X ray crystallography

STRUCTURAL ANALYSIS BY X-RAY
CRYSTALLOGRAPHY
By
SIJINU MATHEW
Physical Science
Roll no 13
1
ELECTRO MAGNETIC SPECTRUM
 Electro magnetic spectrum is the entire range of electro
magnetic waves from lower to higher frequency. It
contain various types of radiations.
 gamma rays, x-rays, UV-Visible, IR, Micro waves and
radio waves.
2
ELECTRO MAGNETIC SPECTRUM
3
X-RAYS
 X-rays have the short wavelengths to see the atoms and
molecular structure of molecules.
 Wavelength range is 1-10 Å
 Discovered by Wilhelm Rontgen in 1895.
 It can be generated by reducing the speed of electrons.
4
X-ray Crystallography
 It is a scientific method of determining the precise
arrangements of atoms in a crystal where beams of x-ray
strikes a crystal and causes the beam of light to diffract
into specific directions.
5
Contd........
 This method is widely used to obtain high resolution
protein structural information.
 This technique relies the dual nature of x-rays to discover
information about structure of crystalline materials.
 The pattern produced by the diffraction of x-rays through
the closely spaced lattice of atoms in a crystal is
recorded and analysed to reveal the nature of that lattice.
6
Contd....
 The sample that is in crystalline form is bombarded
with beam of x-rays , then most of the x-ray pass
straight through the crystal some are diffracted by it.
 The resulting pattern recorded by a detector .
 Pattern is the three dimensional structure of sample
 This method can give detailed atomic structure such as
about ligands, inhibitors, ions, and other molecules.
7
Bragg’s Law
 It is a fundamental law and valid for monochromatic x-
rays only and it is used to calculate interplanar spacing
using x-ray diffraction spectra
 It defines the spacing(d) of atomic planes and incident
angle(Ө) at which x-rays of a particular wavelength will
reflect in phase.
8
9
nλ = 2d sinθ
 The Bragg’s equation is,
nλ=2d sinθ
Single X-ray Crystallography
 It is the oldest and more precise model
 A beam of x-rays strikes a single crystal, producing
scattered beams.
 It has three steps,
10
Instrumentation of Single X-ray
Crystallography
11
Nature of the Crystal
 The crystal should be large , pure in composition and
regular in structure, with no significant internal
imperfections such as crack or twinning.
 The crystal placed in an intense beam of x-rays , usually
single wavelength producing regular pattern of
reflections.
12
Contd......
 When the crystal is rotated that time reflection will
change and intensity will be recorded.
 These data are combined computationally with
complementary chemical information to produce and
refine a model of the arrangement of atoms with in the
crystal.
13
Applications
 Determination of unit cell, bond-lengths, bond-angles
 Variations in crystal lattice
 With specialized chambers, structures of high pressure
and/or temperature phases can be determined
 Powder patterns can also be derived from single-crystals
by use of specialized cameras (Gandalf) applications.
14
Limitations
 The unit cell is larger and more complex.
 The atomic level picture provided by x-ray
crystallography become less well resolved.
15
TYPES OF X-RAY
CRYSTALLOGRAPHY
16
17
18
Contd……
 X-ray generated in the tube T are passed through a slit,
so as to obtained a narrow beam which is then allowed to
strike single crystal which is mounted on the turn table.
 The crystal is rotated gradually by means of the turn table
as to increase the glancing angle.
Contd…….
 The intensities of the reflected rays are measured on a
recording device. The process is carried out for each
plane of the crystal till the angles for reflection θ give the
maximum value.
 The lowest angle at which the maximum reflection occurs
corresponds to n= 1. this is first order reflection and so
on.
19
POWDER METHOD – DEBYE - SCHERRER
METHOD
20
Contd….
 Used for the crystal with simple structure
 Powder contain small crystal that are oriented in all
directions .
 As a result x-rays are scattered from all sets of planes.
 Scattered rays are detected by using an x-ray sensitive
film.
 The finely powdered substance is kept in the form of a
cylinder inside a thin glass tube.
 Narrow beam of x-rays is allowed to fall on the powder.21
 The diffracted x-rays strike a strip of photographic film
arranged in the form of a cylindrical arc.
