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Benzodiazepines 
All benzodiazepines have a 
benzene ring attached to a 
diazepine ring. 
In the green circles are 
benzene rings and in the red 
circle is a diazepine ring, with 
the whole 1,4-benzodiazepine 
system being in the blue ring 
(the 1 and 4 denote the 
position of the nitrogen atoms 
in the ring
Benzodiazepines 
Different benzodiazepines have been developed through chemical 
substitutions at two major positions on the benzodiazepine 
structure 
Therefore, all benzodiazpines are simply variations on the same 
core chemical structure.
Benzodiazepine 
R1 R2 R3 R4 
a CH3 H H Cl 
b CH3 H F Cl 
c H H H NO2 
d H H Cl NO2 
a. diazepam b.flutoprazepam c. nitrazepam 
d. clonazepam
Modification: (triazole or imidazole) 
estazolam, alprazolam, trizolam and 
midazolam 
N 
N 
(Z) 
Cl 
N 
R2 
R1 N 
N 
N 
(E) 
Cl 
F 
H3C N 
R1 R2 
estazolam H H 
alprazolam CH3 H 
trizolam CH3 Cl 
Midazolam CH3 F
The duration of action for an individual 
benzodiazepine depends on two factors: 
1- the half-life and 
2- the metabolic fate
Mechanism of action
Chemical synthesis of Librium
Chemical synthesis of diazepam
Structure- activity relationship: 
• The electron attractive substituents on ring A 
enforce the activity 
NO2>Br>CF3>Cl 
• Ring B is necessary for activity 
• The electron attractive substituents with small 
volume on benzene ring of C-5 will enforce the 
activity 
• The hydrolysis of amide and imine
Ring A 
•The minimum requirement for 5-phenyl 
1,4 benzodiaipin 2one derivatives to 
BZR include an aromatic or 
hetroaromatic ring 
•It is believed to participate in pi-pi 
bonding with aromatic residue of 
aromatic amino acids of the receptor 
•The substitution on this ring produces 
varied effect on binding with the 
receptor, however such effects are not 
predictable on the basis of electronic and 
stearic properties
•An electronegative group (halo or 
nitro) substituted at 7-position 
markedly increase activity and 
binding affinity 
•Substitution on 6,8 and 9 decrease 
the activity 
•On the other hand 1-4 diazepine 
derivative having ring A replaced 
with hetrocyclic ring have weak 
activity and affinity as compared to 
phenyl derivatives
Ring B 
A proton accepting group (carbonyl oxygen) at 2- 
position of ring B is necessary to interact with 
receptor histidine residue that act as proton donor and 
help in ligand binding 
Electron donating group must be in the same plane 
with electronegative group on ring A, favoring a 
coplanar spatial orientation of two moieties 
Substitution of O with S effect selective binding 
GABA BZR sub-populations but anxiolytic activity is 
maintained 
Substitution 3-position methylene or imine nitrogen is 
sterically unfavorable 
Derivatives having 3-hydroxy moiety have 
comparable potency to non-hydroxylated analogue 
but are excreted faster
Esterification of 3-hydroxy moiety is 
possible without loss of activity 
1-poition amide nitrogen and its 
substituent are not required for in vitro 
binding with BZR because many N-alkyl 
side chains don’t decrease BZR affinity 
Neither 4,5 double bond nor the nitrogen 
of 4-position is required for activity 
If C=N is reduced BZR affinity is 
decreased but the derivatives again 
oxidized in the body to C=N
Ring C 
The 5-phenyl ring C is not required for 
binding to the BZR in vitro, however, this 
aromatic ring contribute favorable hydrphobic 
or steric interactions to receptor binding and 
its relationship to ring A 
Substitution at 4' (para position) is 
unfavorable for activity, however, ortho 
substitution is not detrimental to agonist 
activity
Annelating the 1,2 bond of ring B with an 
additional electron rich ring such as triazole 
(alprazolam) or imidazole (midazolam) 
results in pharmacologically active 
benzodiazepine derivatives with high 
affinity to BZR 
triazole 
imidazole
Benzodiazopines SAR by dr. khalid hussain

