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SPECIAL TYPE OF
CHROMOSOMES
WHAT IS A CHROMOSOME
DNA packaged tightly in thread like structures
Mainly seen in decondensed form but during cell division in
condensed form
DNA wrapped around proteins like histone results in
nucleosome , thus the complex of DNA plus histones and other
structural proteins is called chromatin
Chromosome have p or two short arms , q or two large arms
These arms are joined together by centromeres , they help to
keep chromosomes aligned during the complex process of cell
division
The two copies of a chromosome are called sister chromatids
The sister chromatids are identical to one another and are
attached to each other by proteins called cohesins
As long as the sister chromatids are connected they are still
considered to be one chromosome . However , as soon as they
are pulled apart during cell division , each is considered a
separate chromosome
Telomeres are repetitive stretches of DNA located at the ends
of linear chromosomes
They protect the ends of chromosomes in a manner similar to
the way the tips of shoelaces keep them from unravelling
In many types of cells , telomeres lose a bit of their DNA
every time a cells divides . Eventually , when all of the
telomere DNA is gone , the cell replicate and dies
CHROMOSOME STRUCTURE
CHROMOSOME
 Chromosomes are known as hereditary
vehicles
They are formed of strands of DNA molecules
which contain information for the development
of different characteristics and performance of
various metabolic activities of the cells
The coordination of various function is brought
about through the formation of enzymes which
are complex protein molecules
The information for the synthesis of these
protein molecules is contained in the DNA
molecules in the sequence of nitrogen bases
The sequences of three nitrogen bases that
codes for one molecule of a particular amino
acid constitutes a triplet codon
DNA of a particular cistron tanscribes its m
RNA
It carries genetic code similar to its DNA
It moves out of the nucleus and get attached to the
ribosome
The t RNA molecule pick specific activated amino
acids and recognize the codon on the m RNA by their
specific anticodons
The amino acids are thus linked together forming a
polypeptide chain , which is finally changed into
functional protein either singly or by the association of
several polypeptide chains
SPECIAL TYPES OF
CHROMOSOMES
In some organisms there are special tissues in
which chromosomes undergo structural
specializations
Such specialized chromosomes includes
Giant chromosomes
1. Polytene chromosomes
2. Lampbrush chromosomes
B chromosomes/supernumerary chromosomes
GIANT CHROMOSOMES
Exceptionally enlarged and highly specialized
Found during some stages of life cycle of
certain cells
Two kinds of giant chromosomes
ENDOMITOSIS
The enormous size is the result of peculiar kind of chromosomal re-
duplication called endomitosis or endoduplication
It is repeated duplication of chromatids in geometrical progression ,
without accompanying cell division
In this process the DNA and chromatids keep on multiplying in
geometrical progression
Thus , endomitosis makes the chromosomes multistranded and
increases its DNA content nearly 1000 times or more
It is common in certain types of cells of plants or animals
Examples are human liver cells , the giant abdominal neuron of
Aplysia , and macronucleus of ciliates
POLYTENE CHROMOSOMES
Special types of interphase chromosomes that are large
These giant chromosomes are found in the cells of salivary
glands of Drosophila and Chironomus larvae and in the cells
of fat bodies of larval stages of certain dipterans
They were first observed in the salivary glands of
Chironomus and hence are called salivary gland
chromosomes
They are cable like multi stranded giant chromosomes
They are also seen in synergids and antipodal cells of
ovules of certain angiosperms , intestinal epithelium ,
malphigian tubules etc.
