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Open Participatory Science

        Philip E. Bourne
      pbourne@ucsd.edu



          JISC/CNI Workshop 2012
My Perspective
•   US centric
•   Associate Vice Chancellor (Administrative)
•   Professor (Faculty, Education)
•   Resource provider (PDB)
•   OA advocate (PLoS EIC)
•   Comp Biol / life sciences (Research)



                     JISC/CNI Workshop 2012
Future Scenario - Research
• At home, prior to leaving for the lab., Jane, syncs her
  iResearcher with the latest feed from her discovery tool. On
  the bus she reviews the stream, selecting a video “paper”
  close to her interest in HIV-1 proteases. The data shows
  apparent anomalies with her own work. By the time the bus
  stops she has recomputed the results, proven the anomaly
  and written a rebuttal and sent it to the open institutional
  archive for community scrutiny. Later in the day she reviews
  the associated commentary and notes from the institutional
  librarian about other on-line resources she should consider to
  support her argument. After further work that evening she
  triggers a link to the journal from the institutional archive
  which at the same time invokes several social media sources
  raising awareness of the rebuttal 2012
                            JISC/CNI Workshop
Implications
• We have discovery informatics tools that work
  narrow and deeply
• The “paper” becomes a seamless source of
  data and methods to reproduce the
  experiment
• Librarians are the custodians of institutional
  repositories
• Institutional repositories are useful

                   JISC/CNI Workshop 2012
Future Scenario - Education
• Mary has decided she want to pursue an
  undergraduate degree with a major in
  biochemistry.
• A review of the higher education portal provides
  a rank ordered list of institutions with associated
  costs, virtual course catalog, in person structure,
  and success ranking.
• She chooses the World University campus in
  Birmingham (WUB) for the depth of its virtual
  offerings and forward looking group participatory
  structure and new experimental labs.

                     JISC/CNI Workshop 2012
Implications
• Basic lectures are virtual learn at your own pace
  and supplemented by professorial meetings. The
  open education courseware system that the WUB
  has access to provides lectures by world leaders
  who are excellent educators
• The group participatory structure has labs where
  the professor actually works with students
• Student ratings drive enrolments and course
  structure
                    JISC/CNI Workshop 2012
Other Drivers of Change:
          The Story of Meredith

• Citizen Science beyond the norm
• Made possible by OA
• Children heard but not seen

• Academic institutions are hierarchical
  knowledge acquisition is not

                   JISC/CNI Workshop 2012
Institutional Response Thus Far
• Universities - Limited
  – Institutional repositories
  – Libraries – funding issues
  – My corridor – Research Works Act
  – UCSF – Faculty speaking
• Government - Drivers
  – NIH/Wellcome etc OA policies
  – NSF/NIH Data sharing policies

                    JISC/CNI Workshop 2012
What is Needed? - Government
•   Enforcement of data sharing policies
•   Enforcement of open access policies
•   Standardization of their own archives
•   Guaranteed funding of archives (eg PDB)
•   Mechanisms to support international efforts –
    science is global; funding is not



                     JISC/CNI Workshop 2012
What is Needed? - Institution
• Recognition of staff as faculty
• Centers of Scholarly Innovation
• Push for institutional repository standardization
  leading to quality improvements, reproducibility etc.
• Make institutional repositories more customer valuable
  and friendly
• Better educate Committees on Academic Promotion
• Recognize and reward innovation in scholarly
  communication


                      JISC/CNI Workshop 2012
What is Needed? - Faculty
• Reward!
• Push publishers
• Better sharing between those in the know and
  those not
• Exemplars that really show broad value –
  examples to date:
  – Google Scholar Profile
  – Mendeley
  – Evernote
                     JISC/CNI Workshop 2012
One Solution:
Use the Traditional Reward System in New Ways
    The Wikipedia Experiment – Topic Pages


                              • Identify areas of Wikipedia that
                                relate to the journal that are
                                missing of stubs
                              • Develop a Wikipedia page in the
                                sandbox
                              • Have a Topic Page Editor review
                                the page
                              • Publish the copy of record with
                                associated rewards
                              • Release the living version into
                                Wikipedia


               JISC/CNI Workshop 2012
What new skills and infrastructures do
             we need?
•   Data journals
•   App model for science
•   Publish workflows
•   Better use of rich media




                     JISC/CNI Workshop 2012
Podium Capture
    Step 1                           Mac
                                     PC
presenter starts
  PowerPoint
                                                           Step 4
                                                Slides
                                                         slides are
                                                         uploaded

                                                               Website

                                   Step 3
                             presenter stops
                              recording and
                             initiates upload                Step 5
     Step 2
presenter starts                                      slides and podcast       Step 6
  recording on                                         are automatically      listener
  smart phone                               Sync File    synchronized       plays back
                                            Podcast
                                                                           synchronized
                                                                            presentation

