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Linking Data, Linking People
2010 International Symposium on Agricultural Ontology Service
John Fereira, Cornell University
jaf30@cornell.edu
An RDF Graph
John Fereira
Cornell University
isAnEmployeeOf
• Subject: John Fereira
• Predicate: isAnEmployeeOf
• Object: Cornell University
What is an Ontology?
• an ontology defines a set of representational primitives
with which to model a domain of knowledge or
discourse.
http://en.wikipedia.org/wiki/Ontology_(information_science)
My Definition of an Ontology
• An Ontology is the language, or vocabulary used by
practitioners in a specific domain.
• Essentially it is a controlled vocabulary for a specific
subject area,
• Geographic Names Ontology defines terms for things
like:
• Park, Shelf, Saddle
• Terms might have different means if using a different
ontology
Sample RDF can describe members
<foaf:Organization>
<foaf:name>Cornell University</foaf:name>
<dc:type
rdf:about="http://projectrss.org/wiki/spec#Type_of_Organization">nonprofit<
/dc:type>
<foaf:member>
<foaf:Person>
<foaf:name>John Fereira</foaf:name>
</foaf:Person>
<foaf:Person>
<foaf:name>Aaron Godert</foaf:name>
</foaf:Person>
</foaf:member>
</foaf:Organization>
Code4Lib: Code For Libraries
<?xml version="1.0" encoding="UTF-8"?>
...
<Person rdf:about="http://www.code4lib.org/id/zoia">
<name>Zoia</name>
<nick>zoia</nick>
<depiction rdf:resource="http://rc98.net/img/zoia.jpg" />
<based_near rdf:parseType="Resource">
<geo:lat>40.7355556</geo:lat>
<geo:long>-74.1727778</geo:long>
</based_near>
<s:comment>This URI indentifies me the person. Feel free to use it when making statements
about me the person (such as "your_uri foaf:knows http://www.code4lib.org/id/zoia").</s:comment>
<knows>
<Person rdf:about="http://rc98.net/foaf#me">
<nick>gsf</nick>
</Person>
</knows>
<swc:attendeeAt rdf:resource="http://code4lib.org/2009#conference" />
<swc:attendeeAt rdf:resource="http://code4lib.org/node/266#linked-data-preconf" />
<interest rdf:resource="http://dbpedia.org/resource/Python_%28programming_language%29"/>
<interest rdf:resource="http://dbpedia.org/resource/Singing"/>
</Person>
</rdf:RDF>
Linked Data principles
Tim Berners-Lee:
• Use URIs as names for things
• Use HTTP URIs so that people can look up those
names using the web
• When someone looks up a URI, provide useful
information, using the standards (RDF, SPARQL)
• Include links to other URIs so that people can
discover more things
http://www.w3.org/DesignIssues/LinkedData.html
http://linkeddata.org
Vivo in the Open Data Cloud
Food security
Melbourne Central Research Data Registry
SKE Knowledge Environment
Biomedical and Health Knowledge Environment
Unique Identifier for Michael Conlon
• http://vivo.ufl.edu/individual/n25562
• http://vivo.ufl.edu/individual/Michael_Conlon would be
better
Requesting RDF using an Accept Header
• curl -H "Accept: application/rdf+xml" -X GET
http://vivo.ufl.edu/display/n25562
Querying Triples with SPARQL
• By individual URI (subject or object)
• Everything about one event, a grant, a person
• By property relationship (verb)
• All organizations that are part of another
• By type
• Everything with an rdf:type of Event, Person, or
Project
• By combinations of the above
• SPARQL leverages the RDF format to focus on the data
Enabling National Networking of Scientists
Vivoweb is open source
http://www.vivoweb.org
http://sourceforge.net/projects/vivo
cancer
Visualizing RDF as a map
Querying the CIARD ring with SPARQL
Ciard Ring SPARQL Query results
Thank You
Zie Zie
Linking Data, Linking People
A collection of links
Ontology defined on Wikipedia
http://en.wikipedia.org/wiki/Ontology_(information_scienc
e)
Example of FOAF
http://code.google.com/p/projectrss-spec/wiki/examples
About.me
http://about.me/
Semantic Web Conference Ontology
http://data.semanticweb.org/ns/swc/ontology
Code4Lib
http://www.code4lib.org
Code4Lib "Zoia"
http://code4lib.org/irc/faq
Linked Data Principals
http://www.w3.org/DesignIssues/LinkedData.html
Linked Data site
http://linkeddata.org
Cornell Vivo (classic Vivo)
http://vivo.library.cornell.edu
Melbourne Central Research Data Registry
http://vitrofe.esrc.unimelb.edu.au:8333/vitroANDS/i
ndex.jsp?primary=1
Subject Knowledge Environment
http://ske.las.ac.cn/
Vivo at University of Florida
http://vivo.ufl.edu/
Semantic Web Services app
http://turner.mannlib.cornell.edu:8080/SemanticSer
vices/showMainMenu.do
Cornell Classics Department site
http://classics.cornell.edu/people/faculty.cfm
Vivoweb
http://vivoweb.org
Vivoweb on Sourceforge
http://www.sourceforge.net/projects/vivo

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Linking Data, Linking People

  • 1. Linking Data, Linking People 2010 International Symposium on Agricultural Ontology Service John Fereira, Cornell University jaf30@cornell.edu