They were first observed by Balbani
STRUCTURE
The polytene chromosomes presents a distinct pattern of
transverse banding
It consist of dark coloured bands alternating with light
coloured interbands
Nearly 85% of the chromosomal DNA is in the dark bands
and the remaining 15 % is in the interbands (light)
Bands are mostly heterochromatic, and the interbands are
euchromatic
It is assumed that the band region is formed by the merging of
chromomeres of adjoining chromatids through condensation and
localized super coiling of chromatin filaments
The bands are specific for a particular chromosome and
banding pattern is almost similar in both the homologous
chromosomes of a pair
Therefore during meiosis the pairing between homologous
chromosomes is band to band
Each band consists of genes that can code for more than one
protein hence polygenic
Each band is believed to contain tissue specific genes
Each gene in the band may have multiple copies which are not
transcriptionally active all the time
On the other hand , interbands are believed to contain house
keeping genes , which are constantly transcribed and translated
into products necessary for the cell
The structure of giant chromosomes is modified in certain
regions such that one or more specific bands enormously
enlarge and bulge out , forming local swellings , called
chromosome puffs
They are formed by the uncoiling of chromatin filaments
Puffs are transcriptionally active expansions or extensions of
chromatin
So they are active centres of the synthesis and accumulation of
RNAs
In some cases , in addition to RNA , extra DNA is also
producing during puffing
Such puffs are the sites of specific gene amplification and are
responsible for differentiation and development
In some puffs , chromatin filaments are drawn out as a series of
lateral loops , known as BALBIANI rings
There are four categories of chromosome puffs
Stage specific puffs
Tissue specific puffs
Constitutive puffs
Environmentally induced puffs
Puffing is a cyclic and reversible process
At definite times , puffs appear , grow and finally disappear
to repeat the whole cycle over and over again
Puffing involves the regular succession of four major
events
Excessive accumulation of acidic proteins
Detachment of the DNA bound basic proteins to expose the DNA for
transcription
Despiralisation and decondensation of chromatin
Active synthesis and storage of RNAs
Puffing is mainly initiated during accumulation of acidic
proteins ,it is also shown that insect moulting hormone
called ecdysone induces puffing
Puffs and Balbiani rings are regarded as the active centres
for DNA duplication and RNA synthesis
Hence puffing is interpreted as a manifestation of gene
expression
Since active DNA duplication occurs in puffs , they may
contain heavy accumulation of redundant and repetitive
DNA sequences
These are the main characteristics of polytene
chromosome present in dipteran
In case of polytene chromosomes in ciliates they doesn't
have neither contain puffs , and Balbiani rings nor do they
show any sign of transcriptional activity
In them fully formed chromosomes first get transected by
‘membranous’ partitions , which appear in interband regions
These membranes consist of only a single diffuse layer of
proteins , which accompanies polytenization of
chromosomes
Then , each band and the adjacent interband get
completely enclosed within a membrane , forming a vesicle
Thus a series of vesicles are formed all along the chromosome
The vesicle stage would be followed by the shrinkage of
chromosome
The transection of chromosome , the formation of vesicles and
the shrinkage of the chromosome are associated with a
progressive reduction in DNA content
Nearly 85-90-% of the DNA is degraded to acid soluble
products , that are permanently lost from the chromosome
Soon after degradation and elimination of DNA , vesicles
disappear
The small amount of DNA that still remains and undergoes
LAMPBRUSH
CHROMOSOMES
Longest chromosomes of all
In oocytic nuclei of those animal which have large yolky eggs ,
the prophase of first meiotic division is extremely extended
During this phase the oocytes grow and synthesis nutrition for
the future embryo
In them , the chromosomes become greatly enlarged and
assume unusual configuration
A large number of loops projects out from the chromatid axis ,
giving it a lampbrush appearance . Hence are called lampbrush
chromosomes
The lampbrush chromosomes are bivalents , each consisting of
two chromatids
These persist during the prolonged diplotene phase of first
meiotic prophase
First observed by Flemming (1882) and described by Ruckert
(1892)
They are seen in diplotene phase of insects , sharks ,
amphibians , reptiles and birds
The lampbrush chromosomes in the oocytes of salamanders
are the largest of all known chromosomes
STRUCTURE
A lampbrush chromosome consists of a central axis and a
paired series of loop like lateral extensions
The central axis consists of two bivalent homologous
chromosomes , each with two chromatids , so altogether 4
chromatids are present
They are held together through contact points or
chiasmata
The chromatids are drawn out into paired lateral loops ,so
central axis extend to the lateral loops as loop axis
Loop axis is only a single chromatid of one of the
Lateral loops contain bundles of sub-microscopic fibrils
Both the central axis and the loop axis are formed of
deoxyribonucleoprotein
The loop axis may be coated with a matrix of RNA and
proteins
Lateral loop contain a fully extended DNA duplex ,they are
believed to be formed of uncoiling of sister chromatids ,
making their DNA available for transcription
Lateral loops are the active centres for RNA synthesis
Each loop may contain one or more transcription unit or transcriptons
Most of the newly synthesized RNA molecules associate with
proteins and form a ribonucleoprotein (RNP) matrix
 m RNA is also associated development of zygote
The chromosomal axis may contain paired series of granular
chromomeres , from were loop axes extend
Usually 1-9 loops may arise from each chromomere
Small swellings , without loops , may be present towards the end of
the central axis ,they represent the telomeres
Each bivalent may contain a loopless swelling also it represents the
centromere
There are to main hypothesis regarding lampbrush
chromosomes
According to Callen and Lyod - master and slave
hypothesis , each loop axis is polygenic , with repetitive
DNA sequences and multiple copies of genes
The centromere is believed to contain the master copy of
each gene (master gene) , and the loop axis contains its
duplicate copies (slave genes ). Only master gene take part
in transcriptional activity
According to spinning out and retraction hypothesis , a
chromomere is a fully transcribed gene from end to end by
spinning out a transient loop
The new loop material spins out on one side of a chromomere
at the thin end of loop and returns to a condensed stage on the
other side after completing the synthesis of RNA
These are associated with the rapid synthesis of yolk
(deutoplasmic) and RNA , protein in the maturing ovum
These disappear by the end of first prophase when
chromosomes become thick and more condensed
B CHROMOSOMES OR
SUPERNUMERARY
CHROMOSOMES
Accessory , aberrant or redundant chromosomes
Extra copies of normal chromosomes
Not homologous to normal chromosomes and are not
essential
Normally they are highly heterochromatic
They are present in many species of animals and flowering
plants like maize , rye ,some ants ,some grasshoppers etc.
