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ADAPTIVE
                       IMMUNITY


Monday, July 9, 2012
IMPORTANT
                         POINTS

      • What is Adaptive Immune Response?
      • What is the difference between T and B cell function
              for adaptive immune response?
      • What are Antigen-Presenting Cells (APCs)?
      • What is the role of MHC in adaptive response?
Monday, July 9, 2012
ADAPTIVE IMMUNE
                          RESPONSE
       •      initiated when antigen receptors of lymphocytes recognize the antigens

       •      B lymphocytes receptors (membrane-bound-antibodies): proteins,
              polysaccharides, lipids, nucleic acids, small chemicals in soluble or cell surface-
              associated form

                   •   humoral

                   •   generated against many types of microbial cell walls and soluble antigens

       •      T lymphocytes receptors: peptide fragments of protein antigens

                   •   presented by specialized display molecules on host cells

                   •   cell-mediated

                   •   generated only against the protein antigens of microbes that are
                       associated with host cells
Monday, July 9, 2012
BARRIERS TO THE
                       INDUCTION OF ADAPTIVE
                          IMMUNE RESPONSE
     • low frequency of naive lymphocytes in the body
             specific for any one antigen (may be less than 1 in
             every 100,000) which has to LOCATE and REACT
             rapidly to the antigen wherever it is introduced
     • different kinds of microbes need to be combated by
             different types of adaptive response (even to the same
             microbe at different stages of its life)
                 • e.g. virus (blood stages = antibodies; host cell
                       stages = CTLs)
Monday, July 9, 2012
ANTIGEN
                        CAPTURE &
                       PRESENTATION


Monday, July 9, 2012
ANTIGEN RECOGNITION
                   BY T LYMPHOCYTES
       • The majority of T lymphocytes recognize
               peptide antigens that are bound to and displayed
               by the major histocompatibility complex (MHC)
               molecules of antigen-presenting cells (APCs).	


       • MHC: genetic locus whose principal products
               function as the peptide display molecules of the
               immune system

       • MHC restriction: unique for each individual;
               different clones of T cells can see peptides only
               when these peptides are displayed by that
               individual's MHC molecules
Monday, July 9, 2012
ANTIGEN RECOGNITION
                   BY T LYMPHOCYTES
     • DUAL SPECIFICITY
             OF T-CELLS:

           • T cell receptor (TCR)
                   recognizes some
                   residues of peptide
                   antigen

           • T cell receptor (TCR)
                   recognizes residues
                   of the MHC molecule
                   that is displaying
                   that peptide
Monday, July 9, 2012
ANTIGEN-PRESENTING
                     CELLS (APCs)
       •       specialized cells that capture microbial antigens and display
               them for recognition by T lymphocytes

       •       “professional” APCs: ability to both display antigens for T
               cells and provide the additional signals needed to activate
               naive T cells

       •       Differentiated effector T cells again need to see antigens
               presented by various APCs, to activate the effector
               functions of the T cells in humoral and cell-mediated
               immune responses.

                   •   How does APCs present antigens to trigger immune
                       responses?

                   •   What is the role of MHC molecules in these processes?

Monday, July 9, 2012
CAPTURE OF PROTEIN
                        ANTIGENS BY APCs
     •       Protein antigens of microbes
             that enter the body are
             captured by professional APCs
             and are concentrated in the
             peripheral lymphoid organs
             where immune are initiated




Monday, July 9, 2012
CAPTURE OF PROTEIN
                        ANTIGENS BY APCs
• Epithelia contain a
        population of
        professional APCs
        that belong to the
        lineage of dendritic
        cells

• The same cells are
        present in the T-cell
        rich areas of
        peripheral lymphoid
        organs, and in smaller
        number, in most
        other organs
Monday, July 9, 2012
CAPTURE OF PROTEIN
                        ANTIGENS BY APCs
 • Langerhans cells: epidermal dendritic cells
         in the skin
 • “immature” = inefficient in stimulating T-
         lymphocytes
 • capture the antigens:
    • phagocytosis = for particulate antigens
    • pinocytosis = soluble antigens
Monday, July 9, 2012
Monday, July 9, 2012
CAPTURE OF PROTEIN
                        ANTIGENS BY APCs
 • During their migration, and probably in response to
         the microbe the dendritic cells mature; and in the
         lymph nodes, the dendritic cells present antigens to
         naive T-lymphocytes

 • Dendritic cells at different stages of their
         maturation may express different membrane
         proteins

