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Gene Therapy
The future of cancer
          treatment



     *MD SAQUIB NASIR KHAN
*STUDENT OF BIOINFORMATICS
        BHARATH UNIVERSITY
Cancer is a disease of cells. A single cell moves down the
path toward cancer as the result of a series of
environmentally induced changes to critical genes. The
genes affected in cancer may fall into any of three classes
(Craig, 1995). One class comprises the so-called
―oncogenes‖, the genes that code for proteins that promote
cell proliferation. Another class called tumor suppressors
encode proteins that provide a protective role in the body.
A third class is represented by the gene Bcl-2 and consists
of genes that influ-ence cell viability or cell death. The
significance of the third class is that it suggests that cancer
can result not only from the overgrowth of cells, but also
from a lack of cell death.




1. Introduction Of Cancer
No. of        % of all
       Rank Cause of Death                                                        deaths        deaths
                      1.    Heart Diseases                                         631,636        26.0
               
                      2.    Cancer                                                 559,888        23.1

                      3.    Cerebrovascular diseases                               137,119         5.7
               
                      4.    Chronic lower respiratory diseases                     124,583         5.1
               
                      5.    Accidents (unintentional injuries)                     121,599         5.0
               
                      6.    Diabetes mellitus                                       72,449         3.0
               
                      7.    Alzheimer disease                                       72,432         3.0
               
                      8.    Influenza & pneumonia                                  56,326          2.3
               
               9.      Nephritis*                                                    45,344         1.9
US Mortality, 2006
                      10. Septicemia                                                              34,234         1.4
     *Includes nephrotic syndrome and nephrosis.
     Source: US Mortality Data 2006, National Center for Health Statistics, Centers for Disease Control and Prevention,
     2009.
Japan, year 2000
Annual deaths from smoking


• Smoking kills about 113,000 people a year in
Japan
   About 33,000 die in middle age from smoking
   Many of those killed in middle age would have lived
    on for 10, 20, 30 or more good years
   About 22 years of life are lost, on average, by those
    killed in middle age by smoking



www.deathsfromsmoking.net
   (According to prevantionweb.net)

   No of events:157
   No of people killed:8,568
   Average killed per year:276
   No of people affected:3,361,979
   Average affected per year:108,451




IN JAPAN NATURAL DISASTER
hereditary cancers

Difficulties in studying hereditary cancers
*Humans have small families
*Generation times are long
*Highly mobile; hard to keep in touch
*Studies require cooperation
   **Consent for tests
   **Correct information on family members
*Cancers are different diseases
*Cancers can occur at random; hard to find affected families
*More than one gene must be altered to get cancer
 cellular and nuclear pleomorphism,
 they exhibit abnormal mitoses and
  chromosomal abnormalities.
 malignant transformation
 Hyperplasia
 Genome instability
 Incresed Angiogenisis
 Incresed motility



Why its hard to identify cancer cell
Cancer is disease of
                             Genes
*Cancer is a genetic disease
−Not monogenic like MD or CF, but multigenic
*Cancer is caused by mutations in somatic cells
*Cancer can be caused by mutagens, chemicals that damage
DNA, or viruses
*Cancer is caused by an accumulation of mutations in different
genes in a single cell
*Cancer is caused by altered expression of genes or by
accumulation of mutations in a single cell
Detection of cancers
1.gene tests available:
      BRCA1: breast and ovarian cancer
      BRCA2: breast cancer
      p53: Li-Fraumeni syndrome
      APC: FAP colon cancer
      MLH1, MSH2 and other DNA repair genes: HNPCC
colon cancer

2. Protein and enzyme tests
3. X-rays: Expose region to low dose X-
 rays, obtain image of more dense
 regions, including bones and the
 accumulation of minerals at tumor sites.

 ◦ improvements: minimize X-ray dose;
 ◦ standardize procedures and training to improve
   reliability;
 ◦ use high contrast dyes to localize regions

4.CT or CAT scan--computed tomography--
 computer analysis of scanning X-ray images




Cont…..
5.MRI--magnetic resonance imaging--
 computer analysis of images that does
 not involve X-rays. Involves radiowaves
 and deflection by a powerful magnet;
 useful for tumors surrounded by bone.

6.ultrasound--lower cost, lower resolution
 imaging. Widely used in breast cancer
 and prostate cancer to clarify results of
 initial tests.


Cont….
 replacement gene therapy
 knockout gene therapy
 suicide gene therapy
 immunomodulatory gene therapy




Gene therapy of Cancer
   Replacement Gene Therapy=method
    for replacing a mutated or missing gene
    (usually a tumor suppressor gene) that
    serves to keep cell growth and division
    under control with a "healthy" (normal)
    copy of that gene.




