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Elizabeth Brown
Scholarly Communications and Library Grants Officer
Binghamton University Libraries
October 18,2012
   What is an NSF Data Management Plan?
    How and why was it created?

   Why are Libraries a part of data management?

(Short Break)

   Creating and Implementing NSF Data Management Plans

   Preserving Research Data after a project is completed
To:
   Understand current NSF and government data
    policies requirements.
   Be aware of research support services within the
    Libraries.
   Locate and use various resources to develop data
    management plans (DMPs) for NSF proposal(s).
   Write a comprehensive DMP for NSF proposal(s).
   Identify and plan for long-term preservation of
    research data from funded projects.
Storing Research Data “Forever”
Serge Goldstein
Associate CIO & Director of Academic Services
Princeton University
Fall 2010 Coalition for Networked Information Meeting
URL: http://www.youtube.com/watch?v=fQ-YEcV1k1A
 Cyberinfrastructure: computing resources &
    networks, services, & people
   Data management: technical processing and preparation of
    data for analysis
   Data curation: selection of data for preservation and adding
    value for current and future use
   Data citation: mechanisms to enable easy reuse and
    verification, track impact of data, and create structures to
    recognize and reward researchers (DataCite)
   Data sharing: must take into account ethical and legal issues;
    a spectrum with many options
Source: Heather Coates and Kristi Palmer, Data management plans & planning: Meeting the NSF
Requirement, March 7, 2012
URL: http://www.slideshare.net/goldenphizzwizards/meeting-the-nsf-dmp-requirement-20120307-final
URL: http://www.nsf.gov/bfa/dias/policy/dmp.jsp
Source: http://blogs.library.ucla.edu/dmptool/2012/10/09/data-now-recognized/
Source: http://www.nsf.gov/open/;
Source: http://www.whitehouse.gov/open
      Open Access
          Open Educational Tools
          Open Standards
          Open Science
          Open Source



         Dorothea Salo, Battle of the Opens, Book of Trogool, March 15, 2010



http://en.wikipedia.org/wiki/File:Benjamin_Franklin_-_Join_or_Die.jpg
Houghton, J.W. (2011). "The costs and potential benefits of alternative scholarly publishing models"
Information Research, 16(1) paper 469. [Available at http://InformationR.net/ir/16-1/paper469.html]
http://altmetrics.org/manifesto/
Source: http://www.whitehouse.gov/open/around
   Let’s think about it… (discussion)
   Saves time
     Less reorganization for future projects
   Increases efficiency
     Compile and prioritizing data collection(s)
     Anticipate how your data will be used
   Consider data preservation requirements and
    plan for them
   Better aware of funding agency mandates
    and data preservation culture in your field
•Access
•Services
•Cultural Memory
•Preservation




 Sources: http://iteach.wustl.edu/newsletter/spring-2011-newsletter/199; http://news.lib.uchicago.edu/special-
 collections/preservation/; http://www.berfrois.com/2012/03/share-books/
Print Archives, Collections


                                                 Electronic Content, Databases


                                               Research Data

URLs: http://futurepath.org/digital-information-presevation/; http://www.nationalgalleries.org/object/GMA A42/2/GKL1012;
http://metalink.binghamton.edu:8332/V/DIURBR94GJBKS1C3TBKAGBQ19XQQQ4DBVYRJHJKGH2ADLG2D3Y-08701?func=native-
link&resource=BNG05356
NSF Data
Management Plan
Info




  URL: http://library.binghamton.edu/services/scholarly/index.html
Find funder
requirements


Locate sample
plans


Write, edit, revie
w plans

 URL: http://library.binghamton.edu/services/scholarly/NSFdata.html
Copyright
                                                       Terms               Locating   Classroom
                                                                           Owners     exceptions




URL: http://library.lib.binghamton.edu/services/scholarly/copyrightdemystified.html
URL: http://library.lib.binghamton.edu/services/scholarly/index.html
Source: DDI Structural Reform Group. “DDI Version 3.0 Conceptual Model." DDI Alliance. 2004. Accessed on 11 August 2008.
<http://www.icpsr.umich.edu/DDI/committee-info/Concept-Model-WD.pdf>.
URL: https://dmp.cdlib.org/pages/funder_requirements
1. Types of Data
2. Data and Metadata Standards
3. Policies for Access and Sharing
   Data Privacy and Protection
4. Data re-use and re-distribution
5. Data Archiving and Preservation
Expected data. The DMP should describe the types of data, samples, physical collections, software, curriculum materials, or other
       materials to be produced in the course of the project. It should then describe the expected types of data to be retained.
 The Federal government defines ‘data’ in OMB Circular A-110 as:
 Research data is defined as the recorded factual material commonly accepted in the scientific community as necessary to
       validate research findings, but not any of the following: preliminary analyses, drafts of scientific papers, plans for future
       research, peer reviews, or communications with colleagues. This "recorded" material excludes physical objects
       (e.g., laboratory samples). Research data also do not include:
       (A) Trade secrets, commercial information, materials necessary to be held confidential by a researcher until they are
            published, or similar information which is protected under law; and
       (B) Personnel and medical information and similar information the disclosure of which would constitute a clearly
            unwarranted invasion of personal privacy, such as information that could be used to identify a particular person in a
            research study.
 PIs should use the opportunity of the DMP to give thought to matters such as:
       • The types of data that their project might generate and eventually share with others, and under what conditions
       • How data are to be managed and maintained until they are shared with others
       • Factors that might impinge on their ability to manage data, e.g. legal and ethical restrictions on access to non-
            aggregated data
       • The lowest level of aggregated data that PIs might share with others in the scientific community, given that community’s
            norms on data
       • The mechanism for sharing data and/or making them accessible to others
       • Other types of information that should be maintained and shared regarding data,