 • Immature dendritic cells express surface receptors
         that capture microbial antigens, whereas mature
         dendritic cells express high levels of MHC molecules
         and co-stimulators, which function to stimulate T-
         cells
Monday, July 9, 2012
CAPTURE OF PROTEIN
                        ANTIGENS BY APCs
   •       Different types of APCs serve distinct functions in T-cell dependent
           immune response

                •      Dendritic cells: principal inducers of such responses because
                       dendritic cells are the most potent APCs for activating naive T-
                       lymphocytes; Dendritic cells not only initiate T-cell responses
                       but may also influence the nature of the response

                •      Macrophages: phagocytose microbes and display the antigens of
                       these microbes to effector T-cells, which activate the
                       macrophage to kill the microbes

                •      B-lymphocytes: ingest protein antigens and display them to
                       helper T cells; this process is important for the development of
                       humoral immune responses

   •       NOTE: all nucleated cells can present antigens derived from microbes in
           the cytoplasm to CTLs

Monday, July 9, 2012
CAPTURE OF PROTEIN
                        ANTIGENS BY APCs
   •       Professional APCs may also be involved in initiating the responses of
           CD8+ T-lymphocytes to the antigens of intracellular microbes

   •       CROSS-PRESENTATION (or cross-priming):

   •       one cell-type, the professional APCs, can present the antigens of other
           cells, the infected cells, and prime (or activate) naive T lymphocytes
           specific for these antigens

   •       The professional APCs that ingest infected cells may also present the
           microbial antigens toCD4+ helper T-lymphocytes. Thus, both classes of
           T lymphocytes, CD4+ and CD8+ cells, specific for the same microbe are
           activated close to one another

   •       IMPORTANCE: for the antigen-stimulated differentiation of naive CD8+
           T cells to effector CTLs which often requires help from CD4+ T-cells.
           Once the CD8+ T cells have differentiated into CTLs, they kill infected
           host cells without any need for professional APCs or signals other than
           recognition of antigen

Monday, July 9, 2012
CROSS-PRIMING




Monday, July 9, 2012
How are these
                       antigens displayed to
                         T- lymphocytes?!



Monday, July 9, 2012
ANSWER:
                  MHC MOLECULES


Monday, July 9, 2012
MAJOR
                       HISTOCOMPATIBILITY
                         COMPLEX (MHC)
       •      membrane proteins on APCs that display peptide
              antigens for recognition by T lymphocytes

       •      discovered as the genetic locus that is the principal
              determinant of acceptance or rejection of tissue grafts
              exchanged between individuals

       •      individuals that are identical at their MHC locus (inbred
              animals and identical twins) will accept grafts from one
              another, and individuals that differ at their MHC loci
              will reject such grafts

       •      physiologic function: to display peptides derived from
              protein antigens to antigen-specific T-lymphocyte
Monday, July 9, 2012
MAJOR
                       HISTOCOMPATIBILITY
                         COMPLEX (MHC)
      •       MHC locus is a collection of genes found in all mammals

      •       Human MHC proteins are called human leukocyte antigens
              (HLA),	

 because these	

 proteins	

were discovered as antigens
              of leukocytes that could be identified with specific
              antibodies; the genes encoding these molecules make up
              the HLA locus

      •       In all species, the MHC locus contains two sets of highly
              polymorphic genes, called the class 1 and class II MHC
              genes

      •       These genes encode the class I and class II MHC molecules
              that display peptides to T-cells

Monday, July 9, 2012
MAJOR
                       HISTOCOMPATIBILITY
                         COMPLEX (MHC)




Monday, July 9, 2012
CLASS I & CLASS II MHC MOLECULES ARE
       MEMBRANE PROTEINS THAT EACH
     CONTAINS A PEPTIDE-BINDING CLEFT AT
           ITS AMINO TERMINAL END




Monday, July 9, 2012
CLASS I & CLASS II MHC MOLECULES ARE
       MEMBRANE PROTEINS THAT EACH
     CONTAINS A PEPTIDE-BINDING CLEFT AT
           ITS AMINO TERMINAL END




Monday, July 9, 2012
PROPERTIES OF MHC
                 GENES & MOLECULES




Monday, July 9, 2012
PROPERTIES OF MHC
                 GENES & MOLECULES
     •       Class I molecules are expressed on all nucleated cells, but
             Class II molecules are expressed mainly on professional
             APCS such as dendritic cells, and on macrophages and B
             lymphocytes




Monday, July 9, 2012
PROPERTIES OF MHC
                 GENES & MOLECULES
      •       The peptide-binding clefts of
              MHC molecules bind peptides
              derived from protein antigens
              and display these peptides for
              recognition by T cells