                       Android
                       iPhone
                   Windows Phone 7         JISC/CNI Workshop 2012
How do we create meaningful and
   effective engagement with the key
                players?
• Government
  – Funding across the stakeholders
• Increase the visibility an deliverables of the
  efforts to date
  – Force11




                    JISC/CNI Workshop 2012
What are the new roles and
        responsibilities required?
• Librarians need to convince university
  administrators of the value of a new and
  emerging role
• Need high level administrators responsible for
  on-line educational content
• Need on-site faculty and student training of
  new technologies


                   JISC/CNI Workshop 2012
Workshop Objective
• The objective of the event is to identify opportunities
  for research universities to capitalise on new and
  emerging forms of scholarly discourse. The outcomes
  of the event will be increased understanding of the
  opportunities from changing scholarly communications
  for universities to build on their core mission, whilst
  offering technical and thought leaders a chance to
  explore institutional needs and concerns in order to
  help shape future innovations. It will contribute to a
  shared international understanding of the issues facing
  universities and other stakeholders. Outputs will be a
  high quality report and record of the proceedings via
  different media.

                       JISC/CNI Workshop 2012
Session Objective
• As digital communications present the opportunity for researchers
  to reach out into the global publics, what does this mean for how
  we manage and present our scholarly activity? High-profile citizen
  science initiatives and inter-disciplinary volunteering efforts,
  enhanced data sharing and re-use and emerging data science
  agendas are all having a significant impact on domain practice,
  institutional infrastructure and requirements for new roles and
  responsibilities. These are accompanied by innovative
  experimentation with new publishing platforms and novel
  approaches to assuring research integrity, quality and peer-review.
  How do we create meaningful and effective engagement with the
  key players? What are the new roles and responsibilities required?
  What new skills and infrastructures do we need?




                            JISC/CNI Workshop 2012
From Liz
•   -citizen science, volunteer computing, collective intelligence approaches to
    problem solving like Innocentive, working with the public, barriers, incentives,
    platforms, public engagement initiatives
•   -data science, data publishing, data-driven research practice, data mining, data-
    driven models and simulations
•   -open data practices, data sharing and associated issues (ethics, privacy, consent,
    confidentiality), legal and licensing issues (IP, FoI, DP) perhaps referencing genome
    data
•   -data quality, research integrity aspects
•   -data citation, peer review of data, data credit, attribution, recognition and reward
    - new approaches (though one of the afternoon sessions will explore metrics)
•   -implications for universities - benefits, challenges, new infrastructure, new
    services, professional support, costs and financial impact of new business models
•   -implications for individuals - benefits, challenges, changing researcher skills, tools,
    methodologies; changes for information professionals, increasing requirement for
    informatics expertise and data scientists
•   - what can institutions and individuals do to realise the potential?


