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BioTorrents: A File Sharing Service for Scientific Data

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Morgan Langille
Morgan Langille

I present an overview of BioTorrents.net. This was presented at the Open Science Summit 2010 conference in Berkeley, CA.

Technology
1 of 17
Morgan Langille, PhD Open Science Summit 2010 Berkeley, California July 29 st , 2010
Acknowledgements ,[object Object],[object Object],[object Object],[object Object],[object Object]
Motivation ,[object Object],[object Object],[object Object],[object Object]
Personal Challenges ,[object Object],[object Object],[object Object]
Traditional file transfer methods ,[object Object],[object Object],[object Object],[object Object]
Peer-to-peer file transfer: BitTorrent ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
BitTorrent: How it works ,[object Object],[object Object],[object Object],[object Object],.torrent “ Tracker” server
Other BitTorrent Advantages ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
BitTorrent Trackers ,[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],Langille & Eisen, 2010, PLoS ONE 5: e10071 .
BioTorrents: Advanced Features ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
BioTorrents progress ,[object Object],[object Object],[object Object],[object Object]
Real Example ,[object Object],NCBI to UC Davis Download speed Time Max 30MB/s 2 hours FTP to other server ~10MB/s 6 hours FTP to NCBI ~.5MB/s 5 days
Who will use BioTorrents? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Issues ,[object Object],[object Object],[object Object],[object Object]
Future ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Final Message ,[object Object],[object Object],[object Object]

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BioTorrents: A File Sharing Service for Scientific Data

  • 1. Morgan Langille, PhD Open Science Summit 2010 Berkeley, California July 29 st , 2010
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Editor's Notes

  1. 2) Mention strict structure of existing dbs
  2. Bandwidth limited because of intermediate links (geospatial)
  3. 25-50% of all Internet traffic is BitTorrent traffic
  4. Link to paper
  5. Existing data providers (NCBI, EBI, JGI, etc.) Scientists sharing manuscript supplementary data All data is bundled together and given a unique id Easier than setting up a Web/FTP server Scientists that want to provide immediate access to their data and results Pre/post publication Data that might not be suitable for existing databases Results that may not be sufficient for publication