Monday, July 9, 2012
FEATURES OF PEPTIDE BINDING
           TO MHC MOLECULES




Monday, July 9, 2012
FEATURES OF PEPTIDE BINDING
           TO MHC MOLECULES




Monday, July 9, 2012
FEATURES OF PEPTIDE BINDING
           TO MHC MOLECULES




Monday, July 9, 2012
PROCESSING OF
                          PROTEIN
                         ANTIGENS


Monday, July 9, 2012
PATHWAYS OF INTRACELLULAR
      PROCESSING OF PROTEIN




Monday, July 9, 2012
Monday, July 9, 2012
CLASS II
                         MHC
                       PATHWAY


Monday, July 9, 2012
CLASS I
                         MHC
                       PATHWAY


Monday, July 9, 2012
MHC & CD4+/CD8+ T CELLS




Monday, July 9, 2012
QUESTIONS???



Monday, July 9, 2012
ANTIGEN
                       RECOGNITION


Monday, July 9, 2012
IMPORTANT
                         POINTS
       • How do the antigen receptors of lymphocytes
               recognize extremely diverse antigens and transmit
               quite conserved activating signals to the cells?

       • How is the vast diversity of receptor structures
               generated in lymphocytes?

       • NOTE: The diversity of antigen recognition implies the
               existence of many structurally different antigen
               receptor proteins, more than can be reasonably
               encoded in the inherited genome (germline) = THUS,
               there must be special mechanisms for generating this
               diversity!

Monday, July 9, 2012
ANTIGEN RECEPTORS
                        OF LYMPHOCYTES




Monday, July 9, 2012
ANTIGEN RECEPTORS
                        OF LYMPHOCYTES
                          ANTIBODY   TCR




Monday, July 9, 2012
RECALL...ANTIBODIES




Monday, July 9, 2012
RECALL...ANTIBODIES




Monday, July 9, 2012
RECALL...ANTIBODIES




Monday, July 9, 2012
STRUCTURE OF T-CELL
         RECEPTOR FOR ANTIGENS




Monday, July 9, 2012
RECOGNITION OF A PEPTIDE-
         MHC COMPLEX BY A TCR




Monday, July 9, 2012
ANTIGEN
                       RECOGNITION




Monday, July 9, 2012
ANTIGEN RECOGNITION




Monday, July 9, 2012
LYMPHOCYTE MATURATION




Monday, July 9, 2012
PRODUCTION
                        OF DIVERSE
                         ANTIGEN
                        RECEPTORS




Monday, July 9, 2012
RECOMBINATION & EXPRESSION
           OF Ig GENES




Monday, July 9, 2012
MECHANISMS OF DIVERSITY IN
                   ANTIGEN RECEPTORS




Monday, July 9, 2012
MATURATION & SELECTION OF
           B-LYMPHOCYTES




Monday, July 9, 2012
MATURATION & SELECTION OF
    MHC-RESTRICTED T-LYMPHOCYTES




Monday, July 9, 2012
QUESTIONS???



Monday, July 9, 2012
NEXT MEETING:
                        HUMORAL &
                         CELLULAR
                          IMMUNE
                         RESPONSE
Monday, July 9, 2012

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Bio 151 lec 3 2012 2013 (part 2)