                                     JISC/CNI Workshop 2012

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Open Participatory Science

  • 1. Open Participatory Science Philip E. Bourne pbourne@ucsd.edu JISC/CNI Workshop 2012
  • 2. My Perspective • US centric • Associate Vice Chancellor (Administrative) • Professor (Faculty, Education) • Resource provider (PDB) • OA advocate (PLoS EIC) • Comp Biol / life sciences (Research) JISC/CNI Workshop 2012
  • 3. Future Scenario - Research • At home, prior to leaving for the lab., Jane, syncs her iResearcher with the latest feed from her discovery tool. On the bus she reviews the stream, selecting a video “paper” close to her interest in HIV-1 proteases. The data shows apparent anomalies with her own work. By the time the bus stops she has recomputed the results, proven the anomaly and written a rebuttal and sent it to the open institutional archive for community scrutiny. Later in the day she reviews the associated commentary and notes from the institutional librarian about other on-line resources she should consider to support her argument. After further work that evening she triggers a link to the journal from the institutional archive which at the same time invokes several social media sources raising awareness of the rebuttal 2012 JISC/CNI Workshop
  • 4. Implications • We have discovery informatics tools that work narrow and deeply • The “paper” becomes a seamless source of data and methods to reproduce the experiment • Librarians are the custodians of institutional repositories • Institutional repositories are useful JISC/CNI Workshop 2012
  • 5. Future Scenario - Education • Mary has decided she want to pursue an undergraduate degree with a major in biochemistry. • A review of the higher education portal provides a rank ordered list of institutions with associated costs, virtual course catalog, in person structure, and success ranking. • She chooses the World University campus in Birmingham (WUB) for the depth of its virtual offerings and forward looking group participatory structure and new experimental labs. JISC/CNI Workshop 2012
  • 6. Implications • Basic lectures are virtual learn at your own pace and supplemented by professorial meetings. The open education courseware system that the WUB has access to provides lectures by world leaders who are excellent educators • The group participatory structure has labs where the professor actually works with students • Student ratings drive enrolments and course structure JISC/CNI Workshop 2012
  • 7. Other Drivers of Change: The Story of Meredith • Citizen Science beyond the norm • Made possible by OA • Children heard but not seen • Academic institutions are hierarchical knowledge acquisition is not JISC/CNI Workshop 2012
  • 8. Institutional Response Thus Far • Universities - Limited – Institutional repositories – Libraries – funding issues – My corridor – Research Works Act – UCSF – Faculty speaking • Government - Drivers – NIH/Wellcome etc OA policies – NSF/NIH Data sharing policies JISC/CNI Workshop 2012
  • 9. What is Needed? - Government • Enforcement of data sharing policies • Enforcement of open access policies • Standardization of their own archives • Guaranteed funding of archives (eg PDB) • Mechanisms to support international efforts – science is global; funding is not JISC/CNI Workshop 2012
  • 10. What is Needed? - Institution • Recognition of staff as faculty • Centers of Scholarly Innovation • Push for institutional repository standardization leading to quality improvements, reproducibility etc. • Make institutional repositories more customer valuable and friendly • Better educate Committees on Academic Promotion • Recognize and reward innovation in scholarly communication JISC/CNI Workshop 2012
  • 11. What is Needed? - Faculty • Reward! • Push publishers • Better sharing between those in the know and those not • Exemplars that really show broad value – examples to date: – Google Scholar Profile – Mendeley – Evernote JISC/CNI Workshop 2012
  • 12. One Solution: Use the Traditional Reward System in New Ways The Wikipedia Experiment – Topic Pages • Identify areas of Wikipedia that relate to the journal that are missing of stubs • Develop a Wikipedia page in the sandbox • Have a Topic Page Editor review the page • Publish the copy of record with associated rewards • Release the living version into Wikipedia JISC/CNI Workshop 2012
  • 13. What new skills and infrastructures do we need? • Data journals • App model for science • Publish workflows • Better use of rich media JISC/CNI Workshop 2012
  • 14. Podium Capture Step 1 Mac PC presenter starts PowerPoint Step 4 Slides slides are uploaded Website Step 3 presenter stops recording and initiates upload Step 5 Step 2 presenter starts slides and podcast Step 6 recording on are automatically listener smart phone Sync File synchronized plays back Podcast synchronized presentation Android iPhone Windows Phone 7 JISC/CNI Workshop 2012
  • 15. How do we create meaningful and effective engagement with the key players? • Government – Funding across the stakeholders • Increase the visibility an deliverables of the efforts to date – Force11 JISC/CNI Workshop 2012
  • 16. What are the new roles and responsibilities required? • Librarians need to convince university administrators of the value of a new and emerging role • Need high level administrators responsible for on-line educational content • Need on-site faculty and student training of new technologies JISC/CNI Workshop 2012
  • 17. Workshop Objective • The objective of the event is to identify opportunities for research universities to capitalise on new and emerging forms of scholarly discourse. The outcomes of the event will be increased understanding of the opportunities from changing scholarly communications for universities to build on their core mission, whilst offering technical and thought leaders a chance to explore institutional needs and concerns in order to help shape future innovations. It will contribute to a shared international understanding of the issues facing universities and other stakeholders. Outputs will be a high quality report and record of the proceedings via different media. JISC/CNI Workshop 2012
  • 18. Session Objective • As digital communications present the opportunity for researchers to reach out into the global publics, what does this mean for how we manage and present our scholarly activity? High-profile citizen science initiatives and inter-disciplinary volunteering efforts, enhanced data sharing and re-use and emerging data science agendas are all having a significant impact on domain practice, institutional infrastructure and requirements for new roles and responsibilities. These are accompanied by innovative experimentation with new publishing platforms and novel approaches to assuring research integrity, quality and peer-review. How do we create meaningful and effective engagement with the key players? What are the new roles and responsibilities required? What new skills and infrastructures do we need? JISC/CNI Workshop 2012
  • 19. From Liz • -citizen science, volunteer computing, collective intelligence approaches to problem solving like Innocentive, working with the public, barriers, incentives, platforms, public engagement initiatives • -data science, data publishing, data-driven research practice, data mining, data- driven models and simulations • -open data practices, data sharing and associated issues (ethics, privacy, consent, confidentiality), legal and licensing issues (IP, FoI, DP) perhaps referencing genome data • -data quality, research integrity aspects • -data citation, peer review of data, data credit, attribution, recognition and reward - new approaches (though one of the afternoon sessions will explore metrics) • -implications for universities - benefits, challenges, new infrastructure, new services, professional support, costs and financial impact of new business models • -implications for individuals - benefits, challenges, changing researcher skills, tools, methodologies; changes for information professionals, increasing requirement for informatics expertise and data scientists • - what can institutions and individuals do to realise the potential? JISC/CNI Workshop 2012

Editor's Notes

  1. The UCSF Academic Senate has voted to make electronic versions of current and future scientific articles freely available to the public, eliminating barriers to sharing faculty research. The unanimous vote of the faculty senate makes UCSF the largest scientific institution in the United States to adopt an open access policy and one of the first public universities to do so. Read the full announcement about this important faculty initiative.