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The Human Genome
From Peas and fruit flies to humans…
What is a genome???
• All the genetic information (genes) that make
  up an organism
What makes us human?
• Analyze human chromosome…
• Karotype
  – Picture of all the chromosomes
    in an organism
  – Autosomes
     • CHROMOSOMES 1-44 (pairs 1-22)
     • Autosomal chromsomes
  – Sex chromosomes
     • Determine a person’s sex (male XY
       or female XX)
     • Chromosome 45 and 46 (set 23)
Pedigree Charts
• Shows relationships within a family
• Genetic counselors use these to infer the
  genotypes of family members
• Look at each generation different symbols
  used
Disorders can be recessive or
         dominant
Recessive disorders
• Disorder phenylketonuria (PKU)
• Caused by an autosomal recessive allele on
  chromosome 12
• People with this disorder lack the enzyme to
  break down phenylalanine (amino acid found in
  milk and many other foods)
  – In newborns, this causes a build up of phenylalanine
    in tissues during the first few years of life and lead to
    mental retardation
  – Newborns are commonly tested for PKU and then put
    on a low phenylalanine diet if they have the disorder
Autosomal Recessive Allele
• Tay-Sachs Disease
  – Recessive allele in Jewish families of central and eastern
    Europe ancestry
  – Lack the enzyme to break down lipids in neural cells
     • Lipid accumulation in brain cells
  – Leads to nervous system break-down and death in the
    first few years of life
Autosomal Recessive
        Disorders
• Cystic Fibrosis
  – Do not have the gene that
    regulates mucus production
  – Excess mucus in lungs, digestive
    tract, and liver
  – Increased susceptibility to
    disorders
  – Lung transplants usually
    needed after childhood
Autosomal Dominant Disorders
• You will express disorder if
  you are homozygous or
  heterozygous dominant for
  that trait
  – You also have higher chances
    of passing onto your children
• Dwarfism (achondroplasia)
• Huntington’s Disease
  – Nervous system disorder
Co-Dominant Alleles Disorders
• Sickle cell anemia
• 1/500 African Americans have the
  disorder
• Co-dominant allele
• Causes blockages in blood vessels,
  preventing oxygen from getting to
  other cells and tissues
• Beneficial in central and east Africa
  because it helped destroy malaria
   – If you had SCA, your body would
     destroy the sickle cells to protect itself
     and in the process, destroy the
     malaria parasite as well
Sex-Linked Disorders
• Many sex-linked genes are
  found on x-chromosome
• Many genetic disorders are
  sex-linked
• Males have just ONE x
  chromosome, so whatever
  the X chromosome is
  carrying (dominant or
  recessive) will be expressed
• Fathers can pass it to their
  daughters and the disorder
  can show up in the
  daughters sons
Sex-linked Disorders
• Red-green Color-blindness
  – 1/10 men
  – 1/100 women
• Hemophilia
  – Two important genes on x-chr control
    blood clotting
  – Person with disorder can die from minor
    cuts
  – Recessive allele in either gene can cause it
• Duchenne Muscular Dystrophy
  – Caused by defective version of a gene for a
    muscle protein
  – Progressive weakening and loss of skeletal
    muscle1/3000 males
X-chromosome Inactivation
• Females have XX and males have XY…is
  the second X chr in females needed??
• British Geneticist Mary Lyon
• In female cells, one x-chromosome is
  randomly shut off…this “shut off”
  chromosome is called a Barr Body
• Different X-chrm are switched off in
  different cells
• Generally not found in males b/c X-chrm
  needs to be ACTIVE
• Occurs in other mammals as well
• Barr bodies in cats
• Gene that controls color of coat spots is located
  on the X-chrm
   – In a female, one X-chrm may have the allele for
     orange spots and the other X-chrm may have the
     allele for black spots
   – Different cells in different parts of the cat’s body are
     switched off= different colored spots on different
     parts of the cat…mix or orange and black spots
   – Males only have ONE active X-chrm…therefore, will
     they have different colored spots?
      • No…only psots of ONE color (b/c on ONE active X)
• This is one way to determine the sex of a cat…cat
  with black AND orange spots is almost always
  certainly female
Chromosomal Disorders
• Mechanics of meiosis (where we separate
  chromosomes) is usually pretty good
• But nobody’s perfect…mistakes happen….
