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BITS: Introduction to Linux - Software installation the graphical and the command-line way

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This slide is part of the BITS training session: "Introduction to linux for life sciences." See http://www.bits.vib.be/index.php?option=com_content&view=article&id=17203890%3Abioperl-additional-material&catid=84&Itemid=284

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Dive into Linux ,[object Object],[object Object],BITS/VIB Bioinformatics Training – Oct 3, 2011 – Version 2 Joachim Jacob < [email_address] >; version 1 Luc Ducazu <luc@daphnia.com>
Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object]
Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Software ,[object Object],[object Object],[object Object],[object Object],[object Object]
Software installation the graphical way ,[object Object]
Software installation
Software installation
Software installation
Dependencies ,[object Object],[object Object],[object Object]
Software installation
Multi-user aspects ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Software installation
Software installation
Test run press <win+space> and start typing “Fir”
Where to find software? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Important: 32 bit vs. 64 bit
Where does the software manager finds its packages? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Enabling repositories
Enabling repositories
Exercise ,[object Object],[object Object],Choose 32 bit
Solution ,[object Object],preferred
Solution
Solution
Fastx is a command-line tool So we will dive into the shell!
First and foremost...
Shell ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
 
You never walk alone ,[object Object],[object Object],[object Object]
Man ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Exercise ,[object Object],[object Object],[object Object],[object Object]
Some solution ,[object Object],[object Object],[object Object],[object Object],apropos calendar cal (1) - displays a calendar and the date of Easter calendar (1) - reminder service Date::Calc (3pm) - Gregorian calendar date calculations Date::Calendar (3pm) - Calendar objects for different holiday schemes Date::Calendar::Profiles (3pm) - Some sample profiles for Date::Calendar and Date::Calendar::Year Date::Calendar::Year (3pm) - Implements embedded &quot;year&quot; objects for Date::Calendar Ncal (1) - displays a calendar and the date of Easter
Getting formal about commands ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Commands ,[object Object],[object Object],[object Object],[object Object]
Commands ,[object Object],[object Object],[object Object],[object Object],[object Object]
Short options ,[object Object],[object Object],[object Object]
Long options ,[object Object],[object Object]
Arguments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Arguments ,[object Object],[object Object]
More about ls ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Long List ,[object Object],[object Object],[object Object],[object Object]
Permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
File permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Executable files ,[object Object],[object Object],[object Object]
Executable files ,[object Object]
Directory permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Wildcards ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Hidden files ,[object Object],[object Object]
Exercises ,[object Object],[object Object],[object Object],[object Object]
Solutions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Command history ,[object Object],[object Object],[object Object]
Command history ,[object Object],[object Object]
Tab expansion ,[object Object],[object Object],[object Object],[object Object],[object Object]
Switch User ,[object Object],[object Object],[object Object],[object Object]
Switch User ,[object Object],[object Object]
Switch User ,[object Object],[object Object],[object Object]
Switch User ,[object Object]
Yum ,[object Object],[object Object],[object Object],[object Object],[object Object]
Yum repositories ,[object Object],[object Object]
Yum repositories ,[object Object],[object Object],[object Object],[object Object]
Yum - examples ,[object Object],[object Object],[object Object],[object Object],[object Object]
Yum - examples ,[object Object],[object Object],[object Object],[object Object]
Yum - examples ,[object Object],[object Object],[object Object]
Exercise ,[object Object],[object Object],[object Object],[object Object]
Solutions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Solutions ,[object Object],[object Object],[object Object],[object Object]
Solution ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Linux ,[object Object]

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