1.
FAIR Data and Model
Management
for Systems Biology
Projects
Prof Carole Goble
FAIRDOM Consortium
The University of Manchester, UK
carole.goble@manchester.ac.uk
ISMB/ECCB 2015, Dublin, Ireland

2.
Findable
Accessible
Interoperable
Reusable
Data
S O Ps
Models
http://www.fair-dom.org
http://www.fairdomhub.org
Assets
Aggregated
Commons for
Sys Bio Projects

3.
Data
Samples
SOPs
Models
Publications

4.
Programmes, Projects, Groups
Is this data available?
What SOP was used for
this sample?
Where is the validation data for
this model?

5.
2008
Nature June 2015

6.
Find
Yellow pages: projects, people
Trans-asset cataloguing & linking
Structure studies
Manage and store assets
Controlled access
Versioning
Trans-repository gateway
Deposit and download wrt
specialist public archives
Access/Archive
Interoperate
Standards compliant practices
Curation support
Tool plug-ins and API
Leverage other platforms
Analytics
Reuse/Reproduce
Consistent reporting
Simulate models with exp’mtl data
Publisher/Funder Commons with DOIs
Download, package and export
Asset Management and Sharing Platform
for Systems Biology Projects
http://www.fair-dom.org

7.
Commons &
Cataloguing platform
Web-based cataloguing and
aggregation.
Find, Access, Describe,
Structure, Link, Exchange
project assets.
Central and distributed
repositories.
RESTAPI
LIMS & Analytics
platform
Extract,Transform and Load
tooling direct from the
instrumentation.
Data analysis pipelines,
automatic archiving.
Large data.
Funding to 2019
http://www.seek4science.org
http://www.cisd.ethz.ch/software/openBIS

8.
Consumers
Producers
Commons
Project
Repositories
harvesting
link
Standards
organise
validate
Native
Commons
Repositories

9.
Aggregated Commons Infrastructure
Cataloguing ++

10.
FAIRDOM Metadata framework
link studies and link assets
Common
elements and
relationships
between things
produced and
used in
experiments.
Structured
descriptions
Consistency
Comparison
Dealing with novel
data
Just Enough
Results Model

11.
https://doi.org/10.15490/seek.1.investigation.56
Penkler et al (2015) FEBSJ 282:1481-1511.

12.
Linking platforms to the Commons Catalogue

13.
FAIR Controlled Sharing & Publishing

14.
RO Unzip
Snapshot into
Research Object
bundles for exchange
& publication

15.
FAIRDOM Platform and Software Suite
Different ways of using FAIRDOM
with OpenBIS or with own project DB
Self-m’ged
Commons
Project X
Commons
Public, Hosted
Commons
FAIRDOMHub.org
Full independent
self-management on
FAIRDOMHub.org
Sept 2015

16.
Community
Facilities
Project Support
Training and Services
Curation
Sustainability
Knowledge Networks
Forums, Workshops
Summer Schools
Working Groups
Standards
User and Developer
WGs - Samples
Partnerships
Developer Foundry
FAIRDOM developers
Free Open Source Software
VMs and Docker
Supporting projects
FAIRDOM Centres
National Infrastructures
“ISBE Light”
Working with funders
http://seek4science.github.io/seek/
de.NBI

17.
https://sems.uni-rostock.de/reproducible-and-citable-data-and-models/

18.
Carole Goble Stuart Owen
Finn Bacall
Jacky Snoep
Wolfgang
Mueller
Olga Krebs Quyen Nguyen
Natalie Stanford
KatyWolstencroft
Peter Kunzst Bernd Rinn
Donal FellowsAlanWilliams
Rostyslav
Kuzyakiv
Jakub
Straszewski
Chandrasekhar
Ramakrishnan
Caterina
Barillari
Norman Morrison

19.
Find
Yellow pages: projects, people
Trans-asset cataloguing & linking
Structure studies
Manage and store assets
Controlled access
Versioning
Trans-repository gateway
Deposit into specialist public
archives
Access/Archive
Interoperate
Standards compliant practices
Curation support
Tool plug-ins and API
Leverage other platforms
Analytics
Reuse/Reproduce
Consistent reporting
Simulate models with exp’mtl data
Publisher/Funder Commons with DOIs
Download, package and export
Asset Management and Sharing Platform
for Systems Biology Projects
http://www.fair-dom.org