  • 1. ADAPTIVE IMMUNITY Monday, July 9, 2012
  • 2. IMPORTANT POINTS • What is Adaptive Immune Response? • What is the difference between T and B cell function for adaptive immune response? • What are Antigen-Presenting Cells (APCs)? • What is the role of MHC in adaptive response? Monday, July 9, 2012
  • 3. ADAPTIVE IMMUNE RESPONSE • initiated when antigen receptors of lymphocytes recognize the antigens • B lymphocytes receptors (membrane-bound-antibodies): proteins, polysaccharides, lipids, nucleic acids, small chemicals in soluble or cell surface- associated form • humoral • generated against many types of microbial cell walls and soluble antigens • T lymphocytes receptors: peptide fragments of protein antigens • presented by specialized display molecules on host cells • cell-mediated • generated only against the protein antigens of microbes that are associated with host cells Monday, July 9, 2012
  • 4. BARRIERS TO THE INDUCTION OF ADAPTIVE IMMUNE RESPONSE • low frequency of naive lymphocytes in the body specific for any one antigen (may be less than 1 in every 100,000) which has to LOCATE and REACT rapidly to the antigen wherever it is introduced • different kinds of microbes need to be combated by different types of adaptive response (even to the same microbe at different stages of its life) • e.g. virus (blood stages = antibodies; host cell stages = CTLs) Monday, July 9, 2012
  • 5. ANTIGEN CAPTURE & PRESENTATION Monday, July 9, 2012
  • 6. ANTIGEN RECOGNITION BY T LYMPHOCYTES • The majority of T lymphocytes recognize peptide antigens that are bound to and displayed by the major histocompatibility complex (MHC) molecules of antigen-presenting cells (APCs). • MHC: genetic locus whose principal products function as the peptide display molecules of the immune system • MHC restriction: unique for each individual; different clones of T cells can see peptides only when these peptides are displayed by that individual's MHC molecules Monday, July 9, 2012
  • 7. ANTIGEN RECOGNITION BY T LYMPHOCYTES • DUAL SPECIFICITY OF T-CELLS: • T cell receptor (TCR) recognizes some residues of peptide antigen • T cell receptor (TCR) recognizes residues of the MHC molecule that is displaying that peptide Monday, July 9, 2012
  • 8. ANTIGEN-PRESENTING CELLS (APCs) • specialized cells that capture microbial antigens and display them for recognition by T lymphocytes • “professional” APCs: ability to both display antigens for T cells and provide the additional signals needed to activate naive T cells • Differentiated effector T cells again need to see antigens presented by various APCs, to activate the effector functions of the T cells in humoral and cell-mediated immune responses. • How does APCs present antigens to trigger immune responses? • What is the role of MHC molecules in these processes? Monday, July 9, 2012
  • 9. CAPTURE OF PROTEIN ANTIGENS BY APCs • Protein antigens of microbes that enter the body are captured by professional APCs and are concentrated in the peripheral lymphoid organs where immune are initiated Monday, July 9, 2012
  • 10. CAPTURE OF PROTEIN ANTIGENS BY APCs • Epithelia contain a population of professional APCs that belong to the lineage of dendritic cells • The same cells are present in the T-cell rich areas of peripheral lymphoid organs, and in smaller number, in most other organs Monday, July 9, 2012
  • 11. CAPTURE OF PROTEIN ANTIGENS BY APCs • Langerhans cells: epidermal dendritic cells in the skin • “immature” = inefficient in stimulating T- lymphocytes • capture the antigens: • phagocytosis = for particulate antigens • pinocytosis = soluble antigens Monday, July 9, 2012
  • 13. CAPTURE OF PROTEIN ANTIGENS BY APCs • During their migration, and probably in response to the microbe the dendritic cells mature; and in the lymph nodes, the dendritic cells present antigens to naive T-lymphocytes • Dendritic cells at different stages of their maturation may express different membrane proteins • Immature dendritic cells express surface receptors that capture microbial antigens, whereas mature dendritic cells express high levels of MHC molecules and co-stimulators, which function to stimulate T- cells Monday, July 9, 2012
  • 14. CAPTURE OF PROTEIN ANTIGENS BY APCs • Different types of APCs serve distinct functions in T-cell dependent immune response • Dendritic cells: principal inducers of such responses because dendritic cells are the most potent APCs for activating naive T- lymphocytes; Dendritic cells not only initiate T-cell responses but may also influence the nature of the response • Macrophages: phagocytose microbes and display the antigens of these microbes to effector T-cells, which activate the macrophage to kill the microbes • B-lymphocytes: ingest protein antigens and display them to helper T cells; this process is important for the development of humoral immune responses • NOTE: all nucleated cells can present antigens derived from microbes in the cytoplasm to CTLs Monday, July 9, 2012