Replacement Gene Therapy
   Knockout gene therapy primarily targets
    the products of oncogenes in an effort to
    inactivate them and reduce cellular
    proliferation. Several approaches are being
    tried:

   delivering a mutant oncogene that acts in a
    dominant manner to negate the effects of the
    cancer-causing oncogene
   inhibiting translation of the oncogene by
    gene therapy


Knockout gene therapy
   Suicide gene therapy—involves the
    transduction of a gene that transforms a
    nontoxic form of a drug (that is, a "pro-
    drug") into a toxic substance.




Suicide gene therapy
   Immunomodulatory gene therapy--is a method to induce
    cellular immune responses to metastatic tumors. The strategy
    involves injecting into the skin of a patient a suspension of
    irradiated tumor cells that have been transduced with a cytokine
    gene to stimulate a systemic immune response against tumor-
    specific
   antigens—in effect, vaccinating the patient against that specific
    cancer.

   The basic idea of immunotherapy is to:

 modify tumor cells outside the body with a cytokine gene
 transplant the cytokine-gene modified cells back into the patient
  (after the cells have been irradiated to prevent further cell
  division)
 let the host's system create an antitumor immune response




Immunomodulatory gene therapy-
   Nanomedicine is the medical application
    of nanotechnology .Nanomedicine ranges
    from the medical applications
    of nanomaterials,to nanoelectronic biosensor
    s, and even possible future applications
    of molecular nanotechnology. Current
    problems for nanomedicine involve
    understanding the issues related
    to toxicity and environmental
    impact of nanoscale materials. One
    nanometer is one-millionth of a millimeter.



Nanomedicine
Nanomedicin
                          e




Nanomedicine treatment pathway in
blood stream
Improving Cancer Treatment
   Traditional Treatment          Nanotechnology Treatment

     Drugs
                         Toxins            Nanodevices

                                  Cancer
Cancer                            cells                  Toxins
cells




    Noncancerous cells               Noncancerous cells

Dead                              Dead
cancer                            cancer
cells                             cells




    Dead noncancerous                Intact noncancerous
           cells                             cells
Polymeric nanoparticles are shown as representative
nanocarriers (circles). Passive tissue targeting is achieved
by extravasation of nanoparticles (NP) through increased
permeability of the tumor vasculature and ineffective
lymphatic drainage (EPR effect).

Active cellular targeting (inset)
can be achieved by
functionalizing the
surface of NP with
ligands that promote
cell-specific recognition
and binding. The nanoparticles can (i) release their contents in close
proximity to the target cells; (ii) attach to the membrane of the cell and act
as an extracellular sustained-release drug depot; or (iii) internalize into the
cell.

    Mechanisms by which
    Nanocarriers Can Deliver Drugs to
    Tumors
Nanotechnology Based Drug Delivery
Systems for Cancer Therapy




Schematics - Reproduced from Sahoo and Labhasetwar, 2003 with kind permission from Drug Discovery
Today.
http://www.cancer-therapy.org/CT3A/HTML/13.%20Orive%20et%20al,%20131-138%20.html 2005
   ABI1, ABL2, ACSL6, AF1Q, AF5Q31 , AKT1, ARNT, ASPSCR1, ATF1
    , ATIC, BCL10, BFHD, BIRC3, BMPR1A, BTG1, CBFA2T1, CBFA2T3,
     CBFB, CCND1, CDC2, CDK4,CHIC2, CHN1, COPEB, COX6C, CTNN
    B1, CYLD, DDB2, DDIT3, DEK, Eif4a, EIF4A2, EPS15, ERCC2, ERC
    C3, ERCC5, ERG, ETV4, ETV6, EWSR1, EXT1, EXT2, FANCC, FANC
    G, FGFR1OP,FGFR3, FH, FIP1L1, FUS, GAS7, GATA1, GMPS, GOLG
    A5, GPC
    (gene), GPHN, HIST1H4I, HRAS, HSPCA, IL21R, IIRF4, KRAS2, LA
    SP1, LCP1, LHFP, LMO2, LYL1, MADH4, MEIS1, MLF1,MLH1, MLLT3
    , MLLT6, MNAT1, MSF, MSH2, MSN, MUTYH, MYC, NCOA4, NF2, N
    PM1, NRAS, PAX8, PCBD, PDGFB, PHOX2B, PIM1, PLK2, PNUTL1,
    POU2F1, PPARG, PRCC, PRKACB,PRKAR1A, PTEN, PTPN11, RABEP
    1, RAD51L1, RAP1GDS1, RARA, RB1, RET, RHOH, RPL22, SBDS, S
    DHB, SEPTIN6, SET, SH3GL1, SS18L1, SSX1, SSX2, SSX4, STAT3,
     TAF15, TCF12,TCL1A, TFE3, TFEB, TFG, TFPT, TFRC, TNFRSF6, TP
    53, TPM3, TPM4, TRIP11, VHL, WAS, WT1, ZNF198, ZNF278, ZNF
    384, ZNFN1A1




