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Classification
•    From a common ancestor, 3 domains developed.
  These include Eukarya, Archaea, and Bacteria. From
  each of these domains, there are different phylum.
 The phylum under Eukarya is the Eukaryotes.
 The phylums under Archaea include Korarchaotes,
  Euryarchaeotes, Crenarchaeotes, and Nanoarchaeotes.
 The phylums under domain bacteria include
  Proteobacteria, Chlamydias, Spirochetes,
  Cyanobacteria, and Gram- positive bacteria.
• Korarchaeum cryptofilum
 These archaea have only been found in high
  temperature hydrothermal environments, particularly
  hot springs.
 They have only been found in very small numbers.
 Research on the gene sequences of these organisms
  indicates that they are very closely related, although
  still unique, from Crenarchaeotes and
  Euryarchaeotes.
• Methanococcus jannischii
 This is a thermophilic methanogenic archaea,
  meaning that it thrives at high temperatures and
  produces methane.
 This archaea was the first to have its complete genome
  sequenced.
 When the genome was sequenced, it became evident
  that it was very unique and helped with the argument
  that there are 3 domains instead of 2.
• Sulfolobus solfataricus
 The origins for DNA replication for this organism were
  identified in 2004.
 The results showed that the organism contained 2
  origins in its genome. This was the first prokaryote to
  have evidence of more than one origin for its DNA.
 Today, it is used to study DNA replication in archaea.
• Nanoarchaeum equitans
 This organism was discovered in 2002 and is
  considered a thermophile.
 It must be in contact with other cells to survive.
 Scientists still debate whether or not it is a living
  organism.
 However, if it proves to be, it would be the smallest
  living organism on the planet, whose cells have a
  diameter of 400 nanometers and have a genome of
  only 490, 885 nucleotides long.
• Escherichia coli
 This organism is often abbreviated E. Coli.
 It is a rod shaped bacteria that is found in the lower
  intestine of warm blooded animals.
 Although most E. Coli is harmless, certain strands of it
  can be dangerous and cause food poisoning
• Salmonella enterica
 This organism is a rod shaped, flagellated bacteria.
 It is a facultative anaerobe, meaning that it can live
  with or without oxygen.
 It is known to infect cattle and poultry, and then when
  people eat the infected meat, they develop a condition
  called salmonellosis.
 Raw eggs can also contain the bacteria, and so this is
  why people are often cautioned before they consume
  foods containing raw egg.
• Chlamydia trachomatis
 This is an obligate intracellular pathogen, meaning
  that it can grow and reproduce in its host’s cell.
 It causes complications such as urethritis, proctitis,
  trachoma, and infertility.
 Trachoma is a major condition associated with this
  bacteria, which is an infection of the eye.
• Chlamydia muridarum
 This was originally considered to be chlamydia
  trachomatis.
 However, the difference is that chlamydia trachomatis
  affects only humans, while chlamydia muridarum
  affects the family Muridae.
 This family includes species such as mice and
  hamsters.
• Borrelia burgdorferi
 This bacteria mainly exists in North America.
  However, it has appeared, although more rarely, in
  Europe.
 It is the cause of Lyme Disease, which is carried by
  ticks.
 Borrelia burgdorferi is one of the few pathogens that
  can survive without iron.
 It was the 3rd microbial genome ever sequenced.
• Treponema pallidum
 This bacteria is associated with the diseases of syphilis,
  bejel, pinta, and yaws.
 They are gram- negative, meaning that they have an
  outer membrane, but cannot be seen on a Gram
  stained smear because they are too skinny to be seen
  under a light microscope.
• Prochlorococcus marinus
 They are the smallest known photosynthetic
  organisms.
 In comparing a marine cyanobacteria with eukaryotic
  algae, the difference in numbers of genes is
  astounding. While eukaryotic algae has more than
  10,000 genes, this species contains only roughly 2,000.
 It is estimated that 20% of the Earth’s oxygen comes
  from these creatures.
 They are also essential to food chains in the ocean.
• Prochloron didemni
 This is a unicellular photosynthetic organism found
  mainly in coral reefs.
 It is theorized in the endosymbiotic theory that these
  organisms are precursors to the photosynthetic parts
  of eukaryotes, although this is still highly debated.
• Actinomyces israelii
 This is known as the “most misdiagnosed disease”
  because doctors often do not catch it until the later
  stages.
 It affects the vagina, colon and mouth.
 One of the most common diseases associated with the
  bacteria is Oral- cervicofacial disease, in which the
  infected person has a lumpy, but painless jaw.
 Another common disease is thoracic disease, although
  this is commonly misdiagnosed as a neoplasm.
•    Streptomyces achromogenes
 This bacteria is grown under conditions of 28 degrees
  Celsius in yeast and malt extract with glucose.
 It was the original source of a drug intended to help
  treat pancreatic cancer called, “streptozoticus”
• Streptomyces griseus
 This bacteria is most commonly found in the soil.
 It is a well-known producer of antibiotics, and this is
  the first bacterium to ever produce an antibiotic.
