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Mdr tuberculosis updates
1. Drug Resistant TB
- Recent Updates
Dr. Gyanshankar Mishra
MD (Pulmonary Medicine), DNB (Respiratory Diseases), MNAMS
Assistant Professor ,
Department of Respiratory Medicine,
GMC Nagpur
2. Drug resistance - Types & Definitions
Epidemiology
Diagnostics update – (emphasis on Gene
expert/LPA)
Management of Drug resistant TB update
Principles in brief
History of global guidelines/changes/updates
Implications on our current national guidelines
Shorter MDR TB regime
Bedaquiline
4. Drug resistance - types
When drug resistance is demonstrated in a patient who
has never received anti-TB treatment previously, it is
termed primary (Initial) resistance, i.e. TB patient’s initial
M.TB population resistant to drugs
Secondary (Acquired) resistance is that which occurs as
a result of specific previous treatment, i.e. Drug-resistant
M. TB in initial population, selected by inappropriate drug
use (inadequate treatment or non-adherence)
5. DRUG RESISTANT –TB (DR-TB)
Drug resistant TB
Mono resistance
Poly resistance
Multi Drug Resistant TB(MDR- TB)
Extensive Drug Resistant TB (XDR-
TB)
Total Drug Resistance (TDR – TB)
6. DRUG RESISTANT- TB(DR-TB)
Mono Drug Resistance
(Resistance to single first line ATT)
Poly Drug Resistance
(Resistance to two or more first line ATT
except MDR-TB)
7. DRUG RESISTANT- TB(DR-TB)
Multi-drug resistant tuberculosis (MDR TB) is defined as
resistance to isoniazid and Rifampicin (a laboratory
diagnosis).
Extensively drug resistant TB (XDR-TB) is MDR + resistance to
any fluoroquinolone + resistance to at least one 2nd-line
injectable drug (amikacin, kanamycin, or capreomycin)
8. MDR TB
Single Isoniazid or Rifampicin resistance is not MDR – TB.
MDR TB is a laboratory diagnosis, Not a Clinical assumption.
9.
10. TDR: Total Drug Resistance
Resistance to all first-line anti-TB drugs (FLD) and
second-line anti-TB drugs (SLD) that were tested.
13. India MDR TB Data
State representative community based
drug resistance surveys estimate the
prevalence of Multidrug resistant TB (MDR-
TB) to be ~3% among new TB cases and
12-17% among previously-treated TB
cases.
14. India XDR TB data
*NDTB center, 18400 isolates, 0.89% of all MDR were
XDR
**Hinduja Hospital, Mumbai, 3204 samples, 32%
MDR, 8% of MDR were XDR
*** KGMU, Lucknow: Among 68 MDR, 5 (7.4%) were
XDR
* Ind J Tub 2008; 55:104
**Sushil Jain et al ATS 2007 meet Abstract 1398
***Mondal R et al. Em. Inf. Dis 2007; 13:9
16. Suspicion of MDR TB
When should we suspect drug resistant TB?
A close contact of Drug Resistant TB case.
Treatment failures.
All retreatment cases.
No sputum conversion after initial 2 months of ATT.
Extensive disease at start of treatment.
All HIV patients with TB.
Extrapulmonary TB /Pediatric TB.
19. Culture dst of all 1st and 2nd line drugs prior to Treatment of
MDR TB. + Individualised treatment.
= Success rates of 68% …..Lung India. 31(4) Oct-Dec 2014.
20. Delay of culture dst : Patient’s all culture dst (1st and 2nd line ATT) available
7 years after initial diagnosis of PTB + Standardised Regime.
Success rate - patient not cured till date…IJME. Vol XI No 1 January-March 2014
22. Diagnosis…
Tests available are:
Conventional LJ culture DST – Gold standard
DST- modified proportion method. (4 to 6 weeks for culture & 3 weeks post culture for dst).
PCR based LPA (line probe assay) – DST result within 72 hours.
Other methods – (Liquid cultures)BACTEC 460, MGIT 960 (14 days + 9 days
for dst) , etc.
23. The Xpert MTB/RIF
The Xpert MTB/RIF is a cartridge-
based, automated diagnostic test
that can identify Mycobacterium
tuberculosis (MTB)DNA and
resistance to rifampicin (RIF)by
nucleic acid amplification
technique(NAAT )
Result within 2
hours.