Their increased presence in individual organisms produce
no marked phenotypic effects
They are often lost or gained in an individual organisms
Some features include;
Smaller in size , heterochromatic ,allocyclic and telocentric or
acrocentric
Exhibit structural polymorphism among cells and tissues of same
organism
Genetic effects is less compared to other chromosome
Present in large amount affect fertility and vigour
Relatively unstable , get eliminated due to lagging and non –
disjunction
Non – mendelian inheritance
No chiasmata pairing
Appreciable quantity of highly repetitive DNA with very low
cytosine and guanine content
More amount of histone and lesser protein content
Two main groups ;
Mitotically stable B chromosome whose number is same in the
cells of an individual organism
Mitotically unstable B chromosome whose number is different in
different cells of an organism
Effects of B chromosome
Delay the flowering time of plants
Adversely affect the plant character like height , weight etc.
Suppress or promote meiotic pairing
The current concept is that B chromosome might have
formed from small fragments through the clustering of highly
repetitive and heteropycnotic satellite DNA and other
structural re-arrangements
They eventually become as large as other chromosomes
by repeated duplication
Thank you

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Special type of chromosomes

  • 2. WHAT IS A CHROMOSOME DNA packaged tightly in thread like structures Mainly seen in decondensed form but during cell division in condensed form DNA wrapped around proteins like histone results in nucleosome , thus the complex of DNA plus histones and other structural proteins is called chromatin Chromosome have p or two short arms , q or two large arms These arms are joined together by centromeres , they help to keep chromosomes aligned during the complex process of cell division
  • 3. The two copies of a chromosome are called sister chromatids The sister chromatids are identical to one another and are attached to each other by proteins called cohesins As long as the sister chromatids are connected they are still considered to be one chromosome . However , as soon as they are pulled apart during cell division , each is considered a separate chromosome Telomeres are repetitive stretches of DNA located at the ends of linear chromosomes They protect the ends of chromosomes in a manner similar to the way the tips of shoelaces keep them from unravelling
  • 4. In many types of cells , telomeres lose a bit of their DNA every time a cells divides . Eventually , when all of the telomere DNA is gone , the cell replicate and dies
  • 6.
