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Hi ! Good Morning ! I am Mycobacterium tuberculosis.
LABORATORY DIAGNOSIS OF  MYCOBACTERIUM TUBERCULOSIS
NEED FOR ACCURATE & EARLY DIAGNOSIS OF TUBERCULOSIS. ,[object Object],[object Object],[object Object],[object Object],[object Object]
LABORATORY DIAGNOSIS MAY BE ESTABLISHED BY: ,[object Object],[object Object],[object Object],[object Object],[object Object]
LABORATORY DIAGNOSIS CONTD. ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
SPECIMENS  COLLECTED ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
SPUTUM EXAMINED BY : ,[object Object],[object Object],[object Object],[object Object]
Acid-fast bacilli
ZN Smear evaluation & AFB Report (Grading of smear) 4+ 01 10 or more 3+ 01 01 – 09  2+ 10 01 – 09 1+ 100 01 – 09 Doubtful; Repeat smear 300 01 – 02 AFB Not seen 300 0 Report No. of  OIF No. of AFB
Indications for Culture  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Decontamination Procedures ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
PETROFF’S METHOD ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Processing of sputum with CPC Method ,[object Object],[object Object],[object Object],[object Object]
MYCOBACTERIAL  CULTURE ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Specimen Sterile Non - Sterile Centrifuge & use sediment Liquefaction  (N-acetyl-L- cystein) Decontamination NaOH Neutralization Buffer or H2O Centrifugation > 3000 X g Screen by AFB smear & inoculate media (one liquid & one solid) FLOW CHART OF SPECIMEN PROCESSING FOR ISOLATION OF MYCOBACTERIA
FLOW CHART CONTD. Screen by AFB smear & inoculate media (one liquid & one solid) Liquid Medium Solid Media MGIT BACTEC SEPTI-CHEK CMS Incubate At 37 ºC For 6 wks Incubate At 37ºC For 6 wks Incubate inverting At 37ºC For 8 wks Incubate At 37ºC For 6 wks Fluoresc- -ence detected Growth Index >10 Colonies  or turbidity Growth detected Confirm by AFB smear Reinoculate on Solid media L J L J with RNA LJ with Pyruvic acid Incubate At 37ºC For 8 wks If growth Confirm on AFB smear
Reading and Reporting ,[object Object],[object Object],[object Object],[object Object],[object Object]
Culture Media : Solid ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Slow growth 3-4 wk
24-hr generation time AFB AFB AFB 24 hr
MYCOBACTERIAL COLONIES ON SOLID MEDIA
Colonies growing on media
Laboratory diagnosis ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Flow Chart Identification of Tubercle bacilli & related Growth on LJ Medium Rapid growth within 7 days Growth on MacConkey Agar Aryl-sulphataes test Slow Growth Niacin test ,[object Object],[object Object],+ ve M. smegmatis ,[object Object],[object Object],- ve Type of growth + ve M. tuberculosis + ve M. Fortuitum complex Pigment Scanty Smooth Flat Colonies In Light Group I Photochromogens In Dark Group II Scotochromogens No Pigment Group III Non - Chromogens - ve BCG + ve M. bovis M.Kansasi M.intermedium M.Szulgai M.scrofulaceum M.Avium complex M.gastri
Other Culture Methods ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
BACTEC CONTINUOUS MONITORING SYSTEM
BLOOD CULTURE BOTTLES FOR BACTEC 9240,9120,9050.
SEPTI - CHECK
Radiolabeled palmitic acid AFB *C___ *C___ *C___ *C___
Detect growth with CO 2 AFB AFB AFB AFB AFB *CO 2 *CO 2 *C___ *C___
BIOCHEMICAL REACTIONS: + - +/- - - - - - - - M  Africanum + - - +/- - - - - - - M  bovis + + + +/- - + - + - + M tuberculosis UREASE TEST PYRAZI-NAMIDASE  TSET GROWTH ON TCH TELLURI--TE REDUCTION TEST TWEEN 80 HYDRO--LYSIS TSET PEROX---IDASE TEST HOT CATAL---ASE TEST NITRATE REDUC---TION TEST ARYL-SULPH---ATASE TEST NIACIN TEST SPECIES
BIOCHEMICAL REACTIONS
BIOCHEMICAL REACTIONS
BIOCHEMICAL REACTIONS
BIOCHEMICAL REACTIONS
ANIMAL INOCULATION ,[object Object],[object Object],[object Object],[object Object],[object Object]
ANTIGEN PROTEIN DETECTION ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
CHROMATOGRAPHIC ANALYSIS ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Why Measure Interferon-  ? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
What is  Quanti-FERON ® -TB Gold ,[object Object],[object Object],[object Object]
Quanti-FERON ® -TB Gold – Scientific Basis ,[object Object],[object Object],[object Object],[object Object]
Interferon Gamma Release
Whole Blood IFN-   Assay QuantiFERON-TB Test Cellestis ESAT-6 CFP 10 Mitogen Control TMB COLOR Stage 1 Whole Blood Culture Stage 2 IFN-gamma ELISA Nil Control Incubate  ->  INF-   from sensitized T-cells Draw blood  + heparin Aliquot blood & add antigen Harvest plasma from above settled cells Measure [ IFN-  ] in ‘Sandwich’  ELISA Computerized interpretation
Species Specificity of ESAT-6 and CFP-10