25. Uses of Mycobactrium culture
To establish a definite diagnosis
Determine susceptibility: MDR
To identify the species
26. Mycobacterial culture
ADVANTAGES
Only test that confirms definite TB
More sensitive (detects 10 bacilli / ml)
DST can be done
DISADVANTAGES
Very Slow Growth (3-8 Weeks)
Less accessible than microscopy
More expensive than microscopy
Pivotal in the diagnosis and follow-up of MDR TB
27. Methods for Detection of Drug Resistance:
Conventional methods
Solid medium: L. J. Medium
Advantages:
Lower contamination rates
Can recognize mixed cultures
Morphology can be observed
Colony count can be performed
Much lower occupational health risk
33
28. Modern culture methods
(Automated)
BACTEC 460TB (B&D)- Radiometric detection of
14CO2 when 14C labeled palmitic acid in 7H12 is
metabolized – growth index.
BACTEC MGIT 960 (B&D) - fluorometric technology
which measures accurate O2 utilization- 7H9 media,
PANTA antibiotics.
MB/BACT(biomeriux)- colorimetric technology
29. Negative Culture
Little or No Fluorescence
Positive Culture
FF
FO2
FO2
FO2FO2
FO2
F
FO2FO2
CO2
O2
O2
O2 O2
O2
O2
O2
O2
CO2
CO2
O2
F
F F
F
FO2
FO2
F
F
F F
CO2
O2
O2
O2
O2
O2
Strong Fluorescence
Sensor
Broth
Head
space
MGIT Detection System
Free
flouroscent
molecules
AFB bacilli
30. Non-Conventional Methods and New Techniques in TB Diagnosis
Liquid Culture Media
Advantages
Greater sensitivity than solid
mediums
Faster growth detection
Disadvantages
Higher contamination rates
Difficult to recognize mixed cultures
Morphology can not be observed
Colony count can not be performed
Much higher occupational health
risk: need Biosafety level II/III Lab
31. Genotypic tests
These tests detect genetic mutations
linked with drug resistance
Xpert MTB/RIF (CBNAAT)
Line probe assay (LPA)
Inno-Lipa
Tested and validated for culture isolates
Genotype MDR TB Assay (Hain’s test)
Tested and validated for culture isolates and
direct sputum
33. Rapid Molecular Detection of
Tuberculosis and Rifampin Resistance
Xpert MTB/RIF, an automated, PCR based, molecular
test for M tb.and resistance to rifampin (RIF), with fully
integrated sample
NEJM Downloaded from www.nejm.org on September 1, 2010
34. Boehme,C et al NEJM 2010
Gene Xpert MTB/RIF:
Total processing
time = 2 hours
Reportable result:
Positive/negative TB
Resistance yes/no to
Rifampicin
35. How good is Xpert?
Systematic review with 27 studies, 9558 participants
Reference standard for detecting pulm TB was solid/liquid
culture
Reference standard for Rif resistance was phenotypic DST
For S+ C+ TB, the pooled sensitivity of Xpert
MTB/RIF was 98% , Specificity 99%
For S- C+ TB, the pooled sensitivity was 68% ,
Specificity 98%
For rifampicin resistance pooled sensitivity was 95%,
specificity was 98%
In HIV patients pooled sensitivity was 79%
36. In new version of GeneXpert poor predictive
Value for low Rif resistance may not be true
37. - 18 studies 4461 samples.
- Xpert sensitivity (versus culture) differed substantially between sample
types.