  • 15. CAPTURE OF PROTEIN ANTIGENS BY APCs • Professional APCs may also be involved in initiating the responses of CD8+ T-lymphocytes to the antigens of intracellular microbes • CROSS-PRESENTATION (or cross-priming): • one cell-type, the professional APCs, can present the antigens of other cells, the infected cells, and prime (or activate) naive T lymphocytes specific for these antigens • The professional APCs that ingest infected cells may also present the microbial antigens toCD4+ helper T-lymphocytes. Thus, both classes of T lymphocytes, CD4+ and CD8+ cells, specific for the same microbe are activated close to one another • IMPORTANCE: for the antigen-stimulated differentiation of naive CD8+ T cells to effector CTLs which often requires help from CD4+ T-cells. Once the CD8+ T cells have differentiated into CTLs, they kill infected host cells without any need for professional APCs or signals other than recognition of antigen Monday, July 9, 2012
  • 17. How are these antigens displayed to T- lymphocytes?! Monday, July 9, 2012
  • 18. ANSWER: MHC MOLECULES Monday, July 9, 2012
  • 19. MAJOR HISTOCOMPATIBILITY COMPLEX (MHC) • membrane proteins on APCs that display peptide antigens for recognition by T lymphocytes • discovered as the genetic locus that is the principal determinant of acceptance or rejection of tissue grafts exchanged between individuals • individuals that are identical at their MHC locus (inbred animals and identical twins) will accept grafts from one another, and individuals that differ at their MHC loci will reject such grafts • physiologic function: to display peptides derived from protein antigens to antigen-specific T-lymphocyte Monday, July 9, 2012
  • 20. MAJOR HISTOCOMPATIBILITY COMPLEX (MHC) • MHC locus is a collection of genes found in all mammals • Human MHC proteins are called human leukocyte antigens (HLA), because these proteins were discovered as antigens of leukocytes that could be identified with specific antibodies; the genes encoding these molecules make up the HLA locus • In all species, the MHC locus contains two sets of highly polymorphic genes, called the class 1 and class II MHC genes • These genes encode the class I and class II MHC molecules that display peptides to T-cells Monday, July 9, 2012
  • 21. MAJOR HISTOCOMPATIBILITY COMPLEX (MHC) Monday, July 9, 2012
  • 22. CLASS I & CLASS II MHC MOLECULES ARE MEMBRANE PROTEINS THAT EACH CONTAINS A PEPTIDE-BINDING CLEFT AT ITS AMINO TERMINAL END Monday, July 9, 2012
  • 23. CLASS I & CLASS II MHC MOLECULES ARE MEMBRANE PROTEINS THAT EACH CONTAINS A PEPTIDE-BINDING CLEFT AT ITS AMINO TERMINAL END Monday, July 9, 2012
  • 24. PROPERTIES OF MHC GENES & MOLECULES Monday, July 9, 2012
  • 25. PROPERTIES OF MHC GENES & MOLECULES • Class I molecules are expressed on all nucleated cells, but Class II molecules are expressed mainly on professional APCS such as dendritic cells, and on macrophages and B lymphocytes Monday, July 9, 2012
  • 26. PROPERTIES OF MHC GENES & MOLECULES • The peptide-binding clefts of MHC molecules bind peptides derived from protein antigens and display these peptides for recognition by T cells Monday, July 9, 2012
  • 27. FEATURES OF PEPTIDE BINDING TO MHC MOLECULES Monday, July 9, 2012
  • 28. FEATURES OF PEPTIDE BINDING TO MHC MOLECULES Monday, July 9, 2012
  • 29. FEATURES OF PEPTIDE BINDING TO MHC MOLECULES Monday, July 9, 2012
  • 30. PROCESSING OF PROTEIN ANTIGENS Monday, July 9, 2012
  • 31. PATHWAYS OF INTRACELLULAR PROCESSING OF PROTEIN Monday, July 9, 2012
  • 33. CLASS II MHC PATHWAY Monday, July 9, 2012
  • 34. CLASS I MHC PATHWAY Monday, July 9, 2012
  • 35. MHC & CD4+/CD8+ T CELLS Monday, July 9, 2012
  • 37. ANTIGEN RECOGNITION Monday, July 9, 2012
  • 38. IMPORTANT POINTS • How do the antigen receptors of lymphocytes recognize extremely diverse antigens and transmit quite conserved activating signals to the cells? • How is the vast diversity of receptor structures generated in lymphocytes? • NOTE: The diversity of antigen recognition implies the existence of many structurally different antigen receptor proteins, more than can be reasonably encoded in the inherited genome (germline) = THUS, there must be special mechanisms for generating this diversity! Monday, July 9, 2012
  • 39. ANTIGEN RECEPTORS OF LYMPHOCYTES Monday, July 9, 2012
  • 40. ANTIGEN RECEPTORS OF LYMPHOCYTES ANTIBODY TCR Monday, July 9, 2012
  • 44. STRUCTURE OF T-CELL RECEPTOR FOR ANTIGENS Monday, July 9, 2012
  • 45. RECOGNITION OF A PEPTIDE- MHC COMPLEX BY A TCR Monday, July 9, 2012
  • 46. ANTIGEN RECOGNITION Monday, July 9, 2012
  • 49. PRODUCTION OF DIVERSE ANTIGEN RECEPTORS Monday, July 9, 2012
  • 50. RECOMBINATION & EXPRESSION OF Ig GENES Monday, July 9, 2012
  • 51. MECHANISMS OF DIVERSITY IN ANTIGEN RECEPTORS Monday, July 9, 2012
  • 52. MATURATION & SELECTION OF B-LYMPHOCYTES Monday, July 9, 2012
  • 53. MATURATION & SELECTION OF MHC-RESTRICTED T-LYMPHOCYTES Monday, July 9, 2012
  • 55. NEXT MEETING: HUMORAL & CELLULAR IMMUNE RESPONSE Monday, July 9, 2012