  • 7. CHROMOSOME  Chromosomes are known as hereditary vehicles They are formed of strands of DNA molecules which contain information for the development of different characteristics and performance of various metabolic activities of the cells The coordination of various function is brought about through the formation of enzymes which are complex protein molecules
  • 8. The information for the synthesis of these protein molecules is contained in the DNA molecules in the sequence of nitrogen bases The sequences of three nitrogen bases that codes for one molecule of a particular amino acid constitutes a triplet codon DNA of a particular cistron tanscribes its m RNA
  • 9. It carries genetic code similar to its DNA It moves out of the nucleus and get attached to the ribosome The t RNA molecule pick specific activated amino acids and recognize the codon on the m RNA by their specific anticodons The amino acids are thus linked together forming a polypeptide chain , which is finally changed into functional protein either singly or by the association of several polypeptide chains
  • 10. SPECIAL TYPES OF CHROMOSOMES In some organisms there are special tissues in which chromosomes undergo structural specializations Such specialized chromosomes includes Giant chromosomes 1. Polytene chromosomes 2. Lampbrush chromosomes B chromosomes/supernumerary chromosomes
  • 11. GIANT CHROMOSOMES Exceptionally enlarged and highly specialized Found during some stages of life cycle of certain cells Two kinds of giant chromosomes
  • 12. ENDOMITOSIS The enormous size is the result of peculiar kind of chromosomal re- duplication called endomitosis or endoduplication It is repeated duplication of chromatids in geometrical progression , without accompanying cell division In this process the DNA and chromatids keep on multiplying in geometrical progression Thus , endomitosis makes the chromosomes multistranded and increases its DNA content nearly 1000 times or more It is common in certain types of cells of plants or animals Examples are human liver cells , the giant abdominal neuron of Aplysia , and macronucleus of ciliates
  • 13. POLYTENE CHROMOSOMES Special types of interphase chromosomes that are large These giant chromosomes are found in the cells of salivary glands of Drosophila and Chironomus larvae and in the cells of fat bodies of larval stages of certain dipterans They were first observed in the salivary glands of Chironomus and hence are called salivary gland chromosomes They are cable like multi stranded giant chromosomes
  • 14. They are also seen in synergids and antipodal cells of ovules of certain angiosperms , intestinal epithelium , malphigian tubules etc. They were first observed by Balbani
  • 15.
  • 16. STRUCTURE The polytene chromosomes presents a distinct pattern of transverse banding It consist of dark coloured bands alternating with light coloured interbands Nearly 85% of the chromosomal DNA is in the dark bands and the remaining 15 % is in the interbands (light) Bands are mostly heterochromatic, and the interbands are euchromatic
  • 17. It is assumed that the band region is formed by the merging of chromomeres of adjoining chromatids through condensation and localized super coiling of chromatin filaments The bands are specific for a particular chromosome and banding pattern is almost similar in both the homologous chromosomes of a pair Therefore during meiosis the pairing between homologous chromosomes is band to band Each band consists of genes that can code for more than one protein hence polygenic
  • 18.
  • 19.
  • 20. Each band is believed to contain tissue specific genes Each gene in the band may have multiple copies which are not transcriptionally active all the time On the other hand , interbands are believed to contain house keeping genes , which are constantly transcribed and translated into products necessary for the cell The structure of giant chromosomes is modified in certain regions such that one or more specific bands enormously enlarge and bulge out , forming local swellings , called chromosome puffs They are formed by the uncoiling of chromatin filaments
  • 21. Puffs are transcriptionally active expansions or extensions of chromatin So they are active centres of the synthesis and accumulation of RNAs In some cases , in addition to RNA , extra DNA is also producing during puffing Such puffs are the sites of specific gene amplification and are responsible for differentiation and development In some puffs , chromatin filaments are drawn out as a series of lateral loops , known as BALBIANI rings
  • 22.
  • 23. There are four categories of chromosome puffs Stage specific puffs Tissue specific puffs Constitutive puffs Environmentally induced puffs Puffing is a cyclic and reversible process At definite times , puffs appear , grow and finally disappear to repeat the whole cycle over and over again
  • 24. Puffing involves the regular succession of four major events Excessive accumulation of acidic proteins Detachment of the DNA bound basic proteins to expose the DNA for transcription Despiralisation and decondensation of chromatin Active synthesis and storage of RNAs Puffing is mainly initiated during accumulation of acidic proteins ,it is also shown that insect moulting hormone called ecdysone induces puffing
  • 25. Puffs and Balbiani rings are regarded as the active centres for DNA duplication and RNA synthesis Hence puffing is interpreted as a manifestation of gene expression Since active DNA duplication occurs in puffs , they may contain heavy accumulation of redundant and repetitive DNA sequences These are the main characteristics of polytene chromosome present in dipteran
  • 26. In case of polytene chromosomes in ciliates they doesn't have neither contain puffs , and Balbiani rings nor do they show any sign of transcriptional activity In them fully formed chromosomes first get transected by ‘membranous’ partitions , which appear in interband regions These membranes consist of only a single diffuse layer of proteins , which accompanies polytenization of chromosomes Then , each band and the adjacent interband get completely enclosed within a membrane , forming a vesicle
  • 27. Thus a series of vesicles are formed all along the chromosome The vesicle stage would be followed by the shrinkage of chromosome The transection of chromosome , the formation of vesicles and the shrinkage of the chromosome are associated with a progressive reduction in DNA content Nearly 85-90-% of the DNA is degraded to acid soluble products , that are permanently lost from the chromosome Soon after degradation and elimination of DNA , vesicles disappear The small amount of DNA that still remains and undergoes
  • 28.
