5. 
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







8. 

o
o






11. 
o
o
o




12. 







16. 
o
o
o








23. 
o
o
o





26. 



28. 






29. 




32. 

















33. A
ArcGIS .................................................................................6
B
bioinformatics.....................................................................6
C
cartography.........................................................................6
chart display................................................................ 25-27
type..............................................................................24
colour ..........................................................................25
data..............................................................................27
cladogram.........................................................................28
colour map..................................................................26, 27
configuring................................................................6, 8, 10
software ........................................................................6
R...................................................................................10
console.......................................... 11, 12, 15, 18, 19, 21, 22
creating.................................................................23, 24, 28
bar chart ................................................................23, 24
data trees ....................................................................28
pie chart...........................................................23, 24, 30
csv...............................................................................17, 31
D
data analysis .........................................................23, 24, 32
data retrieval ....................................................................32
downloading .......................................................................9
GenGIS...........................................................................9
R.....................................................................................9
E
Excel..................................................................................17
F
FAQs..................................................................................32
file types ...........................................................................17
Arc/Info ASCIIGRID ......................................................17
csv................................................................................17
ESRI Shape ...................................................................17
GeoTIFF........................................................................17
gtm ..............................................................................17
G
geographic axis................................................................. 14
geophylogenies ................................................................ 23
GIS ...................................................................6, 7, 9, 19, 31
gtm............................................................................. 17, 31
H
habitat parameters ............................................................ 6
I
intended audience ............................................................. 6
L
load ...........................................6, 17, 18, 19, 20, 21, 22, 32
location files................................................................ 21
sequence files ............................................................. 21
tree files ...................................................................... 22
location files......................................................7, 17, 21, 23
M
map layers............................................................ 15, 19, 30
baselayers ................................................................... 30
feature layers.............................................................. 30
tileset layers................................................................ 30
map files..........................................7, 13, 16, 17, 20, 21, 30
map resolution................................................................. 21
menu ..............3, 6, 10, 11, 12, 13, 21, 23, 25, 26, 27, 28, 29
molecular data ................................................................... 6
N
navigation widget......................................11, 12, 15, 18, 19
Newick file.................................................................. 17, 31
P
phylogram ........................................................................ 28
plugins...........................................................6, 9, 13, 23, 32
data analysis.................................................... 23, 24, 32
data retrieval............................................................... 32
population comparison ...................................................... 6
project.......................................................6, 7, 9, 16, 21, 29

34. R
RAM ..................................................................................21
raster .................................................. 14, 16, 17, 18, 19, 31
S
sequence files ...................................................7, 17, 21, 23
sequencing..........................................................................6
session ............................................ 7, 10, 13, 14, 18, 19, 20
status bar..........................................................3, 11, 12, 15
structure panel ............................. 11, 12, 15, 20, 21, 28, 30
study ............................................... 7, 14, 17, 20, 21, 22, 32
system requirements........................................................30
Windows........................................................................9
Mac OS X .......................................................................9
T
toolbar .......................................... 11, 12, 14, 18, 19, 21, 22
tree ......................................7, 14, 15, 16, 17, 21, 22, 28, 32
troubleshooting ..........................................................29, 30
U
UAC .................................................................................. 10
user interface ..............................................................11-15
console............................................................ 11, 12, 15
menu............................................................... 11, 12, 13
navigation widget............................................ 11, 12, 15
status bar ........................................................ 11, 12, 15
structure panel................................................ 11, 12, 15
toolbar ............................................................ 11, 12, 14
viewport................................................................ 11, 12
V
vector ..................................3, 14, 16, 17, 18, 19, 20, 21, 31
Viewport...........11, 12, 13, 15, 18, 19, 20, 24, 25, 26, 27, 28
W
Windows 7........................................................................ 10
Windows Vista.................................................................. 10