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“…sparked by just the right
                 combination of physical events
                 & chemical processes…”




Origin of Life




 AP Biology                            2007-2008
Bacteria Archae- Protista Plantae Fungi   Animalia
                          0    Cenozoic                                                       bacteria
                               Mesozoic                    Colonization of land
                               Paleozoic                   by animals
                        500
                                                           Appearance of animals
                                                           and land plants
                        1000                               First multicellular
                               PROTEROZOIC




                                                           organisms

                        1500                               Oldest definite fossils
Millions of years ago




                                                           of eukaryotes
                                             PRECAMBRIAN




                        2000                               Appearance of oxygen
                                                           in atmosphere

                        2500                               Oldest definite fossils
                                                           of prokaryotes
                               ARCHEAN




                        3000
                                                                                          The evolutionary tree of
                        3500                                                              life can be documented
                                                           Molten-hot surface of
                                                           earth becomes cooler
                                                                                          with evidence.
                        4000
                                                                                          The Origin of Life on
           AP Biology
                        4500                               Formation of earth             Earth is another story…
What is Life?
      First we have to define LIFE…
            organized as cells
            respond to stimuli
            regulate internal processes
               homeostasis
            use energy to grow
               metabolism
            develop
               change & mature
               within lifetime
            reproduce
               heredity
                   DNA / RNA
               adaptation & evolution
AP Biology
The Origin of Life is Hypothesis
      Special Creation
             Was life created by a
              supernatural or divine force?
             not testable
      Extraterrestrial Origin
             Was the original source of
              organic (carbon) materials
              comets & meteorites striking
              early Earth?
             testable
      Spontaneous Abiotic Origin
             Did life evolve spontaneously
              from inorganic molecules?
AP Biology   testable
Conditions on early Earth
     Reducing atmosphere
            water vapor (H2O), CO2, N2, NOx, H2, NH3,
             CH4, H2S
          lots of available H & its electron
          no free oxygen
                                      low O2 =
                                         organic molecules
      Energy source                     do not breakdown
                                         as quickly
            lightning, UV radiation,
             volcanic
                        What’s missing
                          from that
                        atmosphere?

AP Biology
Electrodes discharge
                                                          sparks
                                                  (lightning simulation)
   Origin of Organic Molecules
    Abiotic synthesis
        1920                       Water vapor
                                                              CH4

         Oparin & Haldane                                         H2
                                                            NH3
         propose reducing            Mixture of gases
         atmosphere                  ("primitive               Condenser
                                     atmosphere")
         hypothesis
        1953                                                       Water

         Miller & Urey
         test hypothesis
              formed organic
                                                           Condensed
              compounds                                    liquid with
                amino acids                               complex,
                                                           organic
                adenine        Heated water               molecules
AP Biology                       ("ocean")
Stanley Miller

                                     University of Chicago


       produced
    -amino acids
  -hydrocarbons
-nitrogen bases
 -other organics


              It’s ALIVE!
 AP Biology
Origin of Cells (Protobionts)
       Bubbles → separate inside from outside
                → metabolism & reproduction




  Bubbles…
Tiny bubbles…




 AP Biology
Dawn of natural selection
   Origin of Genetics
    RNA is likely first genetic material
        multi-functional
        codes information

              self-replicating molecule
              makes inheritance possible
              natural selection & evolution
            enzyme functions
              ribozymes
              replication
        regulatory molecule
        transport molecule

              tRNA & mRNA
AP Biology
Key Events in Origin of Life
     Key events in
        evolutionary
        history of life on
        Earth
            life originated
             3.5–4.0 bya




AP Biology
Prokaryotes
   Prokaryotes dominated life
      on Earth from 3.5–2.0 bya


       3.5 billion year old
        fossil of bacteria        modern bacteria




                                      chains of one-celled
AP Biology                               cyanobacteria
Lynn Margulis

   Stromatolites
    Fossilized mats of
    prokaryotes resemble
    modern microbial
    colonies




AP Biology
Oxygen atmosphere
     Oxygen begins to accumulate 2.7 bya
            reducing → oxidizing atmosphere
               evidence in banded iron in rocks = rusting
               makes aerobic respiration possible
            photosynthetic bacteria (blue-green algae)




AP Biology
~2 bya
    First Eukaryotes
      Development of internal membranes
             create internal micro-environments
             advantage: specialization = increase efficiency
                natural selection!
                                                               nuclear envelope
                                              endoplasmic
infolding of the      plasma                  reticulum (ER)
plasma membrane       membrane
                                                                      nucleus




  DNA
                    cell wall                 plasma
                                              membrane
      Prokaryotic               Prokaryotic                Eukaryotic
         cell                   ancestor of                   cell
                                eukaryotic
 AP Biology                        cells
Endosymbiosis
   Evolution of eukaryotes
         origin of mitochondria
         engulfed aerobic bacteria, but
          did not digest them
         mutually beneficial relationship
            natural selection!