 It has also been recently discovered as an efficient
  water purifier.

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Bacteria and archaea example organisms

  • 1.
  • 2. Classification • From a common ancestor, 3 domains developed. These include Eukarya, Archaea, and Bacteria. From each of these domains, there are different phylum.  The phylum under Eukarya is the Eukaryotes.  The phylums under Archaea include Korarchaotes, Euryarchaeotes, Crenarchaeotes, and Nanoarchaeotes.  The phylums under domain bacteria include Proteobacteria, Chlamydias, Spirochetes, Cyanobacteria, and Gram- positive bacteria.
  • 3.
  • 4. • Korarchaeum cryptofilum  These archaea have only been found in high temperature hydrothermal environments, particularly hot springs.  They have only been found in very small numbers.  Research on the gene sequences of these organisms indicates that they are very closely related, although still unique, from Crenarchaeotes and Euryarchaeotes.
  • 5. • Methanococcus jannischii  This is a thermophilic methanogenic archaea, meaning that it thrives at high temperatures and produces methane.  This archaea was the first to have its complete genome sequenced.  When the genome was sequenced, it became evident that it was very unique and helped with the argument that there are 3 domains instead of 2.
  • 6. • Sulfolobus solfataricus  The origins for DNA replication for this organism were identified in 2004.  The results showed that the organism contained 2 origins in its genome. This was the first prokaryote to have evidence of more than one origin for its DNA.  Today, it is used to study DNA replication in archaea.
  • 7. • Nanoarchaeum equitans  This organism was discovered in 2002 and is considered a thermophile.  It must be in contact with other cells to survive.  Scientists still debate whether or not it is a living organism.  However, if it proves to be, it would be the smallest living organism on the planet, whose cells have a diameter of 400 nanometers and have a genome of only 490, 885 nucleotides long.
  • 8.
  • 9. • Escherichia coli  This organism is often abbreviated E. Coli.  It is a rod shaped bacteria that is found in the lower intestine of warm blooded animals.  Although most E. Coli is harmless, certain strands of it can be dangerous and cause food poisoning
  • 10. • Salmonella enterica  This organism is a rod shaped, flagellated bacteria.  It is a facultative anaerobe, meaning that it can live with or without oxygen.  It is known to infect cattle and poultry, and then when people eat the infected meat, they develop a condition called salmonellosis.  Raw eggs can also contain the bacteria, and so this is why people are often cautioned before they consume foods containing raw egg.
  • 11. • Chlamydia trachomatis  This is an obligate intracellular pathogen, meaning that it can grow and reproduce in its host’s cell.  It causes complications such as urethritis, proctitis, trachoma, and infertility.  Trachoma is a major condition associated with this bacteria, which is an infection of the eye.
  • 12. • Chlamydia muridarum  This was originally considered to be chlamydia trachomatis.  However, the difference is that chlamydia trachomatis affects only humans, while chlamydia muridarum affects the family Muridae.  This family includes species such as mice and hamsters.
  • 13. • Borrelia burgdorferi  This bacteria mainly exists in North America. However, it has appeared, although more rarely, in Europe.  It is the cause of Lyme Disease, which is carried by ticks.  Borrelia burgdorferi is one of the few pathogens that can survive without iron.  It was the 3rd microbial genome ever sequenced.
  • 14. • Treponema pallidum  This bacteria is associated with the diseases of syphilis, bejel, pinta, and yaws.  They are gram- negative, meaning that they have an outer membrane, but cannot be seen on a Gram stained smear because they are too skinny to be seen under a light microscope.
  • 15. • Prochlorococcus marinus  They are the smallest known photosynthetic organisms.  In comparing a marine cyanobacteria with eukaryotic algae, the difference in numbers of genes is astounding. While eukaryotic algae has more than 10,000 genes, this species contains only roughly 2,000.  It is estimated that 20% of the Earth’s oxygen comes from these creatures.  They are also essential to food chains in the ocean.
  • 16. • Prochloron didemni  This is a unicellular photosynthetic organism found mainly in coral reefs.  It is theorized in the endosymbiotic theory that these organisms are precursors to the photosynthetic parts of eukaryotes, although this is still highly debated.
  • 17. • Actinomyces israelii  This is known as the “most misdiagnosed disease” because doctors often do not catch it until the later stages.  It affects the vagina, colon and mouth.  One of the most common diseases associated with the bacteria is Oral- cervicofacial disease, in which the infected person has a lumpy, but painless jaw.  Another common disease is thoracic disease, although this is commonly misdiagnosed as a neoplasm.
  • 18. Streptomyces achromogenes  This bacteria is grown under conditions of 28 degrees Celsius in yeast and malt extract with glucose.  It was the original source of a drug intended to help treat pancreatic cancer called, “streptozoticus”
  • 19. • Streptomyces griseus  This bacteria is most commonly found in the soil.  It is a well-known producer of antibiotics, and this is the first bacterium to ever produce an antibiotic.  It has also been recently discovered as an efficient water purifier.