Phylogenetic ppt.pptx

31 May 2023
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
Phylogenetic ppt.pptx
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Phylogenetic ppt.pptx

Notes de l'éditeur

  1. COVID-19 is characterized by fever, cough, sore throat, fatigue, body aches, loss of taste or smell, and shortness of breath. However, some individuals may remain asymptomatic or have only mild symptoms, while others may develop severe respiratory distress, pneumonia, or other complications.
  2. From Alpha to Delta—Genetic Epidemiology of SARS-CoV-2 (hCoV-19) in Southern Poland The maximum likelihood phylogeny of Southern Poland whole-genome sequences generated in Nextclade. The amino acid substitutions were used and the maximum likelihood phylogenetic tree was developed for each wave. The different shades of blue, green, gray, and orange dots in the phylogenetic tree show the distribution of SARS-CoV-2 samples in the respective clades. The lineages that share the same mutations group together. The longer lines mean more mutations and sequences on single long lines mean unique mutations. The B.1.617.2 clade carried the highest number of mutations, followed by B.1.1.7, while clade P.1 and B.1.621.1 showed different mutations. The B.1.621.1 clade, despite other clades’ spike protein mutations, also had the extra substitution Y145H, while P.1 had additional sequence changes resulting in R190S, T638I, T1027I, and V1176F. Legend: 20A (Pango: B.1.160), 20B (Pango: B.1.1.277), 20C (Pango: B.1.367), 20D (Pango: C.36), 20J (Pango: P.1.1), 20I (Pango: B.1.1.7), 21H (Pango: B.1.621), and 21A (Pango: B.1.617.2).
  3. Genetic epidemiology using whole genome sequencing and haplotype networks revealed the linkage of SARSCoV-2 infection in nosocomial outbreak Figure 2. Phylogenetic tree analysis of SARS-CoV-2 genome from SUH. A phylogenetic tree was created using the genomes of the 32 isolates from SUH with the NJ method, as described in the Methods section
  4. High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing Phylogenetic trees generated by Nextstrain. 469 COVIDseq genomes reported from this study are highlighted. The 469 genomes cluster under clade A2a, I/A3i and B4, with A2a being the dominant clade.