       internal membrane
                                  aerobic bacterium          mitochondrion
             system




                                             Endosymbiosis




   Ancestral                                              Eukaryotic cell
AP Biology
eukaryotic cell                                        with mitochondrion
Eukaryotic
   Endosymbiosis                                   cell with
                                                mitochondrion
     Evolution of eukaryotes
           origin of chloroplasts
           engulfed photosynthetic bacteria,
            but did not digest them
           mutually beneficial relationship
              natural selection!
                               photosynthetic
                                  bacterium



  chloroplast

                              Endosymbiosis       mitochondrion

             Eukaryotic cell with
         chloroplast & mitochondrion
AP Biology
Theory of Endosymbiosis
    Evidence
            structural
               mitochondria & chloroplasts
               resemble bacterial structure
            genetic                              Lynn Margulis
               mitochondria & chloroplasts
               have their own circular DNA, like bacteria
            functional
               mitochondria & chloroplasts
                move freely within the cell
               mitochondria & chloroplasts
                reproduce independently
                from the cell
AP Biology
Cambrian explosion
    Diversification of Animals
            within 10–20 million years most of the major
             phyla of animals appear in fossil record

543 mya




AP Biology
AP Biology
AP Biology
Diversity of life & periods of mass extinction




             Cambrian
             explosion




AP Biology
Cretaceous extinction
             The Chicxulub impact crater in the
             Caribbean Sea near the Yucatan
             Peninsula of Mexico indicates an
             asteroid or comet struck the earth and
             changed conditions 65 million years ago




AP Biology
Early mammal evolution
     125 mya mammals
        began to radiate
        out & fill niches




AP Biology
Classifying Life
    Molecular data
       challenges 5 Kingdoms
              Monera was too diverse
                 2 distinct lineages of prokaryotes
              Protists are still too diverse
                 not yet sorted out




AP Biology
3 Domain system
     Domains = “Super” Kingdoms
          Bacteria
          Archaea

              extremophiles = live in extreme environments
                 methanogens
                 halogens
                 thermophiles
            Eukarya
              eukaryotes
                 protists
                 fungi
                 plants
                 animals
AP Biology
Kingdom        Kingdom       Kingdom
     Bacteria    Archaebacteria   Protista




       Kingdom     Kingdom        Kingdom
         Fungi
AP Biology          Plantae       Animalia
Any Questions??
            Is there life elsewhere?
         Does it look like life on Earth?




