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Biodiversity Informatics ,[object Object],National Geographic News, 05/21/08  Tuatara Libraries ?????
encyclopedists ,[object Object],[object Object],[object Object]
encyclopedists ,[object Object],[object Object],[object Object],[object Object],[object Object]
Serine Molecule Biodiversity Heritage  Library Synthesis Center Field Museum Informatics Marine Biological Laboratory & MOBOT Education &  Outreach Smithsonian/Harvard Secretariat Smithsonian
[object Object],[object Object]
HOW to build this enterprise ,[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object]
Biodiversity Heritage Library Mission: Provide Open Access to Biodiversity Literature Goals: ,[object Object],[object Object]
 
 
BHL
Internet Archive Scribe: Boston
How big is the  Biodiversity domain? ,[object Object],[object Object],[object Object],[object Object]
Classes of Texts ,[object Object],[object Object],[object Object],[object Object],[object Object]
Where are we? ,[object Object],[object Object],[object Object],[object Object],[object Object]
Carolus Linnaeus,  “father of modern taxonomy” ,[object Object],[object Object],[object Object],[object Object],Royal Science Academy of Sweden, portrait
“ All accumulated information of a species is tied to a scientific name, a name that serves as a link between what has been learned in the past and what we today add to the body of knowledge.” ~ Grimaldi& Engel, 2005, Evolution of the Insects
[object Object],[object Object],[object Object],[object Object],From T.E. Glover, The Fishes of Southwestern Japan, c.1870
The challenge for contemporary DIGITAL libraries Goal: Use one name to find the content for all names
Names – the only universal metadata for Biology   Names offer a logical way to search for and index content ,[object Object],[object Object],[object Object]
Who is affected by these problems? Libraries Publishers Museums Federal Agencies
Serious challenges in federated environments One organism 4 scientific names 4 maps We want one map
Reconciliation – linking alternative names for the same organism A query initiated with any name, can be expanded to all names and will unify data associated with each
 
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Taxonomic intelligence is the inclusion of taxonomic practices, skills and knowledge within informatics services to manage information about organisms
[object Object],[object Object],[object Object],Specimen distribution data from remote sources
Taxonomic Intelligence ,[object Object],[object Object],[object Object],[object Object],[object Object]
uBio ,[object Object],[object Object],[object Object],[object Object],[object Object]
uBioRSS Taxonomically Intelligent RSS Feed Aggregator
MBL WHOI Library – Woods Hole authors’ publications
MBL WHOI Library – Woods Hole species publications
Taxonomically intelligent scientific text parsing
 
 
[object Object],[object Object]
Taxonomic intelligence works miracles ,[object Object],[object Object],[object Object],[object Object]
Acknowledgments Catherine Norton Patrick Leary David Remsen Diane Rielinger David Patterson Neil Sarkar Gerald Weissmann A.W. Mellon Foundation Alfred P. Sloan Foundation John D. & Catherine T. MacArthur Foundation Internet Archive Christopher Freeland Tom Garnett Martin Kalfatovic Graham Higley BHL & EOL Teams
 

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Special Libraries Associatin

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  • 4. Serine Molecule Biodiversity Heritage Library Synthesis Center Field Museum Informatics Marine Biological Laboratory & MOBOT Education & Outreach Smithsonian/Harvard Secretariat Smithsonian
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  • 11. BHL
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  • 17. “ All accumulated information of a species is tied to a scientific name, a name that serves as a link between what has been learned in the past and what we today add to the body of knowledge.” ~ Grimaldi& Engel, 2005, Evolution of the Insects
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  • 19. The challenge for contemporary DIGITAL libraries Goal: Use one name to find the content for all names
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  • 21. Who is affected by these problems? Libraries Publishers Museums Federal Agencies
  • 22. Serious challenges in federated environments One organism 4 scientific names 4 maps We want one map
  • 23. Reconciliation – linking alternative names for the same organism A query initiated with any name, can be expanded to all names and will unify data associated with each
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  • 29. uBioRSS Taxonomically Intelligent RSS Feed Aggregator
  • 30. MBL WHOI Library – Woods Hole authors’ publications
  • 31. MBL WHOI Library – Woods Hole species publications
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  • 37. Acknowledgments Catherine Norton Patrick Leary David Remsen Diane Rielinger David Patterson Neil Sarkar Gerald Weissmann A.W. Mellon Foundation Alfred P. Sloan Foundation John D. & Catherine T. MacArthur Foundation Internet Archive Christopher Freeland Tom Garnett Martin Kalfatovic Graham Higley BHL & EOL Teams
  • 38.  

Editor's Notes

  1. Living Dinosaur is the fastest-evolving animal…Tuatara – looks hasn’t changed much .. But DNA says differently.. They can adapt faster than bears, horses, and many other warm- blooded vertebrates 200 million years old… outside the same… inside is changing its DNA to adapt… and live through global warming, etc. Libraries look the same but they have evolved… !