Using Arabidopsis thaliana Phenyl propan-omics Tools To Address Euphorbiaceae Wood Qualities : Biswapriya Biswavas Misra, Ph.D.; 18th August, 2012

1. Using Arabidopsis thaliana
Phenyl propan-omics Tools To
Address Euphorbiaceae Wood
Qualities
Biswapriya Biswavas Misra, Ph.D.
CCB
18th August, 2012

2. Wood Characteristics in Euphorbiaceae at a Glance
Ricinus communis Manihot esculenta Hevea brasiliensis
Stem TS Stem TS Stem TS

3. List of Core Genes Involved in Lignin Biosynthesis
&
Phenylpropanoid Metabolism in Plants

4. General Biosynthetic Scheme of
Phenylpropanoid Biosynthesis in Plants
Sequenced Genomes & PP Biosynthesis
Pathway Orthologs in Numbers

5. Overview of Plant Metabolic Pathway Sharing:
Manihot esculenta [Euphorbiaceae],
Arabidopsis thaliana [Brassicaceae] and
Populus trichocarpa [Salicaceae]

6. Overview of Phenylpropanoid & Lignin Biosynthetic Pathway Genes [ONLY Shared
Orthologs]
Arabidopsis thaliana, Populus trichocarpa, Manihot esculenta & Ricinus communis

7. Mapped Proteins in
Phenylpropanoid Biosynthesis for Ricinus communis

8. Mapped Proteins in
Phenylpropanoid Biosynthesis for Populus trichocarpa

9. List of Core Genes Involved in Phenylpropanoid Metabolism in Arabidopsis thaliana

10. List of Core Genes Involved in Phenylpropanoid Metabolism in Arabidopsis thaliana

11. List of Core Genes Involved in Phenylpropanoid Metabolism in Manihot esculenta

12. List of Core Genes Involved in Phenylpropanoid Biosynthesis
in Ricinus communis

13. List of Core Genes Involved in Phenylpropanoid Biosynthesis
in Ricinus communis

14. List of Core Genes Involved in Phenylpropanoid Metabolism in Populus trichocarpa

15. Distribution of Core Genes Involved in Lignin Biosynthesis &
Phenylpropanoid Metabolism on Arabidopsis thaliana Chromosomes
[Model Herb !!!]

16. Gene Ontology – Cellular Compartment for Arabidopsis thaliana orthologs

17. Gene Ontology – Molecular Function for Arabidopsis thaliana orthologs

18. Gene Ontology – Biological Process for Arabidopsis thaliana orthologs

19. Gene Ontology – Cellular
Compartment for Arabidopsis
thaliana orthologs

20. Gene Ontology – Molecular Function for Arabidopsis thaliana orthologs

21. Gene Ontology – Biological Process for Arabidopsis thaliana orthologs

22. Interaction Networks for Arabidopsis thaliana orthologs- 2 Clusters

23. Tag Clouds Based on GO Terms for Arabidopsis thaliana orthologs

24. List of GO Terms- Biological Process- Arabidopsis thaliana orthologs

25. Tree Map for GO Terms- Biological Process- Arabidopsis thaliana orthologs

26. Interactive Graph for GO Terms- Biological Process- Arabidopsis thaliana
orthologs

27. Scatter Plot for GO Terms- Biological Process- Arabidopsis thaliana orthologs

28. Tree Map for GO Terms- Cellular Component Arabidopsis thaliana orthologs

29. Interactive Graph for GO Terms- Cellular Component
Arabidopsis thaliana orthologs

30. Scatter Plot for GO Terms- Cellular Component
Arabidopsis thaliana orthologs

31. Tree Map for GO Terms- Molecular Function
Arabidopsis thaliana orthologs

32. Interactive Graph for GO Terms- Molecular Function
Arabidopsis thaliana orthologs

33. Interactive Graph for GO Terms- Molecular Function
Arabidopsis thaliana orthologs

34. Clustering of 4CL Functionality and Co-relation
to GO Terms in Arabidopsis thaliana orthologs

35. Clustering of Entire Repertoire of Gene’s Functionality and Co-relation
to GO Terms in Arabidopsis thaliana orthologs

36. Clustering of PAL Functionality and Co-relation
to GO Terms in Arabidopsis thaliana orthologs

37. GO-FAT Analysis for Biological Process in Arabidopsis thaliana Orthologs

38. GO-FAT Analysis for Molecular Function in Arabidopsis thaliana Orthologs

39. GO-FAT Analysis for Cellular Component in Arabidopsis thaliana Orthologs

40. GO-SLIM Analysis for Arabidopsis thaliana Orthologs

41. GO-SLIM Analysis for Arabidopsis thaliana Orthologs

42. GO-SLIM Analysis for Arabidopsis thaliana Orthologs

43. GO-SLIM Analysis for Arabidopsis thaliana Orthologs

44. Tissue Specificity of Arabidopsis thaliana Orthologs –Evidence-Based

45. PIR-Superfamily Annotation of Arabidopsis thaliana Orthologs

46. KEGG Pathway Annotation of Arabidopsis thaliana Orthologs

47. EC Number Annotation of Arabidopsis thaliana Orthologs
Panther Family Annotation of Arabidopsis thaliana Orthologs

48. SP Comment Annotation of Arabidopsis thaliana Orthologs

49. Thank You
Note: Study is based solely on Publicly available Databases,
Platforms/ Softwares, Sequences, Codes, Programs and
Information and are exclusively GENERATED.
Appropriate sources are thanked.
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