 In this method rotation is not needed because powder
sample contains micro crystals arranged in all possible
orientations.
 A large number of them will have their lattice planes in
corrected positions for maximum x-ray reflection to
occur.
 We get lighted areas in the form of arcs of lines at
different distances from the incident beam.
22
Advantages
 Non-destructive nature, high sensitivity,
 Easy sample preparation,
 System is user friendly, operational procedure is
convenient, fast , effective resolution.
 Low maintenance cost, proper automation, easy data
interpretation that could be used for both qualitative and
quantitative analysis.
Disadvantage
 Use of harmful radiations.
23
Applications
 Pharmaceutical industry
 Forensic studies
 In glass industry
 Crystalline study
 Nano and material science
24
Factors Affecting X-ray Crystallography
 Purity of sample
 Concentration
 pH of solution
 Temperature
 Time
 Volume of crystallisation
 Pressure
25
Advantages and Disadvantages
Advantages
 X-rays are the least expensive, most convenient and
widely used to determine crystal structures.
 X-rays are not absorbed very much by air, so the sample
need not be in an evacuated chamber.
Disadvantages
 X-rays do not interact very strongly with higher elements.
26
Applications
 Distinguishing between crystalline & amorphous
materials.
 Determination of the structure of crystalline materials.
 Determination of electron distribution within the atoms &
throughout the unit cell.
27
 Determination of the orientation of single crystals.
 Determination of the texture of polygrained materials.
 Measurement of strain and small grain size………
28
Medical Applications
 In diagnosis & treatment
 Tuberculosis& emphysema
 Dentists
 CT or CAT(computerized axial tomography)
 X-ray therapy
29
CONCLUSION
The advent of x-ray diffraction in the early 20th century
transformed crystallography from an area of scientific
inquiry largely limited to physics, mineralogy, and
mathematics to a highly interdisciplinary field which now
includes nearly all life and physical sciences as well as
material science and engineering.
30
Reference
 https://en.wikipedia.org/wiki/X-ray crystallography
 www.academia.edu/7587033/x-ray crystallography and
its applications
 www.amicsonline.org
 http://xos.com
31
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X ray crystallography

  • 1. STRUCTURAL ANALYSIS BY X-RAY CRYSTALLOGRAPHY By SIJINU MATHEW Physical Science Roll no 13 1
  • 2. ELECTRO MAGNETIC SPECTRUM  Electro magnetic spectrum is the entire range of electro magnetic waves from lower to higher frequency. It contain various types of radiations.  gamma rays, x-rays, UV-Visible, IR, Micro waves and radio waves. 2
  • 4. X-RAYS  X-rays have the short wavelengths to see the atoms and molecular structure of molecules.  Wavelength range is 1-10 Å  Discovered by Wilhelm Rontgen in 1895.  It can be generated by reducing the speed of electrons. 4
  • 5. X-ray Crystallography  It is a scientific method of determining the precise arrangements of atoms in a crystal where beams of x-ray strikes a crystal and causes the beam of light to diffract into specific directions. 5
  • 6. Contd........  This method is widely used to obtain high resolution protein structural information.  This technique relies the dual nature of x-rays to discover information about structure of crystalline materials.  The pattern produced by the diffraction of x-rays through the closely spaced lattice of atoms in a crystal is recorded and analysed to reveal the nature of that lattice. 6
  • 7. Contd....  The sample that is in crystalline form is bombarded with beam of x-rays , then most of the x-ray pass straight through the crystal some are diffracted by it.  The resulting pattern recorded by a detector .  Pattern is the three dimensional structure of sample  This method can give detailed atomic structure such as about ligands, inhibitors, ions, and other molecules. 7
  • 8. Bragg’s Law  It is a fundamental law and valid for monochromatic x- rays only and it is used to calculate interplanar spacing using x-ray diffraction spectra  It defines the spacing(d) of atomic planes and incident angle(Ө) at which x-rays of a particular wavelength will reflect in phase. 8
  • 9. 9 nλ = 2d sinθ  The Bragg’s equation is, nλ=2d sinθ
  • 10. Single X-ray Crystallography  It is the oldest and more precise model  A beam of x-rays strikes a single crystal, producing scattered beams.  It has three steps, 10
  • 11. Instrumentation of Single X-ray Crystallography 11
