SlideShare une entreprise Scribd logo
1  sur  11
Télécharger pour lire hors ligne
Project Astounding Confocal Fred Martin BIOSC. 3  Dr. Giorgi 5/10/2010
Z-Stack Metadata: Specimen used :  Invitrogen Side #6 Muntjac Cells (part#F36925) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],* Source: Invitrogen website Sections 19  Line-Accumulation 1  Zoom 1.7  Format-Height 512  pixels  Voxel-Height 446.1  nm  Format-Width 512  pixels  Voxel-Width 446.1  nm  Channels 3  StepSize 0.50  µm  Resolution 8  bits  Size-Depth -9.0 µm  Line-Average 1  Size-Height 227.9  µm  Frame-Average 1  Size-Width 227.9  µm  Frame-Accumulation 1  Pinhole [airy] 1.00  SequentialMode 0  Pinhole [m] 67.9  µm  981.2  PMT 3 (HV) 648.9  PMT 2 (HV) 505.8  PMT 1 (HV) -0.3  % PMT 3 (Offs.) -0.2  % PMT 2 (Offs.) -0.1  % PMT 1 (Offs.)
Frame 001 Frame 004 Frame 007  Frame 010 Frame 013 Frame 016  Z-stack: total 19 slices showing every 3 rd  slice (StepSize 0.50  µm)
Max projection of 3  channel, 19 slice z- stack Format- 512x512 StepSize 0.50  µm Zoom 1.7 Pinhole 67.9  µm   PMT 1 (Offs.) -0.1  % -0.2  % -0.3  % PMT 2 (Offs.) PMT 3 (Offs.) PMT 1 (gain) 505.8 648.9  981.2  PMT 2 (gain) PMT 3 (gain)
Orthoview of 3  channel, 19 slice z- stack
Frame 1 @ 0.33sec   Frame 2 @ 0.67sec   Frame 3 @ 1.00sec   Frame 4 @ 1.33sec   Frame 5 @ 1.67sec   Frame 6 @ 2.00sec   Frame 7 @ 2.33sec   Frame 8 @ 2.67sec   Frame 9 @ 3.00sec   Frame 10 @ 3.33sec   Frame |  1  |  2  |  3  |  4  |  5  |  6 |  7  |  8  |  9 |  10  |  Lambda Scan from 550-610nm: Image Series above correlate to each wavelength/intensity reading in chart/graph to right Structure is fibroblast actin  labeled with Alexa Fluor 488: weaker, post-peak EM signal
Mark and Find Function: 3 random x,y,z coordinates identified & recaptured later Top row series: manual images before defining xyz positions with “Mark” function Bottom row series: Auto images captured with “Find” function by recalled xyz positions
Two frames from Movie of 3D volume rendering of z-stack: rotating at -45deg y axis viewing angle Image 1: Frame 9 of 20  @ 2.5 sec of 5.0 sec  Image 2: Frame 20 of 20  @ 5.0 sec of 5.0 sec
Movie of 3D volume rendering of z-stack, rotating at - 45deg. y axis viewing angle
Original Separation 1 Separation   2 Dye Separation Series:  3 channels, Auto- separate,  weak  strength Original
Muntjac fibroblast slide display signal in all 3 channels at 40x oil, test image (unmounted slide to reboot & subsequently could not locate this area of slide: all nuclei were bleached elsewhere

Contenu connexe

Similaire à Project SP5

Pulsar Thermion 2 Reticle Catalogue | Optics Trade
Pulsar Thermion 2 Reticle Catalogue | Optics TradePulsar Thermion 2 Reticle Catalogue | Optics Trade
Pulsar Thermion 2 Reticle Catalogue | Optics TradeOptics-Trade
 
Reticle Catalog | Pulsar Trail 2 LRF | Optics Trade
Reticle Catalog | Pulsar Trail 2 LRF | Optics TradeReticle Catalog | Pulsar Trail 2 LRF | Optics Trade
Reticle Catalog | Pulsar Trail 2 LRF | Optics TradeOptics-Trade
 
