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Genetic engineering of E.coli for heavy 
metal sequestration 
By Jonlin Chen and Aaron Gittelman
The Team 
● Award-winning 
undergraduate project 
team 
● International Genetically 
Engineered Machine 
● “Biobricks” : Standardized 
genetic parts 
● Annual competition
Water Contamination 
● Heavy metals 
o Mercury, lead, nickel 
● Sources: 
o Industrial manufacturing 
o Hydraulic fracturing 
o Coal mining 
o Construction 
● Harmful to humans, ecosystem, aquatic life 
o Biomagnification
Project Goals 
● Engineer E.coli to uptake heavy metals from 
the environment 
● Integrate cells into a continuous water 
filtration system 
● Test efficacy of biological filter with lab 
based and local water samples
Heavy Metal Transport Proteins 
● Proteins specific to heavy metals 
o nixA - nickel 
o merT and merP - mercury 
o CBP4 - lead 
● Behind the constitutive Anderson promoter 
nixA 
Anderson 
Promoter
E.coli - Metal Transport 
E.coli 
Metal Ions 
Transport 
Protein
Metallothioneins 
● Low molecular weight proteins 
● High metal binding affinities 
o GST-YMT, GST-PMT 
● Expression causes cellular dormancy 
● Arabinose inducible system 
Arabinose 
araBAD Promoter 
Metallothionein 
T7 Promoter 
T7 Polymerase
Metallothionein Expression 
E.coli 
Metal Ions 
Transport 
Protein 
Metallothioneins
Saturation Sensing System 
● Insert mRFP gene behind metal-inducible 
promoters 
o Cells will fluoresce when metallothioneins are 
saturated 
● Metal sensitive promoters induced once MT 
are saturated 
mRFP 
Metal Inducible Promoter
Reporter System 
E.coli 
Metal 
Ions 
Transport 
Protein 
Metallothioneins 
Reporter Plasmid
Efficacy Analysis and Applications 
● Growth Assays 
● Fiber Reactor Filter Testing 
■ Lab made samples 
■ Local water supplies 
● Further applications 
○ Buoys 
○ Factory waste water treatment
Thank you for coming! 
● Special thanks to 
o Cornell University 
o College of Engineering 
o Wilson Lab 
o Dr. Shivaun Archer 
o Dr. Xiling Shen

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Cornell iGEM SILS 2014

  • 1. Genetic engineering of E.coli for heavy metal sequestration By Jonlin Chen and Aaron Gittelman
  • 2. The Team ● Award-winning undergraduate project team ● International Genetically Engineered Machine ● “Biobricks” : Standardized genetic parts ● Annual competition
  • 3. Water Contamination ● Heavy metals o Mercury, lead, nickel ● Sources: o Industrial manufacturing o Hydraulic fracturing o Coal mining o Construction ● Harmful to humans, ecosystem, aquatic life o Biomagnification
  • 4. Project Goals ● Engineer E.coli to uptake heavy metals from the environment ● Integrate cells into a continuous water filtration system ● Test efficacy of biological filter with lab based and local water samples
  • 5. Heavy Metal Transport Proteins ● Proteins specific to heavy metals o nixA - nickel o merT and merP - mercury o CBP4 - lead ● Behind the constitutive Anderson promoter nixA Anderson Promoter
  • 6. E.coli - Metal Transport E.coli Metal Ions Transport Protein
  • 7. Metallothioneins ● Low molecular weight proteins ● High metal binding affinities o GST-YMT, GST-PMT ● Expression causes cellular dormancy ● Arabinose inducible system Arabinose araBAD Promoter Metallothionein T7 Promoter T7 Polymerase
  • 8. Metallothionein Expression E.coli Metal Ions Transport Protein Metallothioneins
  • 9. Saturation Sensing System ● Insert mRFP gene behind metal-inducible promoters o Cells will fluoresce when metallothioneins are saturated ● Metal sensitive promoters induced once MT are saturated mRFP Metal Inducible Promoter
  • 10. Reporter System E.coli Metal Ions Transport Protein Metallothioneins Reporter Plasmid
  • 11. Efficacy Analysis and Applications ● Growth Assays ● Fiber Reactor Filter Testing ■ Lab made samples ■ Local water supplies ● Further applications ○ Buoys ○ Factory waste water treatment
  • 12. Thank you for coming! ● Special thanks to o Cornell University o College of Engineering o Wilson Lab o Dr. Shivaun Archer o Dr. Xiling Shen