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Karra SKD Conference Presentation Revised.pptx
 

Benzodiazopines SAR by dr. khalid hussain

  • 1. Benzodiazepines All benzodiazepines have a benzene ring attached to a diazepine ring. In the green circles are benzene rings and in the red circle is a diazepine ring, with the whole 1,4-benzodiazepine system being in the blue ring (the 1 and 4 denote the position of the nitrogen atoms in the ring
  • 2. Benzodiazepines Different benzodiazepines have been developed through chemical substitutions at two major positions on the benzodiazepine structure Therefore, all benzodiazpines are simply variations on the same core chemical structure.
  • 3. Benzodiazepine R1 R2 R3 R4 a CH3 H H Cl b CH3 H F Cl c H H H NO2 d H H Cl NO2 a. diazepam b.flutoprazepam c. nitrazepam d. clonazepam
  • 4. Modification: (triazole or imidazole) estazolam, alprazolam, trizolam and midazolam N N (Z) Cl N R2 R1 N N N (E) Cl F H3C N R1 R2 estazolam H H alprazolam CH3 H trizolam CH3 Cl Midazolam CH3 F
  • 5. The duration of action for an individual benzodiazepine depends on two factors: 1- the half-life and 2- the metabolic fate
  • 9. Structure- activity relationship: • The electron attractive substituents on ring A enforce the activity NO2>Br>CF3>Cl • Ring B is necessary for activity • The electron attractive substituents with small volume on benzene ring of C-5 will enforce the activity • The hydrolysis of amide and imine
  • 10. Ring A •The minimum requirement for 5-phenyl 1,4 benzodiaipin 2one derivatives to BZR include an aromatic or hetroaromatic ring •It is believed to participate in pi-pi bonding with aromatic residue of aromatic amino acids of the receptor •The substitution on this ring produces varied effect on binding with the receptor, however such effects are not predictable on the basis of electronic and stearic properties
  • 11. •An electronegative group (halo or nitro) substituted at 7-position markedly increase activity and binding affinity •Substitution on 6,8 and 9 decrease the activity •On the other hand 1-4 diazepine derivative having ring A replaced with hetrocyclic ring have weak activity and affinity as compared to phenyl derivatives
  • 12. Ring B A proton accepting group (carbonyl oxygen) at 2- position of ring B is necessary to interact with receptor histidine residue that act as proton donor and help in ligand binding Electron donating group must be in the same plane with electronegative group on ring A, favoring a coplanar spatial orientation of two moieties Substitution of O with S effect selective binding GABA BZR sub-populations but anxiolytic activity is maintained Substitution 3-position methylene or imine nitrogen is sterically unfavorable Derivatives having 3-hydroxy moiety have comparable potency to non-hydroxylated analogue but are excreted faster
  • 13. Esterification of 3-hydroxy moiety is possible without loss of activity 1-poition amide nitrogen and its substituent are not required for in vitro binding with BZR because many N-alkyl side chains don’t decrease BZR affinity Neither 4,5 double bond nor the nitrogen of 4-position is required for activity If C=N is reduced BZR affinity is decreased but the derivatives again oxidized in the body to C=N
  • 14. Ring C The 5-phenyl ring C is not required for binding to the BZR in vitro, however, this aromatic ring contribute favorable hydrphobic or steric interactions to receptor binding and its relationship to ring A Substitution at 4' (para position) is unfavorable for activity, however, ortho substitution is not detrimental to agonist activity
  • 15. Annelating the 1,2 bond of ring B with an additional electron rich ring such as triazole (alprazolam) or imidazole (midazolam) results in pharmacologically active benzodiazepine derivatives with high affinity to BZR triazole imidazole