- In lymph node tissues or aspirates: 83.1% (95% CI 71.4–90.7%)
- In cerebrospinal fluid, 80.5% (95% CI 59.0–92.2%)
- In pleural fluid, 46.4% (95% CI 26.3–67.8%)
39. Xpert MTB/RIF in India
New case of PTB:
Do not start MDR-TB treatment based on
single positive report of GeneXpert
Repeat GeneXpert and MGIT culture
If repeat Gene Xpert pos: start Cat IV
If repeat Gene Xpert neg: start Cat I &
review later
In retreatment case: start MDR-
TB treatment based on single
positive report
40. Xpert in near future…
•Xpert® for HIV-1 Viral Load
(< 2houres, until 400 resulta/day)
•GeneXpert Omni (“point of care”,
smalles, mobile, low consume, also for
HPV, HCV, ebola…. )
•Xpert MTB/Rif Ultra (more sensitive, similar to
liquid culture)
•Xpert XDR (in a near future)
41. LPA (Genotype MDR TB Plus assay)
Detects both H (katG, inhA) and R (rpoB)
resistance
Results available on the same day (within 8
hours)
Good sensitivity and specificity
RIF: Sensitivity: 98.1%; Specificity: 98.7%
INH: Sensitivity 84.3%; Specificity: 99.5%
Limitations
Lab infrastructure and skilled personnel
Can be done only on smear positive samples
Low sensitivity for H res
Does not distinguish between live and dead
bacilli
42. 57
Line Probe Assay procedure overview
1 DNA Extraction 2 Amplification (PCR)
3 Hybridization (Detection) 4
Result interpretation
43. How do you interpret LPA?
If LPA shows R and H resistance treat as MDR
Ask for the type of mutation
If only kat G- patient has high level resistance to INH but
will be sensitive to Eto/Pto
If only inh A – patient can be given high dose INH but he
has high probability of resistance to Eto/Pto
If LPA shows only R resistance?
Start MDR-TB treatment, add H
Send Phenotypic DST & take action later
If LPA shows only H resistance treat accordingly
45. LPA for second line drugs
Cochrane review 2014
Genotype MDRTBsl assay for FQ & SLID
Pooled sensitivity 83.1% pooled specificity
was 97.7%
Genotype MDRTBsl assay for FQ & SLID
It is good rule in test, can’t rule out resistance
Can miss 1 in 5 cases of FQ resistance
Can miss 1 in 4 cases of SLID resistance
Among SLID Poorest sensitivity for kanamycin
46. LPA for second line drugs….
In smear negative the indeterminate results are higher
The sensitivity for quinolones and SLI differs hence the
accuracy of a diagnosis of XDR-TB overall is reduced
Quinolones
High correlation between oflox and levoflox resistance
on LPA with phenotypic resistance
Correlation of mutations with phenotypic resistance to
moxifloxacin and gatifloxacin is unclear
SLI
High correlation between SLI resistance on LPA with
phenotypic resistance
Conventional phenotypic DST to be used in the evaluation of
patients with a negative SL-LPA result
47. NS
nts
WHO
RECOMMENDATIONS
ON THE USE OF THE SL-LPA
http://www.who.int/tb/areas-of-work/laboratory/policy_statements
POLICY RECOMMENDATION
WHO recommends the use of the SL-LPA for patients
ESTABLISHING SL-LPA AT COUNTRY LEVEL
Countries with existing LPA capacity can
MOLECULAR LINE-PROBE ASSAY
FOR THE DETECTION OF RESISTANCE TO
SECOND-LINE ANTI-TB DRUGS (SL-LPA)
TUBERCULOSIS DIAGNOSTICS
BACKGROUND
Multidrug-resistant tuberculosis (MDR-TB) is a
public health crisis and a global health security
risk carrying grave consequences for those
affected.
An estimated 480 000 people developed MDR-
TB in 2014 and 190 000 people died as a result
of it.
Early detection of people with MDR-TB is one of
the major bottlenecks in tackling this epidemic.
Of the 480 000 MDR-TB cases estimated to have
occurred in 2014, only about a quarter –
123 000 – were detected and reported to
national authorities.
In May 2016, WHO issued new
recommendations on the use of a rapid
diagnostic test – a line probe assay to detect
resistance to second-line anti-TB drugs (SL-LPA).
WHO recommends this rapid diagnostic test for
identifying those MDR- or rifampicin-resistant
TB patients who can be placed on the shorter
MDR-TB regimen. The results of this test will
also be critical in placing patients on targeted
conventional MDR-TB regimens with improved
outcomes.
BENEFITS OF THE SL-LPA
The SL-LPA produces results in just 24-48 hours, a
vast improvement over the 3 months or longer
currently required.
It allows quick triage of confirmed rifampicin-
resistant or MDR-TB patients into either the shorter
MDR-TB regimen or the conventional longer
regimen.
Excluding second-line drug resistance a critical
prerequisite for identifying patients who can be
placed on the shorter MDR-TB regimen.