  • 29. LAMPBRUSH CHROMOSOMES Longest chromosomes of all In oocytic nuclei of those animal which have large yolky eggs , the prophase of first meiotic division is extremely extended During this phase the oocytes grow and synthesis nutrition for the future embryo In them , the chromosomes become greatly enlarged and assume unusual configuration A large number of loops projects out from the chromatid axis , giving it a lampbrush appearance . Hence are called lampbrush chromosomes
  • 30. The lampbrush chromosomes are bivalents , each consisting of two chromatids These persist during the prolonged diplotene phase of first meiotic prophase First observed by Flemming (1882) and described by Ruckert (1892) They are seen in diplotene phase of insects , sharks , amphibians , reptiles and birds The lampbrush chromosomes in the oocytes of salamanders are the largest of all known chromosomes
  • 31. STRUCTURE A lampbrush chromosome consists of a central axis and a paired series of loop like lateral extensions The central axis consists of two bivalent homologous chromosomes , each with two chromatids , so altogether 4 chromatids are present They are held together through contact points or chiasmata The chromatids are drawn out into paired lateral loops ,so central axis extend to the lateral loops as loop axis Loop axis is only a single chromatid of one of the
  • 32. Lateral loops contain bundles of sub-microscopic fibrils Both the central axis and the loop axis are formed of deoxyribonucleoprotein The loop axis may be coated with a matrix of RNA and proteins Lateral loop contain a fully extended DNA duplex ,they are believed to be formed of uncoiling of sister chromatids , making their DNA available for transcription Lateral loops are the active centres for RNA synthesis
  • 33. Each loop may contain one or more transcription unit or transcriptons Most of the newly synthesized RNA molecules associate with proteins and form a ribonucleoprotein (RNP) matrix  m RNA is also associated development of zygote The chromosomal axis may contain paired series of granular chromomeres , from were loop axes extend Usually 1-9 loops may arise from each chromomere Small swellings , without loops , may be present towards the end of the central axis ,they represent the telomeres Each bivalent may contain a loopless swelling also it represents the centromere
  • 34.
  • 35.
  • 36. There are to main hypothesis regarding lampbrush chromosomes According to Callen and Lyod - master and slave hypothesis , each loop axis is polygenic , with repetitive DNA sequences and multiple copies of genes The centromere is believed to contain the master copy of each gene (master gene) , and the loop axis contains its duplicate copies (slave genes ). Only master gene take part in transcriptional activity
  • 37.
  • 38. According to spinning out and retraction hypothesis , a chromomere is a fully transcribed gene from end to end by spinning out a transient loop The new loop material spins out on one side of a chromomere at the thin end of loop and returns to a condensed stage on the other side after completing the synthesis of RNA These are associated with the rapid synthesis of yolk (deutoplasmic) and RNA , protein in the maturing ovum These disappear by the end of first prophase when chromosomes become thick and more condensed
  • 39.
  • 40. B CHROMOSOMES OR SUPERNUMERARY CHROMOSOMES Accessory , aberrant or redundant chromosomes Extra copies of normal chromosomes Not homologous to normal chromosomes and are not essential Normally they are highly heterochromatic They are present in many species of animals and flowering plants like maize , rye ,some ants ,some grasshoppers etc. Their increased presence in individual organisms produce no marked phenotypic effects
  • 41. They are often lost or gained in an individual organisms Some features include; Smaller in size , heterochromatic ,allocyclic and telocentric or acrocentric Exhibit structural polymorphism among cells and tissues of same organism Genetic effects is less compared to other chromosome Present in large amount affect fertility and vigour Relatively unstable , get eliminated due to lagging and non – disjunction Non – mendelian inheritance No chiasmata pairing
  • 42. Appreciable quantity of highly repetitive DNA with very low cytosine and guanine content More amount of histone and lesser protein content Two main groups ; Mitotically stable B chromosome whose number is same in the cells of an individual organism Mitotically unstable B chromosome whose number is different in different cells of an organism
  • 43. Effects of B chromosome Delay the flowering time of plants Adversely affect the plant character like height , weight etc. Suppress or promote meiotic pairing The current concept is that B chromosome might have formed from small fragments through the clustering of highly repetitive and heteropycnotic satellite DNA and other structural re-arrangements They eventually become as large as other chromosomes by repeated duplication