• Most common problem…
  – Nondisjunction: when homologous chromosomes fail
    to separate properly
  – Literally means “not coming apart”
  – If this occurs, ABNORMAL #s of chromosomes may
    find their way into gametes and a disorder of
    chromosome number may result
Nondisjunction
• If one of the gametes with an ABNORMAL #
  ends up getting fertilized, MAJOR problems!!!
  – Trisomy: “three bodies”
     • Occurs when an autosomal chromosome fails to
       separate during meiosis
        – When do chrm separate?
           » Anaphase I and Anaphase 2
     • One gamete ends up with an extra copy of a
       chromosome and then the fertilized zygote ends up
       with 3 copies of a chrm instead of 2
     • Example: Downs Syndrome
Down Syndrome
• Extra copy of chromosome 21
   – 1/800 baby’s are born with this
     disorder
• Produces mild to severe retardation
• Increased susceptibility to diseases,
  slower development, and higher
  frequency of birth defects
• How can one little extra copy cause
  so many problems?
   – Scientists are still trying to figure that
     out…now that they have used gene
     mapping and identified all the genes
     on chromosome 21, they can begin
     experimenting on this problem
Sex Chromosome Disorders
• What happens if nondisjunction happens to the sex
  chromosomes???
• We know we need at least one X chromosome….
   – No embryos have been found with just a Y chromosome so we now X
     chrm contains vital genes!
• Turners Syndrome
   – Females receive only one X chromosome
   – Karotype 45, X
   – Unable to reproduce, sex organs do not develop at puberty
• Klinefelters Syndrome
   – Males receive an extra X chromosome
   – Karotype 47, XXY
   – Prevents individuals from reproducing
   – Cases of individuals with XXXY and XXXXY
   – Y chromosome contains “sex determining region” SDR, which gives
     male characteristics and development
   – If region is absent, embryo develops into female
Turner’s Syndrome
• What about an extra Y?
• Males with 47, XYY produce
  more male hormones and
  express a more expressive
  behavior
   – More testosterone=more
     aggressive behavior
• Higher number of men in prison
  for violent crimes have XYY
  however there is a large
  population of men with XYY
  that do not exhibit (or at least
  act upon) this aggression
   – Cannot use this as an excuse for
     aggressive behavior or else
     criminals would be pleading an
     extra Y instead of insanity :-o

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Human genetics

  • 1. The Human Genome From Peas and fruit flies to humans…
  • 2.
  • 3. What is a genome??? • All the genetic information (genes) that make up an organism
  • 4. What makes us human? • Analyze human chromosome… • Karotype – Picture of all the chromosomes in an organism – Autosomes • CHROMOSOMES 1-44 (pairs 1-22) • Autosomal chromsomes – Sex chromosomes • Determine a person’s sex (male XY or female XX) • Chromosome 45 and 46 (set 23)
  • 5.
  • 6. Pedigree Charts • Shows relationships within a family • Genetic counselors use these to infer the genotypes of family members • Look at each generation different symbols used
  • 7.
  • 8. Disorders can be recessive or dominant
  • 9.
  • 10. Recessive disorders • Disorder phenylketonuria (PKU) • Caused by an autosomal recessive allele on chromosome 12 • People with this disorder lack the enzyme to break down phenylalanine (amino acid found in milk and many other foods) – In newborns, this causes a build up of phenylalanine in tissues during the first few years of life and lead to mental retardation – Newborns are commonly tested for PKU and then put on a low phenylalanine diet if they have the disorder
  • 11. Autosomal Recessive Allele • Tay-Sachs Disease – Recessive allele in Jewish families of central and eastern Europe ancestry – Lack the enzyme to break down lipids in neural cells • Lipid accumulation in brain cells – Leads to nervous system break-down and death in the first few years of life
  • 12. Autosomal Recessive Disorders • Cystic Fibrosis – Do not have the gene that regulates mucus production – Excess mucus in lungs, digestive tract, and liver – Increased susceptibility to disorders – Lung transplants usually needed after childhood
  • 13. Autosomal Dominant Disorders • You will express disorder if you are homozygous or heterozygous dominant for that trait – You also have higher chances of passing onto your children • Dwarfism (achondroplasia) • Huntington’s Disease – Nervous system disorder
  • 14. Co-Dominant Alleles Disorders • Sickle cell anemia • 1/500 African Americans have the disorder • Co-dominant allele • Causes blockages in blood vessels, preventing oxygen from getting to other cells and tissues • Beneficial in central and east Africa because it helped destroy malaria – If you had SCA, your body would destroy the sickle cells to protect itself and in the process, destroy the malaria parasite as well
  • 15.