Detection of any second-line resistance by the SL-
LPA means that MDR-TB patients should not be
enrolled on the shorter regimen as this could
jeopardise their treatment outcome and fuel the
development of XDR-TB.
Photo credit: FIND
48. LPA for second line drugs ….
In 2016 version 2 of the SL-LPA launched
Probes for gyrB and eis in addition to gyr A and rrs;
sensitivity has increased
WHO gave new recommendations
Done on sputum samples For patients with
confirmed Rif resistance or MDR-TB, SL-LPA may
be used as the initial test instead of phenotypic
culture-based DST, to detect resistance to
fluoroquinolones and second line injectables
Samples (direct) or culture isolates (indirect)
from pulmonary and extra-pulmonary sites
Smear status can be positive or negative
51. Cross-resistance
Fluoroquinolones
Variable cross-resistance
Later generation FQs (Lfx, Mfx, Gfx) may be
effective in case of oflox resistance
In case of Lfx resistance Mfx may be effective
Mfx and Gfx have nearly complete cross
resistance
Test isolates for resistance to both Lfx and Mfx
Mfx should be tested at both 0.5 and 2 mcg
Thioamides
Eto and Pto have complete cross-resistance
54. Important principles of
MDR-TB regimen design
1. Use at least 4 reliable drugs .
2. Do not use drugs with cross resistance .
3. Eliminate drugs that are not safe for the patient.
4. Include drugs from Groups in a hierarchical
order.
5. Monitor and manage adverse effects of drugs.
6. Never add a single drug to failing regime.
55. General Treatment Principles
Provide 18-24 months’ treatment, always with
intensive phase of at least 6 months ( current WHO
guidelines -8 months).
Provide DOT therapy.
Warn patients about possible side-effects.
Manage side-effects appropriately.
Perform cultures monthly.
78. 2. Conventional MDR-TB regimens for adults & children
2a) In patients with rifampicin-resistant or multidrug-resistant TB, a
regimen with at least five effective TB medicines during the
intensive phase is recommended, including pyrazinamide and
four core second- line TB medicines – one chosen from group A, one
from group B, and at least two from group C
(conditional recommendation, very low certainty in the evidence).
If the minimum of effective TB medicines cannot be composed as
above, an agent from group D2 and other agents from D3 may
be added to bring the total to five.
W.H.O. Treatment Guidelines for Drug-Resistant TB.
2016 Update. RECOMMENDATIONS
79. 2. Conventional MDR-TB regimens for adults & children
2b) In patients with rifampicin-resistant or multidrug-resistant TB, it is
recommended that the regimen be further strengthened with high-
dose isoniazid and/or ethambutol
(conditional recommendation, very low certainty in the evidence).
It is recommended that any patient – child or adult - with rifampicin-resistant
TB in whom isoniazid resistance is absent or unknown be treated with a
recommended MDR-TB regimen, either a shorter MDR-TB regimen, or if this
cannot be used, a conventional MDR-TB regimen to which isoniazid is added.
There is no change in the recommended use of the new TB drugs from those
defined by the WHO interim guidance on bedaquiline (2013) and delamanid
(2014). The two drugs now occupy a unique subgroup within the Add-on agents
used to treat MDR-TB.
W.H.O. Treatment Guidelines for Drug-Resistant TB.
2016 Update. RECOMMENDATIONS
80.
81. 2 HRZE / 4 H R
Initial Res. H
Sm ( -) 2nd Month
Sm (+) 2nd M.