AnNguyen_MSThesis
AnNguyen_MSThesisAnNguyen_MSThesis
AnNguyen_MSThesisAn Nguyen
 
PSNR based Optimization using statistical algorithm.ppsx
PSNR based Optimization using statistical algorithm.ppsxPSNR based Optimization using statistical algorithm.ppsx
PSNR based Optimization using statistical algorithm.ppsxBharathi Lakshmi Pon
 
2019 CtD: A hybrid deep learning approach to vertexing
2019 CtD: A hybrid deep learning approach to vertexing2019 CtD: A hybrid deep learning approach to vertexing
2019 CtD: A hybrid deep learning approach to vertexingHenry Schreiner
 
Fully 3D-Integrated Pixel Detectors for X-Rays
Fully 3D-Integrated Pixel Detectors for X-RaysFully 3D-Integrated Pixel Detectors for X-Rays
Fully 3D-Integrated Pixel Detectors for X-RaysSunnySagar10
 
Comparative Study and Designing of Different Radiating Patch in Microstrip Pa...
Comparative Study and Designing of Different Radiating Patch in Microstrip Pa...Comparative Study and Designing of Different Radiating Patch in Microstrip Pa...
Comparative Study and Designing of Different Radiating Patch in Microstrip Pa...ijsrd.com
 
Convolutional Neural Network
Convolutional Neural NetworkConvolutional Neural Network
Convolutional Neural NetworkJun Young Park
 
Dienhathe.com catalogue epcos-capacitor_phicap_b32344d
Dienhathe.com catalogue epcos-capacitor_phicap_b32344dDienhathe.com catalogue epcos-capacitor_phicap_b32344d
Dienhathe.com catalogue epcos-capacitor_phicap_b32344dDien Ha The
 
OptoProbes PPT
OptoProbes PPTOptoProbes PPT
OptoProbes PPTEran Segev
 
IRJET - Design and Performance Analysis of Linear Array
IRJET -  	  Design and Performance Analysis of Linear ArrayIRJET -  	  Design and Performance Analysis of Linear Array
IRJET - Design and Performance Analysis of Linear ArrayIRJET Journal
 
Focal Plane Array optical sectioning
Focal Plane Array optical sectioningFocal Plane Array optical sectioning
Focal Plane Array optical sectioningDr. Pranav Rathi
 

Similaire à Project SP5 (20)

Pulsar Thermion 2 Reticle Catalogue | Optics Trade
Pulsar Thermion 2 Reticle Catalogue | Optics TradePulsar Thermion 2 Reticle Catalogue | Optics Trade
Pulsar Thermion 2 Reticle Catalogue | Optics Trade
 
Reticle Catalog | Pulsar Trail 2 LRF | Optics Trade
Reticle Catalog | Pulsar Trail 2 LRF | Optics TradeReticle Catalog | Pulsar Trail 2 LRF | Optics Trade
Reticle Catalog | Pulsar Trail 2 LRF | Optics Trade
 
AnNguyen_MSThesis
AnNguyen_MSThesisAnNguyen_MSThesis
AnNguyen_MSThesis
 
MAPEM.ppsx
MAPEM.ppsxMAPEM.ppsx
MAPEM.ppsx
 
PSNR based Optimization using statistical algorithm.ppsx
PSNR based Optimization using statistical algorithm.ppsxPSNR based Optimization using statistical algorithm.ppsx
PSNR based Optimization using statistical algorithm.ppsx
 
2019 CtD: A hybrid deep learning approach to vertexing
2019 CtD: A hybrid deep learning approach to vertexing2019 CtD: A hybrid deep learning approach to vertexing
2019 CtD: A hybrid deep learning approach to vertexing
 
Fully 3D-Integrated Pixel Detectors for X-Rays
Fully 3D-Integrated Pixel Detectors for X-RaysFully 3D-Integrated Pixel Detectors for X-Rays
Fully 3D-Integrated Pixel Detectors for X-Rays
 
Final project report
Final project reportFinal project report
Final project report
 
Spdas1 vlsibput
Spdas1 vlsibputSpdas1 vlsibput
Spdas1 vlsibput
 
Comparative Study and Designing of Different Radiating Patch in Microstrip Pa...
Comparative Study and Designing of Different Radiating Patch in Microstrip Pa...Comparative Study and Designing of Different Radiating Patch in Microstrip Pa...
Comparative Study and Designing of Different Radiating Patch in Microstrip Pa...
 