Genes involve in cancer treatment
   black raspberry are
    blueberries, blackberries, strawberries, and
    cranberries, These berries are high invitamin
    C, fiber, and ellagic acid, which can prevent skin
    cancer.
   Tenderstem, help prevent stomach, colon and
    lung cancers.
   Broccoli ,Some research has shown that a
    serving of broccoli every day can reduce the risk
    of colon cancer by almost 50 per cent.
   Cabbage ,Some scientists think cabbage is
    particularly good at protecting against colon
    cancer and breast cancer.



Natural support for cancer
 Watermelon ,Tomatoes, watermelons, guavas and
  grapefruit are rich in lycopene. This is a fat-soluble
  nutrient which appears to have a powerful action on
  the immune system by producing antioxidant activity
  in the body.
 Grapes ,An anti-fungal agent found in grapes my
  help to protect against cancer, according to
  researchers from De Montfort University in Leicester.
  Resveratrol is a molecule which helps grapes and
  other crops avoid fungus.
 Carrot ,help to prevent retina cancer , which is vary
  rear cancer
 Lemon is use to cure against Neuroblastoma




Cont……
Video Links
   Cancer Detection with Gold Nanoparticles – May
    27, 2007
    http://www.youtube.com/watch?v=uyhxRIvw_cY&feature=related

   Nanoparticle Carrying Capacity – March 27, 2008
    http://www.youtube.com/watch?v=TVch-fDzet8&feature=related

   Nanotechnology In Drug Delivery - March 16, 2008
    http://www.youtube.com/watch?v=ybK5TIGNNFA&NR=1
   Nanomedicine for Brain Tumors – July 3, 2008
    http://www.youtube.com/watch?v=gJgmi-D12pk

   Nanomedicine Cancer Drug Delivery from
    PlayGenSeriousGames – sponsored by Wellcome
    Trust http://www.youtube.com/watch?v=tPAO0WHoaX0 (1st)
    February 11, 2008
    http://www.youtube.com/watch?v=DEcof9HlUvk (2nd) February
    11, 2008       http://www.nanomission.org/ The Game
    Site
      Play
cancer
cancer