  • 16. Sex-Linked Disorders • Many sex-linked genes are found on x-chromosome • Many genetic disorders are sex-linked • Males have just ONE x chromosome, so whatever the X chromosome is carrying (dominant or recessive) will be expressed • Fathers can pass it to their daughters and the disorder can show up in the daughters sons
  • 17. Sex-linked Disorders • Red-green Color-blindness – 1/10 men – 1/100 women • Hemophilia – Two important genes on x-chr control blood clotting – Person with disorder can die from minor cuts – Recessive allele in either gene can cause it • Duchenne Muscular Dystrophy – Caused by defective version of a gene for a muscle protein – Progressive weakening and loss of skeletal muscle1/3000 males
  • 18. X-chromosome Inactivation • Females have XX and males have XY…is the second X chr in females needed?? • British Geneticist Mary Lyon • In female cells, one x-chromosome is randomly shut off…this “shut off” chromosome is called a Barr Body • Different X-chrm are switched off in different cells • Generally not found in males b/c X-chrm needs to be ACTIVE • Occurs in other mammals as well
  • 19. • Barr bodies in cats • Gene that controls color of coat spots is located on the X-chrm – In a female, one X-chrm may have the allele for orange spots and the other X-chrm may have the allele for black spots – Different cells in different parts of the cat’s body are switched off= different colored spots on different parts of the cat…mix or orange and black spots – Males only have ONE active X-chrm…therefore, will they have different colored spots? • No…only psots of ONE color (b/c on ONE active X) • This is one way to determine the sex of a cat…cat with black AND orange spots is almost always certainly female
  • 20.
  • 21. Chromosomal Disorders • Mechanics of meiosis (where we separate chromosomes) is usually pretty good • But nobody’s perfect…mistakes happen…. • Most common problem… – Nondisjunction: when homologous chromosomes fail to separate properly – Literally means “not coming apart” – If this occurs, ABNORMAL #s of chromosomes may find their way into gametes and a disorder of chromosome number may result
  • 22. Nondisjunction • If one of the gametes with an ABNORMAL # ends up getting fertilized, MAJOR problems!!! – Trisomy: “three bodies” • Occurs when an autosomal chromosome fails to separate during meiosis – When do chrm separate? » Anaphase I and Anaphase 2 • One gamete ends up with an extra copy of a chromosome and then the fertilized zygote ends up with 3 copies of a chrm instead of 2 • Example: Downs Syndrome
  • 23.
  • 24.
  • 25. Down Syndrome • Extra copy of chromosome 21 – 1/800 baby’s are born with this disorder • Produces mild to severe retardation • Increased susceptibility to diseases, slower development, and higher frequency of birth defects • How can one little extra copy cause so many problems? – Scientists are still trying to figure that out…now that they have used gene mapping and identified all the genes on chromosome 21, they can begin experimenting on this problem
  • 26. Sex Chromosome Disorders • What happens if nondisjunction happens to the sex chromosomes??? • We know we need at least one X chromosome…. – No embryos have been found with just a Y chromosome so we now X chrm contains vital genes! • Turners Syndrome – Females receive only one X chromosome – Karotype 45, X – Unable to reproduce, sex organs do not develop at puberty • Klinefelters Syndrome – Males receive an extra X chromosome – Karotype 47, XXY – Prevents individuals from reproducing – Cases of individuals with XXXY and XXXXY – Y chromosome contains “sex determining region” SDR, which gives male characteristics and development – If region is absent, embryo develops into female
  • 28.
  • 29. • What about an extra Y? • Males with 47, XYY produce more male hormones and express a more expressive behavior – More testosterone=more aggressive behavior • Higher number of men in prison for violent crimes have XYY however there is a large population of men with XYY that do not exhibit (or at least act upon) this aggression – Cannot use this as an excuse for aggressive behavior or else criminals would be pleading an extra Y instead of insanity :-o