AP Biology                             2008-2009

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09 ch04originoflife2008

  • 1. “…sparked by just the right combination of physical events & chemical processes…” Origin of Life AP Biology 2007-2008
  • 2. Bacteria Archae- Protista Plantae Fungi Animalia 0 Cenozoic bacteria Mesozoic Colonization of land Paleozoic by animals 500 Appearance of animals and land plants 1000 First multicellular PROTEROZOIC organisms 1500 Oldest definite fossils Millions of years ago of eukaryotes PRECAMBRIAN 2000 Appearance of oxygen in atmosphere 2500 Oldest definite fossils of prokaryotes ARCHEAN 3000 The evolutionary tree of 3500 life can be documented Molten-hot surface of earth becomes cooler with evidence. 4000 The Origin of Life on AP Biology 4500 Formation of earth Earth is another story…
  • 3. What is Life?  First we have to define LIFE…  organized as cells  respond to stimuli  regulate internal processes  homeostasis  use energy to grow  metabolism  develop  change & mature within lifetime  reproduce  heredity  DNA / RNA  adaptation & evolution AP Biology
  • 4. The Origin of Life is Hypothesis  Special Creation  Was life created by a supernatural or divine force?  not testable  Extraterrestrial Origin  Was the original source of organic (carbon) materials comets & meteorites striking early Earth?  testable  Spontaneous Abiotic Origin  Did life evolve spontaneously from inorganic molecules? AP Biology testable
  • 5. Conditions on early Earth  Reducing atmosphere  water vapor (H2O), CO2, N2, NOx, H2, NH3, CH4, H2S  lots of available H & its electron  no free oxygen low O2 = organic molecules  Energy source do not breakdown as quickly  lightning, UV radiation, volcanic What’s missing from that atmosphere? AP Biology
  • 6. Electrodes discharge sparks (lightning simulation) Origin of Organic Molecules  Abiotic synthesis  1920 Water vapor CH4 Oparin & Haldane H2 NH3 propose reducing Mixture of gases atmosphere ("primitive Condenser atmosphere") hypothesis  1953 Water Miller & Urey test hypothesis  formed organic Condensed compounds liquid with  amino acids complex, organic  adenine Heated water molecules AP Biology ("ocean")
  • 7. Stanley Miller University of Chicago produced -amino acids -hydrocarbons -nitrogen bases -other organics It’s ALIVE! AP Biology
  • 8. Origin of Cells (Protobionts)  Bubbles → separate inside from outside → metabolism & reproduction Bubbles… Tiny bubbles… AP Biology
  • 9. Dawn of natural selection Origin of Genetics  RNA is likely first genetic material  multi-functional  codes information  self-replicating molecule  makes inheritance possible  natural selection & evolution  enzyme functions  ribozymes  replication  regulatory molecule  transport molecule  tRNA & mRNA AP Biology
  • 10. Key Events in Origin of Life  Key events in evolutionary history of life on Earth  life originated 3.5–4.0 bya AP Biology
  • 11. Prokaryotes  Prokaryotes dominated life on Earth from 3.5–2.0 bya 3.5 billion year old fossil of bacteria modern bacteria chains of one-celled AP Biology cyanobacteria
  • 12. Lynn Margulis Stromatolites Fossilized mats of prokaryotes resemble modern microbial colonies AP Biology
  • 13. Oxygen atmosphere  Oxygen begins to accumulate 2.7 bya  reducing → oxidizing atmosphere  evidence in banded iron in rocks = rusting  makes aerobic respiration possible  photosynthetic bacteria (blue-green algae) AP Biology
  • 14. ~2 bya First Eukaryotes  Development of internal membranes  create internal micro-environments  advantage: specialization = increase efficiency  natural selection! nuclear envelope endoplasmic infolding of the plasma reticulum (ER) plasma membrane membrane nucleus DNA cell wall plasma membrane Prokaryotic Prokaryotic Eukaryotic cell ancestor of cell eukaryotic AP Biology cells
  • 15. Endosymbiosis  Evolution of eukaryotes  origin of mitochondria  engulfed aerobic bacteria, but did not digest them  mutually beneficial relationship  natural selection! internal membrane aerobic bacterium mitochondrion system Endosymbiosis Ancestral Eukaryotic cell AP Biology eukaryotic cell with mitochondrion
  • 16. Eukaryotic Endosymbiosis cell with mitochondrion  Evolution of eukaryotes  origin of chloroplasts  engulfed photosynthetic bacteria, but did not digest them  mutually beneficial relationship  natural selection! photosynthetic bacterium chloroplast Endosymbiosis mitochondrion Eukaryotic cell with chloroplast & mitochondrion AP Biology
  • 17. Theory of Endosymbiosis  Evidence  structural  mitochondria & chloroplasts resemble bacterial structure  genetic Lynn Margulis  mitochondria & chloroplasts have their own circular DNA, like bacteria  functional  mitochondria & chloroplasts move freely within the cell  mitochondria & chloroplasts reproduce independently from the cell AP Biology
  • 18. Cambrian explosion  Diversification of Animals  within 10–20 million years most of the major phyla of animals appear in fossil record 543 mya AP Biology
  • 21. Diversity of life & periods of mass extinction Cambrian explosion AP Biology
  • 22. Cretaceous extinction The Chicxulub impact crater in the Caribbean Sea near the Yucatan Peninsula of Mexico indicates an asteroid or comet struck the earth and changed conditions 65 million years ago AP Biology
  • 23. Early mammal evolution  125 mya mammals began to radiate out & fill niches AP Biology
  • 24. Classifying Life  Molecular data challenges 5 Kingdoms  Monera was too diverse  2 distinct lineages of prokaryotes  Protists are still too diverse  not yet sorted out AP Biology
  • 25. 3 Domain system  Domains = “Super” Kingdoms  Bacteria  Archaea  extremophiles = live in extreme environments  methanogens  halogens  thermophiles  Eukarya  eukaryotes  protists  fungi  plants  animals AP Biology
  • 26. Kingdom Kingdom Kingdom Bacteria Archaebacteria Protista Kingdom Kingdom Kingdom Fungi AP Biology Plantae Animalia
  • 27. Any Questions?? Is there life elsewhere? Does it look like life on Earth? AP Biology 2008-2009