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cancer

  • 1.
  • 2.
  • 3. Gene Therapy The future of cancer treatment *MD SAQUIB NASIR KHAN *STUDENT OF BIOINFORMATICS BHARATH UNIVERSITY
  • 4. Cancer is a disease of cells. A single cell moves down the path toward cancer as the result of a series of environmentally induced changes to critical genes. The genes affected in cancer may fall into any of three classes (Craig, 1995). One class comprises the so-called ―oncogenes‖, the genes that code for proteins that promote cell proliferation. Another class called tumor suppressors encode proteins that provide a protective role in the body. A third class is represented by the gene Bcl-2 and consists of genes that influ-ence cell viability or cell death. The significance of the third class is that it suggests that cancer can result not only from the overgrowth of cells, but also from a lack of cell death. 1. Introduction Of Cancer
  • 5.
  • 6. No. of % of all Rank Cause of Death deaths deaths  1. Heart Diseases 631,636 26.0   2. Cancer 559,888 23.1  3. Cerebrovascular diseases 137,119 5.7   4. Chronic lower respiratory diseases 124,583 5.1   5. Accidents (unintentional injuries) 121,599 5.0   6. Diabetes mellitus 72,449 3.0   7. Alzheimer disease 72,432 3.0   8. Influenza & pneumonia 56,326 2.3  9. Nephritis* 45,344 1.9 US Mortality, 2006  10. Septicemia 34,234 1.4 *Includes nephrotic syndrome and nephrosis. Source: US Mortality Data 2006, National Center for Health Statistics, Centers for Disease Control and Prevention, 2009.
  • 7. Japan, year 2000 Annual deaths from smoking • Smoking kills about 113,000 people a year in Japan  About 33,000 die in middle age from smoking  Many of those killed in middle age would have lived on for 10, 20, 30 or more good years  About 22 years of life are lost, on average, by those killed in middle age by smoking www.deathsfromsmoking.net
  • 8. (According to prevantionweb.net)  No of events:157  No of people killed:8,568  Average killed per year:276  No of people affected:3,361,979  Average affected per year:108,451 IN JAPAN NATURAL DISASTER
  • 9.
  • 10. hereditary cancers Difficulties in studying hereditary cancers *Humans have small families *Generation times are long *Highly mobile; hard to keep in touch *Studies require cooperation **Consent for tests **Correct information on family members *Cancers are different diseases *Cancers can occur at random; hard to find affected families *More than one gene must be altered to get cancer
  • 11.  cellular and nuclear pleomorphism,  they exhibit abnormal mitoses and chromosomal abnormalities.  malignant transformation  Hyperplasia  Genome instability  Incresed Angiogenisis  Incresed motility Why its hard to identify cancer cell
  • 12. Cancer is disease of Genes *Cancer is a genetic disease −Not monogenic like MD or CF, but multigenic *Cancer is caused by mutations in somatic cells *Cancer can be caused by mutagens, chemicals that damage DNA, or viruses *Cancer is caused by an accumulation of mutations in different genes in a single cell *Cancer is caused by altered expression of genes or by accumulation of mutations in a single cell
  • 13. Detection of cancers 1.gene tests available: BRCA1: breast and ovarian cancer BRCA2: breast cancer p53: Li-Fraumeni syndrome APC: FAP colon cancer MLH1, MSH2 and other DNA repair genes: HNPCC colon cancer 2. Protein and enzyme tests
  • 14. 3. X-rays: Expose region to low dose X- rays, obtain image of more dense regions, including bones and the accumulation of minerals at tumor sites. ◦ improvements: minimize X-ray dose; ◦ standardize procedures and training to improve reliability; ◦ use high contrast dyes to localize regions 4.CT or CAT scan--computed tomography-- computer analysis of scanning X-ray images Cont…..
  • 15. 5.MRI--magnetic resonance imaging-- computer analysis of images that does not involve X-rays. Involves radiowaves and deflection by a powerful magnet; useful for tumors surrounded by bone. 6.ultrasound--lower cost, lower resolution imaging. Widely used in breast cancer and prostate cancer to clarify results of initial tests. Cont….
  • 16.  replacement gene therapy  knockout gene therapy  suicide gene therapy  immunomodulatory gene therapy Gene therapy of Cancer
  • 17. Replacement Gene Therapy=method for replacing a mutated or missing gene (usually a tumor suppressor gene) that serves to keep cell growth and division under control with a "healthy" (normal) copy of that gene. Replacement Gene Therapy
  • 18. Knockout gene therapy primarily targets the products of oncogenes in an effort to inactivate them and reduce cellular proliferation. Several approaches are being tried:   delivering a mutant oncogene that acts in a dominant manner to negate the effects of the cancer-causing oncogene  inhibiting translation of the oncogene by gene therapy Knockout gene therapy
  • 19. Suicide gene therapy—involves the transduction of a gene that transforms a nontoxic form of a drug (that is, a "pro- drug") into a toxic substance. Suicide gene therapy