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  • 3. An RDF Graph John Fereira Cornell University isAnEmployeeOf • Subject: John Fereira • Predicate: isAnEmployeeOf • Object: Cornell University
  • 4. What is an Ontology? • an ontology defines a set of representational primitives with which to model a domain of knowledge or discourse. http://en.wikipedia.org/wiki/Ontology_(information_science)
  • 5. My Definition of an Ontology • An Ontology is the language, or vocabulary used by practitioners in a specific domain. • Essentially it is a controlled vocabulary for a specific subject area, • Geographic Names Ontology defines terms for things like: • Park, Shelf, Saddle • Terms might have different means if using a different ontology
  • 6. Sample RDF can describe members <foaf:Organization> <foaf:name>Cornell University</foaf:name> <dc:type rdf:about="http://projectrss.org/wiki/spec#Type_of_Organization">nonprofit< /dc:type> <foaf:member> <foaf:Person> <foaf:name>John Fereira</foaf:name> </foaf:Person> <foaf:Person> <foaf:name>Aaron Godert</foaf:name> </foaf:Person> </foaf:member> </foaf:Organization>
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  • 10. Code4Lib: Code For Libraries
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  • 12. <?xml version="1.0" encoding="UTF-8"?> ... <Person rdf:about="http://www.code4lib.org/id/zoia"> <name>Zoia</name> <nick>zoia</nick> <depiction rdf:resource="http://rc98.net/img/zoia.jpg" /> <based_near rdf:parseType="Resource"> <geo:lat>40.7355556</geo:lat> <geo:long>-74.1727778</geo:long> </based_near> <s:comment>This URI indentifies me the person. Feel free to use it when making statements about me the person (such as "your_uri foaf:knows http://www.code4lib.org/id/zoia").</s:comment> <knows> <Person rdf:about="http://rc98.net/foaf#me"> <nick>gsf</nick> </Person> </knows> <swc:attendeeAt rdf:resource="http://code4lib.org/2009#conference" /> <swc:attendeeAt rdf:resource="http://code4lib.org/node/266#linked-data-preconf" /> <interest rdf:resource="http://dbpedia.org/resource/Python_%28programming_language%29"/> <interest rdf:resource="http://dbpedia.org/resource/Singing"/> </Person> </rdf:RDF>
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  • 14. Linked Data principles Tim Berners-Lee: • Use URIs as names for things • Use HTTP URIs so that people can look up those names using the web • When someone looks up a URI, provide useful information, using the standards (RDF, SPARQL) • Include links to other URIs so that people can discover more things http://www.w3.org/DesignIssues/LinkedData.html http://linkeddata.org
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  • 16. Vivo in the Open Data Cloud
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  • 22. Melbourne Central Research Data Registry
  • 24. Biomedical and Health Knowledge Environment
  • 25. Unique Identifier for Michael Conlon • http://vivo.ufl.edu/individual/n25562 • http://vivo.ufl.edu/individual/Michael_Conlon would be better
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  • 27. Requesting RDF using an Accept Header • curl -H "Accept: application/rdf+xml" -X GET http://vivo.ufl.edu/display/n25562
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  • 29. Querying Triples with SPARQL • By individual URI (subject or object) • Everything about one event, a grant, a person • By property relationship (verb) • All organizations that are part of another • By type • Everything with an rdf:type of Event, Person, or Project • By combinations of the above • SPARQL leverages the RDF format to focus on the data
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  • 33. Vivoweb is open source http://www.vivoweb.org http://sourceforge.net/projects/vivo
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  • 38. Querying the CIARD ring with SPARQL
  • 39. Ciard Ring SPARQL Query results
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  • 42. Linking Data, Linking People A collection of links Ontology defined on Wikipedia http://en.wikipedia.org/wiki/Ontology_(information_scienc e) Example of FOAF http://code.google.com/p/projectrss-spec/wiki/examples About.me http://about.me/ Semantic Web Conference Ontology http://data.semanticweb.org/ns/swc/ontology Code4Lib http://www.code4lib.org Code4Lib "Zoia" http://code4lib.org/irc/faq Linked Data Principals http://www.w3.org/DesignIssues/LinkedData.html Linked Data site http://linkeddata.org Cornell Vivo (classic Vivo) http://vivo.library.cornell.edu Melbourne Central Research Data Registry http://vitrofe.esrc.unimelb.edu.au:8333/vitroANDS/i ndex.jsp?primary=1 Subject Knowledge Environment http://ske.las.ac.cn/ Vivo at University of Florida http://vivo.ufl.edu/ Semantic Web Services app http://turner.mannlib.cornell.edu:8080/SemanticSer vices/showMainMenu.do Cornell Classics Department site http://classics.cornell.edu/people/faculty.cfm Vivoweb http://vivoweb.org Vivoweb on Sourceforge http://www.sourceforge.net/projects/vivo