Slub yarn
Slub yarnSlub yarn
Slub yarn
 
Convolutional Neural Network
Convolutional Neural NetworkConvolutional Neural Network
Convolutional Neural Network
 
5th Semester (June; July-2015) Civil Engineering Question Paper
5th Semester (June; July-2015) Civil Engineering Question Paper5th Semester (June; July-2015) Civil Engineering Question Paper
5th Semester (June; July-2015) Civil Engineering Question Paper
 
Dienhathe.com catalogue epcos-capacitor_phicap_b32344d
Dienhathe.com catalogue epcos-capacitor_phicap_b32344dDienhathe.com catalogue epcos-capacitor_phicap_b32344d
Dienhathe.com catalogue epcos-capacitor_phicap_b32344d
 
Ci33514517
Ci33514517Ci33514517
Ci33514517
 
Ci33514517
Ci33514517Ci33514517
Ci33514517
 
Ci33514517
Ci33514517Ci33514517
Ci33514517
 
OptoProbes PPT
OptoProbes PPTOptoProbes PPT
OptoProbes PPT
 
IRJET - Design and Performance Analysis of Linear Array
IRJET -  	  Design and Performance Analysis of Linear ArrayIRJET -  	  Design and Performance Analysis of Linear Array
IRJET - Design and Performance Analysis of Linear Array
 
Focal Plane Array optical sectioning
Focal Plane Array optical sectioningFocal Plane Array optical sectioning
Focal Plane Array optical sectioning
 

Plus de F M

Fred martinpsf
Fred martinpsfFred martinpsf
Fred martinpsfF M
 
Project PSF
Project PSFProject PSF
Project PSFF M
 
Nikon Motorized Microscope
Nikon Motorized MicroscopeNikon Motorized Microscope
Nikon Motorized MicroscopeF M
 
Fred Martin Micrograph Portfolio
Fred Martin Micrograph PortfolioFred Martin Micrograph Portfolio
Fred Martin Micrograph PortfolioF M
 
Project PreFab Fluoresence
Project PreFab FluoresenceProject PreFab Fluoresence
Project PreFab FluoresenceF M
 
Fred Martin Cv R
Fred Martin Cv RFred Martin Cv R
Fred Martin Cv RF M
 

Plus de F M (6)

Fred martinpsf
Fred martinpsfFred martinpsf
Fred martinpsf
 
Project PSF
Project PSFProject PSF
Project PSF
 
Nikon Motorized Microscope
Nikon Motorized MicroscopeNikon Motorized Microscope
Nikon Motorized Microscope
 
Fred Martin Micrograph Portfolio
Fred Martin Micrograph PortfolioFred Martin Micrograph Portfolio
Fred Martin Micrograph Portfolio
 
Project PreFab Fluoresence
Project PreFab FluoresenceProject PreFab Fluoresence
Project PreFab Fluoresence
 
Fred Martin Cv R
Fred Martin Cv RFred Martin Cv R
Fred Martin Cv R
 

Dernier

Zeshan Sattar- Assessing the skill requirements and industry expectations for...
Zeshan Sattar- Assessing the skill requirements and industry expectations for...Zeshan Sattar- Assessing the skill requirements and industry expectations for...
Zeshan Sattar- Assessing the skill requirements and industry expectations for...itnewsafrica
 
Decarbonising Buildings: Making a net-zero built environment a reality
Decarbonising Buildings: Making a net-zero built environment a realityDecarbonising Buildings: Making a net-zero built environment a reality
Decarbonising Buildings: Making a net-zero built environment a realityIES VE
 
Email Marketing Automation for Bonterra Impact Management (fka Social Solutio...
Email Marketing Automation for Bonterra Impact Management (fka Social Solutio...Email Marketing Automation for Bonterra Impact Management (fka Social Solutio...
Email Marketing Automation for Bonterra Impact Management (fka Social Solutio...Jeffrey Haguewood
 