  • 20. Immunomodulatory gene therapy--is a method to induce cellular immune responses to metastatic tumors. The strategy involves injecting into the skin of a patient a suspension of irradiated tumor cells that have been transduced with a cytokine gene to stimulate a systemic immune response against tumor- specific  antigens—in effect, vaccinating the patient against that specific cancer.   The basic idea of immunotherapy is to:   modify tumor cells outside the body with a cytokine gene  transplant the cytokine-gene modified cells back into the patient (after the cells have been irradiated to prevent further cell division)  let the host's system create an antitumor immune response Immunomodulatory gene therapy-
  • 21. Nanomedicine is the medical application of nanotechnology .Nanomedicine ranges from the medical applications of nanomaterials,to nanoelectronic biosensor s, and even possible future applications of molecular nanotechnology. Current problems for nanomedicine involve understanding the issues related to toxicity and environmental impact of nanoscale materials. One nanometer is one-millionth of a millimeter. Nanomedicine
  • 22. Nanomedicin e Nanomedicine treatment pathway in blood stream
  • 23. Improving Cancer Treatment Traditional Treatment Nanotechnology Treatment Drugs Toxins Nanodevices Cancer Cancer cells Toxins cells Noncancerous cells Noncancerous cells Dead Dead cancer cancer cells cells Dead noncancerous Intact noncancerous cells cells
  • 24. Polymeric nanoparticles are shown as representative nanocarriers (circles). Passive tissue targeting is achieved by extravasation of nanoparticles (NP) through increased permeability of the tumor vasculature and ineffective lymphatic drainage (EPR effect). Active cellular targeting (inset) can be achieved by functionalizing the surface of NP with ligands that promote cell-specific recognition and binding. The nanoparticles can (i) release their contents in close proximity to the target cells; (ii) attach to the membrane of the cell and act as an extracellular sustained-release drug depot; or (iii) internalize into the cell. Mechanisms by which Nanocarriers Can Deliver Drugs to Tumors
  • 25. Nanotechnology Based Drug Delivery Systems for Cancer Therapy Schematics - Reproduced from Sahoo and Labhasetwar, 2003 with kind permission from Drug Discovery Today. http://www.cancer-therapy.org/CT3A/HTML/13.%20Orive%20et%20al,%20131-138%20.html 2005
  • 26. ABI1, ABL2, ACSL6, AF1Q, AF5Q31 , AKT1, ARNT, ASPSCR1, ATF1 , ATIC, BCL10, BFHD, BIRC3, BMPR1A, BTG1, CBFA2T1, CBFA2T3, CBFB, CCND1, CDC2, CDK4,CHIC2, CHN1, COPEB, COX6C, CTNN B1, CYLD, DDB2, DDIT3, DEK, Eif4a, EIF4A2, EPS15, ERCC2, ERC C3, ERCC5, ERG, ETV4, ETV6, EWSR1, EXT1, EXT2, FANCC, FANC G, FGFR1OP,FGFR3, FH, FIP1L1, FUS, GAS7, GATA1, GMPS, GOLG A5, GPC (gene), GPHN, HIST1H4I, HRAS, HSPCA, IL21R, IIRF4, KRAS2, LA SP1, LCP1, LHFP, LMO2, LYL1, MADH4, MEIS1, MLF1,MLH1, MLLT3 , MLLT6, MNAT1, MSF, MSH2, MSN, MUTYH, MYC, NCOA4, NF2, N PM1, NRAS, PAX8, PCBD, PDGFB, PHOX2B, PIM1, PLK2, PNUTL1, POU2F1, PPARG, PRCC, PRKACB,PRKAR1A, PTEN, PTPN11, RABEP 1, RAD51L1, RAP1GDS1, RARA, RB1, RET, RHOH, RPL22, SBDS, S DHB, SEPTIN6, SET, SH3GL1, SS18L1, SSX1, SSX2, SSX4, STAT3, TAF15, TCF12,TCL1A, TFE3, TFEB, TFG, TFPT, TFRC, TNFRSF6, TP 53, TPM3, TPM4, TRIP11, VHL, WAS, WT1, ZNF198, ZNF278, ZNF 384, ZNFN1A1 Genes involve in cancer treatment
  • 27. black raspberry are blueberries, blackberries, strawberries, and cranberries, These berries are high invitamin C, fiber, and ellagic acid, which can prevent skin cancer.  Tenderstem, help prevent stomach, colon and lung cancers.  Broccoli ,Some research has shown that a serving of broccoli every day can reduce the risk of colon cancer by almost 50 per cent.  Cabbage ,Some scientists think cabbage is particularly good at protecting against colon cancer and breast cancer. Natural support for cancer
  • 28.  Watermelon ,Tomatoes, watermelons, guavas and grapefruit are rich in lycopene. This is a fat-soluble nutrient which appears to have a powerful action on the immune system by producing antioxidant activity in the body.  Grapes ,An anti-fungal agent found in grapes my help to protect against cancer, according to researchers from De Montfort University in Leicester. Resveratrol is a molecule which helps grapes and other crops avoid fungus.  Carrot ,help to prevent retina cancer , which is vary rear cancer  Lemon is use to cure against Neuroblastoma Cont……
  • 29. Video Links  Cancer Detection with Gold Nanoparticles – May 27, 2007 http://www.youtube.com/watch?v=uyhxRIvw_cY&feature=related  Nanoparticle Carrying Capacity – March 27, 2008 http://www.youtube.com/watch?v=TVch-fDzet8&feature=related  Nanotechnology In Drug Delivery - March 16, 2008 http://www.youtube.com/watch?v=ybK5TIGNNFA&NR=1  Nanomedicine for Brain Tumors – July 3, 2008 http://www.youtube.com/watch?v=gJgmi-D12pk  Nanomedicine Cancer Drug Delivery from PlayGenSeriousGames – sponsored by Wellcome Trust http://www.youtube.com/watch?v=tPAO0WHoaX0 (1st) February 11, 2008 http://www.youtube.com/watch?v=DEcof9HlUvk (2nd) February 11, 2008 http://www.nanomission.org/ The Game Site Play