  • 12. Nature of the Crystal  The crystal should be large , pure in composition and regular in structure, with no significant internal imperfections such as crack or twinning.  The crystal placed in an intense beam of x-rays , usually single wavelength producing regular pattern of reflections. 12
  • 13. Contd......  When the crystal is rotated that time reflection will change and intensity will be recorded.  These data are combined computationally with complementary chemical information to produce and refine a model of the arrangement of atoms with in the crystal. 13
  • 14. Applications  Determination of unit cell, bond-lengths, bond-angles  Variations in crystal lattice  With specialized chambers, structures of high pressure and/or temperature phases can be determined  Powder patterns can also be derived from single-crystals by use of specialized cameras (Gandalf) applications. 14
  • 15. Limitations  The unit cell is larger and more complex.  The atomic level picture provided by x-ray crystallography become less well resolved. 15
  • 17. 17
  • 18. 18 Contd……  X-ray generated in the tube T are passed through a slit, so as to obtained a narrow beam which is then allowed to strike single crystal which is mounted on the turn table.  The crystal is rotated gradually by means of the turn table as to increase the glancing angle.
  • 19. Contd…….  The intensities of the reflected rays are measured on a recording device. The process is carried out for each plane of the crystal till the angles for reflection θ give the maximum value.  The lowest angle at which the maximum reflection occurs corresponds to n= 1. this is first order reflection and so on. 19
  • 20. POWDER METHOD – DEBYE - SCHERRER METHOD 20
  • 21. Contd….  Used for the crystal with simple structure  Powder contain small crystal that are oriented in all directions .  As a result x-rays are scattered from all sets of planes.  Scattered rays are detected by using an x-ray sensitive film.  The finely powdered substance is kept in the form of a cylinder inside a thin glass tube.  Narrow beam of x-rays is allowed to fall on the powder.21
  • 22.  The diffracted x-rays strike a strip of photographic film arranged in the form of a cylindrical arc.  In this method rotation is not needed because powder sample contains micro crystals arranged in all possible orientations.  A large number of them will have their lattice planes in corrected positions for maximum x-ray reflection to occur.  We get lighted areas in the form of arcs of lines at different distances from the incident beam. 22
  • 23. Advantages  Non-destructive nature, high sensitivity,  Easy sample preparation,  System is user friendly, operational procedure is convenient, fast , effective resolution.  Low maintenance cost, proper automation, easy data interpretation that could be used for both qualitative and quantitative analysis. Disadvantage  Use of harmful radiations. 23
  • 24. Applications  Pharmaceutical industry  Forensic studies  In glass industry  Crystalline study  Nano and material science 24
  • 25. Factors Affecting X-ray Crystallography  Purity of sample  Concentration  pH of solution  Temperature  Time  Volume of crystallisation  Pressure 25
  • 26. Advantages and Disadvantages Advantages  X-rays are the least expensive, most convenient and widely used to determine crystal structures.  X-rays are not absorbed very much by air, so the sample need not be in an evacuated chamber. Disadvantages  X-rays do not interact very strongly with higher elements. 26
  • 27. Applications  Distinguishing between crystalline & amorphous materials.  Determination of the structure of crystalline materials.  Determination of electron distribution within the atoms & throughout the unit cell. 27
  • 28.  Determination of the orientation of single crystals.  Determination of the texture of polygrained materials.  Measurement of strain and small grain size……… 28
  • 29. Medical Applications  In diagnosis & treatment  Tuberculosis& emphysema  Dentists  CT or CAT(computerized axial tomography)  X-ray therapy 29
  • 30. CONCLUSION The advent of x-ray diffraction in the early 20th century transformed crystallography from an area of scientific inquiry largely limited to physics, mineralogy, and mathematics to a highly interdisciplinary field which now includes nearly all life and physical sciences as well as material science and engineering. 30
  • 31. Reference  https://en.wikipedia.org/wiki/X-ray crystallography  www.academia.edu/7587033/x-ray crystallography and its applications  www.amicsonline.org  http://xos.com 31
  • 32. 32