QFT Assay
In Vivo  and  In Vitro  Diagnostic Tests Antigen presenting cell Memory T-cell Presentation of mycobacterial antigens IFN-  IFN-  IL-8, etc. IL-8, etc. TNF-  TNF- 
Results and Interpretation MTB infection status cannot be determined as a result of impaired immunity and/or incorrect performance of the test INDETERMINATE No ESAT-6 or CFP-10 responsiveness detected M. tuberculosis  unlikely NEGATIVE ESAT-6 and/or CFP-10 responsiveness detected M. tuberculosis  infection likely POSITIVE INTERPRETATION RESULT
QFT and TST ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
T-Spot. TB  :  “Six   easy Steps” Oxford Immunotec Nil Control Positive Control Infection Infection
ENZYME LINKED IMMUNOSORBENT   SPOT (ELISPOT) TEST. ,[object Object],[object Object],[object Object]
USING ELISA TO DETECT 38kDA MYCOBACTERIAL ANTIGEN ,[object Object],[object Object],[object Object],[object Object],[object Object]
Mantoux Tuberculin Skin Test ,[object Object],[object Object],[object Object],[object Object],[object Object]
Administering the Tuberculin Skin Test ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Reading the Tuberculin Skin Test ,[object Object],[object Object],[object Object],[object Object],[object Object]
Classifying the Tuberculin Reaction ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Classifying the Tuberculin  Reaction (cont.) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Classifying the Tuberculin  Reaction (cont.) ,[object Object],[object Object],[object Object]
BCG and TST (1) ,[object Object],[object Object],[object Object],[object Object]
BCG and TST (2) ,[object Object],[object Object],[object Object],Farhat M et al, Int J Tuberc Lung Dis 2006; 10: 1192-204
Nucleic acid amplification for mycobact. diagnosis Genus specific protocols Targeting genes code for  16S rRNA   65KDa  hsp  M.TB Complex specific  is  6110 Other targets: Genes encoding  38 KDa MPB 64  mtp 40 PMT 64 Methods: Target amplification    - PCR (TMA, LCR, SDA  or  signal amplification EG:  QB amplification) PFYFFER G.E.  J.INF. 1999,  39 ,  21-26. TC/ICM 30
MOLECULAR TECHNIQUES TO DETECT M.TUBERCULOSIS - 1 ,[object Object],[object Object],[object Object],[object Object],[object Object]
Mycobacteria (AFB) sample U AFB U
Extract 16S RNA U U 16S RNA
Probe for specific 16S RNA U U 16S RNA Probe Probe
Probe remains in sample U U 16S RNA Probe
Detector binds to probe ******* U ******* U 16S RNA Probe
Detector remains in sample ******* U U 16S RNA Probe
Detector identifies 16S RNA ******* VVVVV U U 16S RNA Probe
MOLECULAR TECHNIQUES TO DETECT M.TUBERCULOSIS - 2 ,[object Object],[object Object]
Conventional method for diagnosis of drug resistant M.tuberculosis ,[object Object],[object Object]
SENSITIVITY TESTS ,[object Object],[object Object],[object Object]
Various Mycobacterial gene mutations involved in drug resistance. ,[object Object],[object Object],[object Object],[object Object],[object Object]
Molecular diagnostic methods for drug resistant M.tuberculosis ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Other PCR based tests: ,[object Object],[object Object]
Diagnosis of drug resistance with Mycobacteriophages ,[object Object],[object Object]
Antituberculosis Drugs Currently in Use ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],PREVENTION CHALLENGES WHO Jan 07 “ BCG vaccine should not be used in children known to be  HIV-infected”
THANK YOU

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Lab diag. tb

  • 1. Hi ! Good Morning ! I am Mycobacterium tuberculosis.
  • 2. LABORATORY DIAGNOSIS OF MYCOBACTERIUM TUBERCULOSIS
  • 3.
  • 4.
  • 5.
  • 6.
  • 7.
  • 9. ZN Smear evaluation & AFB Report (Grading of smear) 4+ 01 10 or more 3+ 01 01 – 09 2+ 10 01 – 09 1+ 100 01 – 09 Doubtful; Repeat smear 300 01 – 02 AFB Not seen 300 0 Report No. of OIF No. of AFB
  • 10.
  • 11.
  • 12.
  • 13.
  • 14.
  • 15. Specimen Sterile Non - Sterile Centrifuge & use sediment Liquefaction (N-acetyl-L- cystein) Decontamination NaOH Neutralization Buffer or H2O Centrifugation > 3000 X g Screen by AFB smear & inoculate media (one liquid & one solid) FLOW CHART OF SPECIMEN PROCESSING FOR ISOLATION OF MYCOBACTERIA
  • 16. FLOW CHART CONTD. Screen by AFB smear & inoculate media (one liquid & one solid) Liquid Medium Solid Media MGIT BACTEC SEPTI-CHEK CMS Incubate At 37 ºC For 6 wks Incubate At 37ºC For 6 wks Incubate inverting At 37ºC For 8 wks Incubate At 37ºC For 6 wks Fluoresc- -ence detected Growth Index >10 Colonies or turbidity Growth detected Confirm by AFB smear Reinoculate on Solid media L J L J with RNA LJ with Pyruvic acid Incubate At 37ºC For 8 wks If growth Confirm on AFB smear
  • 17.
