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ISOLATION OF
GENOMIC DNA
WHAT IS DNA?
• Genetic material of an organism
• Polymer of Deoxyribonucleotides
• Found in Nucleus, Mitochondria, and Chloroplast
• Consist of four types of bases:
Nitrogen
bases
Purine
Adenine
(A)
Guanine
(G)
Pyrimidine
Cytosine
(C)
Thymine
(T)
WHAT IS THE STRUCTURE OF DNA?
• Primary structure of DNA Secondary structure of DNA Tertiary structure of DNA
WHY DO WE NEED TO ISOLATE
DNA?
SIGNIFICANCE
OF ISOLATION
OF DNA
FORENSIC
STUDY
GENETICS
STUDY OF
DISEASES
DETECTIN
G
MICROBES
IN
ENVIRONM
ENT
GENOME
SEQUENCI
NG
PATERNITY
DETERMIN
ATION
DIAGNOSIS
DRUG
DEVELOPM
ENT
WHY DO WE NEED DIFFERENT
PROTOCOLS FOR DNA ISOLATION?
• Due to differences in the cell structure of organisms, we require different protocols for
the isolation of DNA.
• For example, the CTAB method is used for the isolation of DNA from plants and fungi
due to the presence of cellulose and chitin cell walls respectively
• In comparison to plants and fungi, isolation from animal cells requires lesser effort and
different approaches to isolate DNA as animal cells are not enveloped in a cell wall.
STEPS FOR ISOLATION OF
DNA
Weigh mice
liver tissue
200gm
Extraction
buffer
(2.5mL)
Mice liver
tissue 200gm
Add 200µL of 10% SDS
Help to break the
tissue to release
DNA content
Breaks down cell
membranes and alters the
structure of proteins
Chemical
s
Stock Working Volume
(mL)
EDTA 0.5M 0.1M 10
SDS 10% 1% 5
Milli-Q
water
35
Add twice volume of 2M
NaCl solution
Shake vigorously for 2
minutes
Alters the structure of some cell
proteins. As a result, proteins get
denatured and placed at bottom of the
tube
Add 10µL Proteinase K
and 5µL RNase A
Incubate this cell lysate at 50ºC for
30minutes
Centrifuge lysate at 10,000rpm for
10minutes at 4ºC
Transfer supernatant and discard the
pellet
Transfer 500µL of supernatant
into 1.5mL tubes
Add an equal volume of Chloroform:
Isoamyl alcohol (24:1) and gently
mix it
Centrifuge lysate at 10,000rpm for
10minutes at 4ºC
Carefully transfer aqueous
layer into fresh tube
Add an equal volume of Absolute
Alcohol and gently mix it
Centrifuge lysate at 10,000rpm for
10minutes at 4ºC
Decant the supernatant
Add 70% Ethanol for washing
Centrifuge lysate at 10,000rpm for
10minutes at 4ºC
Decant the supernatant and
dry pellet properly
Store in Milli-Q water
Check at 0.8% Agarose Gel
THANK YOU

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Isolation of genomic DNA from Animal Tissue

  • 2. WHAT IS DNA? • Genetic material of an organism • Polymer of Deoxyribonucleotides • Found in Nucleus, Mitochondria, and Chloroplast • Consist of four types of bases: Nitrogen bases Purine Adenine (A) Guanine (G) Pyrimidine Cytosine (C) Thymine (T)
  • 3. WHAT IS THE STRUCTURE OF DNA? • Primary structure of DNA Secondary structure of DNA Tertiary structure of DNA
  • 4. WHY DO WE NEED TO ISOLATE DNA? SIGNIFICANCE OF ISOLATION OF DNA FORENSIC STUDY GENETICS STUDY OF DISEASES DETECTIN G MICROBES IN ENVIRONM ENT GENOME SEQUENCI NG PATERNITY DETERMIN ATION DIAGNOSIS DRUG DEVELOPM ENT
  • 5. WHY DO WE NEED DIFFERENT PROTOCOLS FOR DNA ISOLATION? • Due to differences in the cell structure of organisms, we require different protocols for the isolation of DNA. • For example, the CTAB method is used for the isolation of DNA from plants and fungi due to the presence of cellulose and chitin cell walls respectively • In comparison to plants and fungi, isolation from animal cells requires lesser effort and different approaches to isolate DNA as animal cells are not enveloped in a cell wall.
  • 8. Extraction buffer (2.5mL) Mice liver tissue 200gm Add 200µL of 10% SDS Help to break the tissue to release DNA content Breaks down cell membranes and alters the structure of proteins Chemical s Stock Working Volume (mL) EDTA 0.5M 0.1M 10 SDS 10% 1% 5 Milli-Q water 35
  • 9. Add twice volume of 2M NaCl solution Shake vigorously for 2 minutes Alters the structure of some cell proteins. As a result, proteins get denatured and placed at bottom of the tube Add 10µL Proteinase K and 5µL RNase A Incubate this cell lysate at 50ºC for 30minutes
  • 10. Centrifuge lysate at 10,000rpm for 10minutes at 4ºC Transfer supernatant and discard the pellet Transfer 500µL of supernatant into 1.5mL tubes
  • 11. Add an equal volume of Chloroform: Isoamyl alcohol (24:1) and gently mix it Centrifuge lysate at 10,000rpm for 10minutes at 4ºC Carefully transfer aqueous layer into fresh tube
  • 12. Add an equal volume of Absolute Alcohol and gently mix it Centrifuge lysate at 10,000rpm for 10minutes at 4ºC Decant the supernatant
  • 13. Add 70% Ethanol for washing Centrifuge lysate at 10,000rpm for 10minutes at 4ºC Decant the supernatant and dry pellet properly
  • 14. Store in Milli-Q water Check at 0.8% Agarose Gel