A Glance At The Java Performance Toolbox
A Glance At The Java Performance ToolboxA Glance At The Java Performance Toolbox
A Glance At The Java Performance ToolboxAna-Maria Mihalceanu
 
Accelerating Enterprise Software Engineering with Platformless
Accelerating Enterprise Software Engineering with PlatformlessAccelerating Enterprise Software Engineering with Platformless
Accelerating Enterprise Software Engineering with PlatformlessWSO2
 
So einfach geht modernes Roaming fuer Notes und Nomad.pdf
So einfach geht modernes Roaming fuer Notes und Nomad.pdfSo einfach geht modernes Roaming fuer Notes und Nomad.pdf
So einfach geht modernes Roaming fuer Notes und Nomad.pdfpanagenda
 
Top 10 Hubspot Development Companies in 2024
Top 10 Hubspot Development Companies in 2024Top 10 Hubspot Development Companies in 2024
Top 10 Hubspot Development Companies in 2024TopCSSGallery
 
Microsoft 365 Copilot: How to boost your productivity with AI – Part two: Dat...
Microsoft 365 Copilot: How to boost your productivity with AI – Part two: Dat...Microsoft 365 Copilot: How to boost your productivity with AI – Part two: Dat...
Microsoft 365 Copilot: How to boost your productivity with AI – Part two: Dat...Nikki Chapple
 
QCon London: Mastering long-running processes in modern architectures
QCon London: Mastering long-running processes in modern architecturesQCon London: Mastering long-running processes in modern architectures
QCon London: Mastering long-running processes in modern architecturesBernd Ruecker
 
How to Effectively Monitor SD-WAN and SASE Environments with ThousandEyes
How to Effectively Monitor SD-WAN and SASE Environments with ThousandEyesHow to Effectively Monitor SD-WAN and SASE Environments with ThousandEyes
How to Effectively Monitor SD-WAN and SASE Environments with ThousandEyesThousandEyes
 
Infrared simulation and processing on Nvidia platforms
Infrared simulation and processing on Nvidia platformsInfrared simulation and processing on Nvidia platforms
Infrared simulation and processing on Nvidia platformsYoss Cohen
 
Time Series Foundation Models - current state and future directions
Time Series Foundation Models - current state and future directionsTime Series Foundation Models - current state and future directions
Time Series Foundation Models - current state and future directionsNathaniel Shimoni
 
Glenn Lazarus- Why Your Observability Strategy Needs Security Observability
Glenn Lazarus- Why Your Observability Strategy Needs Security ObservabilityGlenn Lazarus- Why Your Observability Strategy Needs Security Observability
Glenn Lazarus- Why Your Observability Strategy Needs Security Observabilityitnewsafrica
 
Landscape Catalogue 2024 Australia-1.pdf
Landscape Catalogue 2024 Australia-1.pdfLandscape Catalogue 2024 Australia-1.pdf
Landscape Catalogue 2024 Australia-1.pdfAarwolf Industries LLC
 
Connecting the Dots for Information Discovery.pdf
Connecting the Dots for Information Discovery.pdfConnecting the Dots for Information Discovery.pdf
Connecting the Dots for Information Discovery.pdfNeo4j
 
JET Technology Labs White Paper for Virtualized Security and Encryption Techn...
JET Technology Labs White Paper for Virtualized Security and Encryption Techn...JET Technology Labs White Paper for Virtualized Security and Encryption Techn...
JET Technology Labs White Paper for Virtualized Security and Encryption Techn...amber724300
 
Long journey of Ruby standard library at RubyConf AU 2024
Long journey of Ruby standard library at RubyConf AU 2024Long journey of Ruby standard library at RubyConf AU 2024
Long journey of Ruby standard library at RubyConf AU 2024Hiroshi SHIBATA
 
A Journey Into the Emotions of Software Developers
A Journey Into the Emotions of Software DevelopersA Journey Into the Emotions of Software Developers
A Journey Into the Emotions of Software DevelopersNicole Novielli
 