  • 18.
  • 20. 24-hr generation time AFB AFB AFB 24 hr
  • 23.
  • 24.
  • 25.
  • 27. BLOOD CULTURE BOTTLES FOR BACTEC 9240,9120,9050.
  • 29. Radiolabeled palmitic acid AFB *C___ *C___ *C___ *C___
  • 30. Detect growth with CO 2 AFB AFB AFB AFB AFB *CO 2 *CO 2 *C___ *C___
  • 31. BIOCHEMICAL REACTIONS: + - +/- - - - - - - - M Africanum + - - +/- - - - - - - M bovis + + + +/- - + - + - + M tuberculosis UREASE TEST PYRAZI-NAMIDASE TSET GROWTH ON TCH TELLURI--TE REDUCTION TEST TWEEN 80 HYDRO--LYSIS TSET PEROX---IDASE TEST HOT CATAL---ASE TEST NITRATE REDUC---TION TEST ARYL-SULPH---ATASE TEST NIACIN TEST SPECIES
  • 36.
  • 37.
  • 38.
  • 39.
  • 40.
  • 41.
  • 43. Whole Blood IFN-  Assay QuantiFERON-TB Test Cellestis ESAT-6 CFP 10 Mitogen Control TMB COLOR Stage 1 Whole Blood Culture Stage 2 IFN-gamma ELISA Nil Control Incubate -> INF-  from sensitized T-cells Draw blood + heparin Aliquot blood & add antigen Harvest plasma from above settled cells Measure [ IFN-  ] in ‘Sandwich’ ELISA Computerized interpretation
  • 44. Species Specificity of ESAT-6 and CFP-10
  • 46. In Vivo and In Vitro Diagnostic Tests Antigen presenting cell Memory T-cell Presentation of mycobacterial antigens IFN-  IFN-  IL-8, etc. IL-8, etc. TNF-  TNF- 
  • 47. Results and Interpretation MTB infection status cannot be determined as a result of impaired immunity and/or incorrect performance of the test INDETERMINATE No ESAT-6 or CFP-10 responsiveness detected M. tuberculosis unlikely NEGATIVE ESAT-6 and/or CFP-10 responsiveness detected M. tuberculosis infection likely POSITIVE INTERPRETATION RESULT
  • 48.
  • 49. T-Spot. TB  : “Six easy Steps” Oxford Immunotec Nil Control Positive Control Infection Infection
  • 50.
  • 51.
  • 52.
  • 53.
  • 54.
  • 55.
  • 56.
  • 57.
  • 58.
  • 59.
  • 60. Nucleic acid amplification for mycobact. diagnosis Genus specific protocols Targeting genes code for 16S rRNA 65KDa hsp M.TB Complex specific is 6110 Other targets: Genes encoding 38 KDa MPB 64 mtp 40 PMT 64 Methods: Target amplification - PCR (TMA, LCR, SDA or signal amplification EG: QB amplification) PFYFFER G.E. J.INF. 1999, 39 , 21-26. TC/ICM 30
  • 61.
  • 63. Extract 16S RNA U U 16S RNA
  • 64. Probe for specific 16S RNA U U 16S RNA Probe Probe
  • 65. Probe remains in sample U U 16S RNA Probe
  • 66. Detector binds to probe ******* U ******* U 16S RNA Probe
  • 67. Detector remains in sample ******* U U 16S RNA Probe
  • 68. Detector identifies 16S RNA ******* VVVVV U U 16S RNA Probe
  • 69.
  • 70.
  • 71.
  • 72.
  • 73.
  • 74.
  • 75.
  • 76.
  • 77.

Editor's Notes

  1. NEJM 7/19/01
  2. There are two commercial assays available in the world. The first of these, called the QuantiFERON TB test Gold is available in the United States. The test works like this. First blood is drawn into an heparinized tube. The cells are separated and stimulated with various antigens including positive and negative controls. After incubation, sensitized T cells produce interferon that can be harvested and measured using an ELISA assay. The results are interpreted by a computer program.
  3. When we measure a person’s TST result, we are measuring and indirect result of inflammation caused by injection of the PPD into the skin. In this figure, you can see that when an antigen presenting cell such as a macrophage encounters a T-cell, the lymphocyte produces a number of cytokines such as TNF-alpha, interferon-gamma, and various interleukins. These cytokines cause swelling and induration that is measured with a ruler. It is now possible to measure these cytokines directly from the blood. Interferon-gamm is the best cytokine to measure because it is produced in large amounts, is stable and thus easy to measure. Importantly it is also a critical cytokine in the immune response to mycobacterial infections.