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Facilitating Standardization and Exchange of Array Design  ADF MAGE-ML Tool Pierre Marguerite – Friday Seminar EBI – Microarray Informatics Team 15 October 2004
ADF MAGE-ML Tool ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
conversion tool
MAGE-ML (MAGE-OM) Description Biosequence Array Array Design DesignElement DesignElement
MAGE-ML (next)
ADF (previous)
Array Design File adh adr adc Header contacts Technical Information
Array Design File adr adc Reporters Features Feature  /Reporter
Array Design File Composite Characteristics Map to reporters
ADF version differences ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object]
Validation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Validation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Checking lists (header) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Checking lists  (feature reporter) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Checking lists  (composite) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Checking lists ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
 
MGED Ontology / DAML+OIL
Approved Databases
User  modes
Implementation -  technical  choices ,[object Object],[object Object],[object Object],Performance: 4000 features : ~10 minutes
Installer - izpack http://www.izforge.com/izpack/
http://www.ebi.ac.uk/adf http://www.ebi.ac.uk/adf/
 

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Friday Seminar 15 10 2004

Notes de l'éditeur

  1. Vocabulaire contrôlé
  2. 16 packages au total 6 pour design
  3. Redondance des informations Plus claire et plus lisible Facilement créable (tableur)
  4. Facile a lire et a comprenddre créer ->redondance d’information
  5. Facile a lire et a comprenddre créer ->redondance d’information
  6. Relaxed : allowing the usual mistakes (if they can be identified as well). Strict : file must exactly match the specification. A complete mode , which checks whole data; In that case, the process will not stop if an error is identified. A step-by-step mode : once an error is found, the process will stop, allowing a correction of errors one by one (for small data set or known small error numbers);