The Future Roadmap for the Composable Data Stack - Wes McKinney - Data Counci...
The Future Roadmap for the Composable Data Stack - Wes McKinney - Data Counci...The Future Roadmap for the Composable Data Stack - Wes McKinney - Data Counci...
The Future Roadmap for the Composable Data Stack - Wes McKinney - Data Counci...Wes McKinney
 
Transcript: New from BookNet Canada for 2024: BNC SalesData and LibraryData -...
Transcript: New from BookNet Canada for 2024: BNC SalesData and LibraryData -...Transcript: New from BookNet Canada for 2024: BNC SalesData and LibraryData -...
Transcript: New from BookNet Canada for 2024: BNC SalesData and LibraryData -...BookNet Canada
 

Dernier (20)

Zeshan Sattar- Assessing the skill requirements and industry expectations for...
Zeshan Sattar- Assessing the skill requirements and industry expectations for...Zeshan Sattar- Assessing the skill requirements and industry expectations for...
Zeshan Sattar- Assessing the skill requirements and industry expectations for...
 
Decarbonising Buildings: Making a net-zero built environment a reality
Decarbonising Buildings: Making a net-zero built environment a realityDecarbonising Buildings: Making a net-zero built environment a reality
Decarbonising Buildings: Making a net-zero built environment a reality
 
Email Marketing Automation for Bonterra Impact Management (fka Social Solutio...
Email Marketing Automation for Bonterra Impact Management (fka Social Solutio...Email Marketing Automation for Bonterra Impact Management (fka Social Solutio...
Email Marketing Automation for Bonterra Impact Management (fka Social Solutio...
 
A Glance At The Java Performance Toolbox
A Glance At The Java Performance ToolboxA Glance At The Java Performance Toolbox
A Glance At The Java Performance Toolbox
 
Accelerating Enterprise Software Engineering with Platformless
Accelerating Enterprise Software Engineering with PlatformlessAccelerating Enterprise Software Engineering with Platformless
Accelerating Enterprise Software Engineering with Platformless
 
So einfach geht modernes Roaming fuer Notes und Nomad.pdf
So einfach geht modernes Roaming fuer Notes und Nomad.pdfSo einfach geht modernes Roaming fuer Notes und Nomad.pdf
So einfach geht modernes Roaming fuer Notes und Nomad.pdf
 
Top 10 Hubspot Development Companies in 2024
Top 10 Hubspot Development Companies in 2024Top 10 Hubspot Development Companies in 2024
Top 10 Hubspot Development Companies in 2024
 
Microsoft 365 Copilot: How to boost your productivity with AI – Part two: Dat...
Microsoft 365 Copilot: How to boost your productivity with AI – Part two: Dat...Microsoft 365 Copilot: How to boost your productivity with AI – Part two: Dat...
Microsoft 365 Copilot: How to boost your productivity with AI – Part two: Dat...
 
QCon London: Mastering long-running processes in modern architectures
QCon London: Mastering long-running processes in modern architecturesQCon London: Mastering long-running processes in modern architectures
QCon London: Mastering long-running processes in modern architectures
 
How to Effectively Monitor SD-WAN and SASE Environments with ThousandEyes
How to Effectively Monitor SD-WAN and SASE Environments with ThousandEyesHow to Effectively Monitor SD-WAN and SASE Environments with ThousandEyes
How to Effectively Monitor SD-WAN and SASE Environments with ThousandEyes
 
Infrared simulation and processing on Nvidia platforms
Infrared simulation and processing on Nvidia platformsInfrared simulation and processing on Nvidia platforms
Infrared simulation and processing on Nvidia platforms
 
Time Series Foundation Models - current state and future directions
Time Series Foundation Models - current state and future directionsTime Series Foundation Models - current state and future directions
Time Series Foundation Models - current state and future directions
 
Glenn Lazarus- Why Your Observability Strategy Needs Security Observability
Glenn Lazarus- Why Your Observability Strategy Needs Security ObservabilityGlenn Lazarus- Why Your Observability Strategy Needs Security Observability
Glenn Lazarus- Why Your Observability Strategy Needs Security Observability
 