% CURE
Extend 1st Phase
Go to 2nd Phase
High Risk MDR-TB! but Susceptible ZE
Likelihood of generating MDR and XDR under NTP conditions
82. 2 HRZE/4 H R FAILURE
2. Initial Resistance to H (+%)
Risk of Resistance Amplification in Cat. I Failures receiving
Category II Regimen (1)
2 HRZE/4 H R MDR, but suscpt. Z+E
2HRZES/1HRZE/5H R E
Risk to Amplifying Resistance to E
(Avoidable if DST before 3rd Month)
86. CAT V- XDR TB
The Intensive Phase (6-12 months)
will consist of 7 drugs
Capreomycin (Cm), PAS,
Moxifloxacin (Mfx), High dose-
INH, Clofazimine, Linezolid, and
Amoxyclav
The Continuation Phase (18
months) will consist of 6 drugs –
PAS, Moxifloxacin (Mfx), High dose-
INH, Clofazimine, Linezolid, and
Amoxyclav
Reserve: Thiacetazone /
Clarithromycin
87. 20
treatment success than those who received longer conventional regimens (89.9% vs. 78.3% respectively when
success was compared with treatment failure/relapse/death (Table 5) and 83.4% vs. 61.7% when compared with
treatment failure/relapse/death/loss to follow-up; see also online Appendix 4). The number of relapses was
very low, although this may have been as a result of the relatively small number of patients followed up. As
expected, the treatment success was lower in patients with additional resistance to pyrazinamide and/or
fluoroquinolones on shorter MDR-TB regimens, even if in general it remained high and exceeded that in the
patients on individualised, conventional regimens (although the differences were not statistically significant).
Table 5. Treatment success in patients treated with a shorter MDR-TB regimen versus conventional MDR-TB
regimens10
Resistance pattern Shorter MDR-TB regimen Conventional MDR-TB regimen
N % (95% CI) N % (95% CI)
All cases regardlessof pyrazinamide
and fluoroquinolone susceptibility
1008/1116 90.3% (87.8%- 92.4%) 4033/5850 78.3% (71.2%- 84%)
Pyrazinamide resistant;
fluoroquinolone resistant
19/28 67.9% (47.6%-84.1%) 81/137 59.1% (50.6%-67.1%)
Pyrazinamide resistant;
fluoroquinolone susceptible
90/100 88.8% (47.3%-98.6%) 840/1075 81.4% (71.6%-88.4%)
Pyrazinamide susceptible;
fluoroquinolone resistant
12/15 80.0% (50.0%-94.1%) 72/120 64.4% (49.6%-76.9%)
Pyrazinamide susceptible;
fluoroquinolone susceptible
121/125 96.8% (77.3%-99.6%) 890/1119 83.5% (75.7%-89.2%)
10
treatment success (cured or treatment completed(14),(9)) versusfailure/relapse/death inpatientsnot previouslytreatedwithsecond-
line TB medications ; percentagesshown have been adjusted when possible (see online Appendix 4for more details)
W.H.O. Treatment Guidelines for Drug-Resistant TB.
2016 Update. RECOMMENDATIONS
90. WHO 2016 guidelines..
• Treatment regimens for isoniazid-resistant TB and M. bovis
• Owing to the lack of data to address directly the questions no clinically-useful
recommendations could be made by the group for these two forms of the disease.
• We need to look at our national guidelines then!
95. Bedaquiline
• Diarylquinolone
• Inhibits of the proton pump of Mycobacterial ATP
synthase – which provides energy to MTB
• Strong bactericidal and sterilizing activity.
• Extended half life – remains in plasma upto 5.5
months after stopping.
• Currently available under conditional access
programme -PMDT
96.
97. Be aware of…
• Prior to initiation:
• Adults / No rhythm disorder/ barrier contraceptive
• LFT/KFT/CBC (esp. Neutrophil/platelets)/Hb/ Lipase
• Eye examination (Lzd)
• QTcF >450 ms excluded
• Mg, Ca, K
• UPT
103. Cross-resistance Cfz-Bdq: myths & misconceptions
1. Patients with Rv0678 mutations are not more likely to fail treatment (current
data do not suggest an increased risk of failure in patients with low level
resistance)
2. Rv0678 mutations are not always due to prior use of Cfz or Bdq
3. Rv0678 mutations do not always lead to high MICs for both Cfz or Bdq
4. Use of Cfz may not result in Rv0678 mutations and cross resistance to Bdq 126
104. Only time will tell the future course
• If Bedaquiline will be elevated to a higher group eg.
Group C in the next WHO classification based on
evidences accumulating now?
• Will cure rates improve with bedaquiline based
regimes?
• Will bedaquiline resistance be a problem?
105.
106.
107.
108.
109. Carry home message
Drug resistant TB is a Lab diagnosis.
The best way to tackle it is to prevent it.
The earlier the diagnosis, the better is the outcome.
Manage drug resistant TB as per principles of
management of Drug resistant TB.
Bedaquiline is the drug of the future and has
revolutionized the ambitious possibility a shorter effective
regime for drug resistant TB.