 8 n->v 2 Omit Space 9 l->i 3 e->c 10 r->i 4 u->I 11 u->ii 5 u->n 12 h->l 6 i->l 13 h->ii 7 c->e 14 e->o 35.16%

26.

27. djatoka Browser IIPViewer www.biodiversitylibrary.org .jp2 .jpg IA /page/1274907 pageid: 1274907 BHLdb http://www.archive.org/download/mushroomsofameri00palm/.../mushroomsofameri00palm_0010.jp2 images.biodivlibrary.org A user requests Mushrooms of America, edible and poisonous , Plate X: http://www.biodiversitylibrary.org/page/1274907 locate: BHL/IA architecture St. Louis San Francisco Woods Hole

28.

29.

30.

31. IA Book Viewer http://www.us.archive.org/GnuBook/?id=floramedicaodera118diet#229

32.

33.

34. Articles

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47. Outreach

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50. If BHL-E is not a Research Project…

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BHL Tech Overview for BHL-Europe

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