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A Tale of Two Labs Unzipping DNA and Molecular Motors
Microtubules
Kinesin
Slide preparation
Osmolytes
Part 2 DNA Unzipping
Unzipping DNA Components: Unzipping construct Optical Tweezers DNA to unzip Optional: proteins
We can unzip anything F F For plot below: Red Line – protein bound to DNA Black Line – naked DNA Black Dotted Line- predictions of protein locations Arrows – missing protein locations Unzipping can detect: Naked DNA “sequence” Changes to DNA sequence proteins bound to DNA And other possible structures
Shotgun DNA Mapping Algorithm matches unzipped random digestion fragments to library of simulated unzipping fragments Initial data is based on yeast genome Library of Simulated Curves Experimental Force Correct Match

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KochLab Summary

  • 1. A Tale of Two Labs Unzipping DNA and Molecular Motors
  • 6. Part 2 DNA Unzipping
  • 7. Unzipping DNA Components: Unzipping construct Optical Tweezers DNA to unzip Optional: proteins
  • 8. We can unzip anything F F For plot below: Red Line – protein bound to DNA Black Line – naked DNA Black Dotted Line- predictions of protein locations Arrows – missing protein locations Unzipping can detect: Naked DNA “sequence” Changes to DNA sequence proteins bound to DNA And other possible structures
  • 9. Shotgun DNA Mapping Algorithm matches unzipped random digestion fragments to library of simulated unzipping fragments Initial data is based on yeast genome Library of Simulated Curves Experimental Force Correct Match