Notes de l'éditeur

  1. It is unclear whether young Earth’s atmosphere contained enough methane and ammonia to be reducing. Growing evidence suggests that the early atmosphere was made up primarily of nitrogen and carbon dioxide and was neither reducing nor oxidizing (electron–removing). Miller–Urey–type experiments using such atmospheres have not produced organic molecules. Still, it is likely that small “pockets” of the early atmosphere—perhaps near volcanic openings—were reducing. Instead of forming in the atmosphere, the first organic compounds on Earth may have been synthesized near submerged volcanoes and deep–sea vents—weak points in Earth’s crust where hot water and minerals gush into the ocean.
  2. Life is defined partly by two properties: accurate replication and metabolism. Neither property can exist without the other. Self–replicating molecules and a metabolism–like source of the building blocks must have appeared together. How did that happen? The necessary conditions for life may have been met by protobionts, aggregates of abiotically produced molecules surrounded by a membrane or membrane–like structure. Protobionts exhibit some of the properties associated with life, including simple reproduction and metabolism, as well as the maintenance of an internal chemical environment different from that of their surroundings. Laboratory experiments demonstrate that protobionts could have formed spontaneously from abiotically produced organic compounds. For example, small membrane–bounded droplets called liposomes can form when lipids or other organic molecules are added to water.
  3. Why RNA? RNA molecules are important catalysts in modern cells. Modern cells use RNA catalysts, called ribozymes, to remove introns from RNA. Ribozymes also help catalyze the synthesis of new RNA, notably rRNA, tRNA, and mRNA. Thus, RNA is autocatalytic, and in the prebiotic world, before there were enzymes (proteins) or DNA, RNA molecules may have been fully capable of ribozyme-catalyzed replication.
  4. Electron Transport Systems The chemiosmotic mechanism of ATP synthesis, in which a complex set of membrane–bound proteins pass electrons to reducible electron acceptors with the generation of ATP from ADP, is common to all three domains of life—Bacteria, Archaea, and Eukarya. There is strong evidence that this electron transport mechanism actually originated in organisms that lived before the last common ancestor of all present–day life. The earliest of these electron transport systems likely evolved before there was any free oxygen in the environment and before the appearance of photosynthesis; the organisms that used it would have required a plentiful supply of energy–rich compounds such as molecular hydrogen, methane, and hydrogen sulfide. A great challenge facing scientists studying the origin of life is to determine the steps by which this electron transport mechanism originated, and how important early versions of it might have been in the emergence of the first cells. So considerable metabolic diversity among prokaryotes living in various environments had already evolved more than 3 billion years ago. Most subsequent evolution has been more structural than metabolic.
  5. Diversity of life and periods of mass extinction. The fossil record of terrestrial and marine organisms reveals a general increase in the diversity of organisms over time (red line and right vertical axis). Mass extinctions, represented by peaks in the extinction rate (blue line and left vertical axis) interrupted the buildup of diversity. The extinction rate is the estimated percentage of extant taxonomic families that died out in each period of geologic time. The fossil record chronicles a number of occasions when global environmental changes were so rapid and disruptive that a majority of species were swept away Such mass extinctions are known primarily from the decimation of hard–bodied animals that lived in shallow seas, the organisms for which the fossil record is most complete. Two mass extinctions—the Permian and the Cretaceous—have received the most attention. The Permian mass extinction, which defines the boundary between the Paleozoic and Mesozoic eras, claimed about 96% of marine animal species. Terrestrial life was also affected. For example, 8 out of 27 orders of insects were wiped out. This mass extinction occurred in less than 5 million years, possibly much less—an instant in the context of geologic time. The Cretaceous mass extinction of 65 million years ago, which marks the boundary between the Mesozoic and Cenozoic eras, doomed more than half of all marine species and exterminated many families of terrestrial plants and animals, including most of the dinosaurs.
  6. Trauma for Earth and its Cretaceous life. One clue to a possible cause of the Cretaceous mass extinction is a thin layer of clay enriched in iridium that separates sediments from the Mesozoic and Cenozoic eras. Iridium is an element very rare on Earth but common in many of the meteorites and other extraterrestrial objects that occasionally fall to Earth. Walter and Luis Alvarez and their colleagues at the University of California proposed that this clay is fallout from a huge cloud of debris that billowed into the atmosphere when an asteroid or a large comet collided with Earth. This cloud would have blocked sunlight and severely disturbed the global climate for several months. Where did the asteroid or comet hit? Research has focused on the Chicxulub crater. The 65 million–year–old Chicxulub impact crater is located in the Caribbean Sea near the Yucatán Peninsula of Mexico. The horseshoe shape of the crater and the pattern of debris in sedimentary rocks indicate that an asteroid or comet struck at a low angle from the southeast. This artist’s interpretation represents the impact and its immediate effect—a cloud of hot vapor and debris that could have killed most of the plants and animals in North America within hours. About 180 km in diameter, the crater is the right size to have been caused by an object with a diameter of 10 km.
  7. The first mammals evolved from a group of mammal-like reptiles called therapsids about 220 million years ago during the Triassic period. The therapsids were among the very few reptiles in a subgroup called "synapsids" that had just barely survived the great dying at the end of the Permian, about 250 million years ago. This massive extinction event was the most severe and dramatic in the history of life on earth and marks the end of the Paleozoic era. More than 90 percent of all marine species were wiped out, including every species of the familiar trilobite; 75 percent of the reptile and amphibian species, including most of the mammal-like reptiles were likewise eliminated.