Landscape Catalogue 2024 Australia-1.pdf
Landscape Catalogue 2024 Australia-1.pdfLandscape Catalogue 2024 Australia-1.pdf
Landscape Catalogue 2024 Australia-1.pdf
 
Connecting the Dots for Information Discovery.pdf
Connecting the Dots for Information Discovery.pdfConnecting the Dots for Information Discovery.pdf
Connecting the Dots for Information Discovery.pdf
 
JET Technology Labs White Paper for Virtualized Security and Encryption Techn...
JET Technology Labs White Paper for Virtualized Security and Encryption Techn...JET Technology Labs White Paper for Virtualized Security and Encryption Techn...
JET Technology Labs White Paper for Virtualized Security and Encryption Techn...
 
Long journey of Ruby standard library at RubyConf AU 2024
Long journey of Ruby standard library at RubyConf AU 2024Long journey of Ruby standard library at RubyConf AU 2024
Long journey of Ruby standard library at RubyConf AU 2024
 
A Journey Into the Emotions of Software Developers
A Journey Into the Emotions of Software DevelopersA Journey Into the Emotions of Software Developers
A Journey Into the Emotions of Software Developers
 
The Future Roadmap for the Composable Data Stack - Wes McKinney - Data Counci...
The Future Roadmap for the Composable Data Stack - Wes McKinney - Data Counci...The Future Roadmap for the Composable Data Stack - Wes McKinney - Data Counci...
The Future Roadmap for the Composable Data Stack - Wes McKinney - Data Counci...
 
Transcript: New from BookNet Canada for 2024: BNC SalesData and LibraryData -...
Transcript: New from BookNet Canada for 2024: BNC SalesData and LibraryData -...Transcript: New from BookNet Canada for 2024: BNC SalesData and LibraryData -...
Transcript: New from BookNet Canada for 2024: BNC SalesData and LibraryData -...
 

Project SP5

  • 1. Project Astounding Confocal Fred Martin BIOSC. 3 Dr. Giorgi 5/10/2010
  • 2.
  • 3. Frame 001 Frame 004 Frame 007 Frame 010 Frame 013 Frame 016 Z-stack: total 19 slices showing every 3 rd slice (StepSize 0.50 µm)
  • 4. Max projection of 3 channel, 19 slice z- stack Format- 512x512 StepSize 0.50 µm Zoom 1.7 Pinhole 67.9 µm PMT 1 (Offs.) -0.1  % -0.2  % -0.3  % PMT 2 (Offs.) PMT 3 (Offs.) PMT 1 (gain) 505.8 648.9  981.2  PMT 2 (gain) PMT 3 (gain)
  • 5. Orthoview of 3 channel, 19 slice z- stack
  • 6. Frame 1 @ 0.33sec Frame 2 @ 0.67sec Frame 3 @ 1.00sec Frame 4 @ 1.33sec Frame 5 @ 1.67sec Frame 6 @ 2.00sec Frame 7 @ 2.33sec Frame 8 @ 2.67sec Frame 9 @ 3.00sec Frame 10 @ 3.33sec Frame | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | Lambda Scan from 550-610nm: Image Series above correlate to each wavelength/intensity reading in chart/graph to right Structure is fibroblast actin labeled with Alexa Fluor 488: weaker, post-peak EM signal
  • 7. Mark and Find Function: 3 random x,y,z coordinates identified & recaptured later Top row series: manual images before defining xyz positions with “Mark” function Bottom row series: Auto images captured with “Find” function by recalled xyz positions
  • 8. Two frames from Movie of 3D volume rendering of z-stack: rotating at -45deg y axis viewing angle Image 1: Frame 9 of 20 @ 2.5 sec of 5.0 sec Image 2: Frame 20 of 20 @ 5.0 sec of 5.0 sec
  • 9. Movie of 3D volume rendering of z-stack, rotating at - 45deg. y axis viewing angle
  • 10. Original Separation 1 Separation 2 Dye Separation Series: 3 channels, Auto- separate, weak strength Original
  • 11. Muntjac fibroblast slide display signal in all 3 channels at 40x oil, test image (unmounted slide to reboot & subsequently could not locate this area of slide: all nuclei were bleached elsewhere