Source: http://www.nsf.gov/sbe/SBE_DataMgmtPlanPolicy.pdf
“This research project will generate data resulting from sensor recordings (i.e. earth
    pressures, accelerations, wall deformation and displacement and soil
    settlement) during the centrifuge experiments. In addition to the
    raw, uncorrected sensor data, converted and corrected data (in engineering
    units), as well as several other forms of derived data will be produced. Metadata
    that describes the experiments with their materials, loads, experimental
    environment and parameters will be produced. The experiments will also be
    recorded with still cameras and video cameras. Photos and videos will be part of
    the data collection.”
 “A total storage demand of 50 GB is anticipated at the University of Michigan, and
     50 GB at Auburn University.”
 “Based on the previous viscoelastic turbulent channel flow simulations, the amount
    of resulting binary data is estimated around 40 TB per year. Some text format
    data files are also required for post-processing in the laboratory and are
    anticipated to be around 1 TB per year.”
 “In one year, we will perform approximately 2 to 3 simulations. This means ~100 3D
     plots, 30 restart files, 1000 EUV, X-ray and LASCO-like images, 10 satellite
     files, 1000 2D plot files (total of about 150 GB of data per year).”

Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
“The data, samples, and materials expected to be produced will consist of laboratory
    notebooks, raw data files from experiments, experimental analysis data files,
    simulation data, microscopy images, optical images, LabView acquisition programs,
    and quantum dot superlattice nanowire thermoelectric samples.... each of these data
    is described below:
A. Laboratory notebooks: The graduate student and PI will record by hand any
    observations, procedures, and ideas generated during the course of the research.
B. Experimental raw data files: These files will consist of ASCII text that represents data
    directly collected from the various electrical instruments used to measure the
    thermoelectric properties of the superlattice nanowire thermoelectric devices.
C. Experimental analysis data files: These files will consist of spreadsheets and plots of
    the raw data mentioned in Part A. The data in these files will have been manipulated
    to yield meaningful and quantitative values for the device efficiency and ZT. The
    analysis will be performed using best practice and acceptable methods for calculating
    device efficiency and ZT.
D. Simulation data: These data will represent the results from commercially available
    simulation and modeling software to model the quantum confinement.
E. Microscopy images: Images of the proposed silicon nanostructures will be generated
    by scanning electron microscopy (SEM), transmission electron microscopy (TEM) at
    high resolution to quantify wire diameter and roughness, and atomic force
    microscopy (AFM).

Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
Data formats and dissemination. The DMP should describe data
     formats, media, and dissemination approaches that will be
     used to make data and metadata available to others. Policies
     for public access and sharing should be described, including
     provisions for appropriate protection of
     privacy, confidentiality, security, intellectual property, or other
     rights or requirements. Research centers and major
     partnerships with industry or other user communities must
     also address how data are to be shared and managed with
     partners, center members, and other major stakeholders.


Source: http://www.nsf.gov/sbe/SBE_DataMgmtPlanPolicy.pdf
Period of data retention. SBE is committed to
     timely and rapid data distribution. However, it
     recognizes that types of data can vary widely
     and that acceptable norms also vary by
     scientific discipline. It is strongly
     committed, however, to the underlying
     principle of timely access, and applicants
     should address how this will be met in their
     DMP statement.
Source: http://www.nsf.gov/sbe/SBE_DataMgmtPlanPolicy.pdf
“The Dublin Core will be used as the standard for metadata. The
  metadata set mainly consists of fifteen elements, including
  title, creator, subject, description, publisher, contributor, date, type, f
  ormat, identifier, source, language, relation, coverage, and rights.
  These elements have been ratified as both national (i.e., ANSI/NISO
  Standard Z39.85) and international standards (i.e., ISO Standard
  15836). Further, they describe resources such as
  text, video, audio, and data files. These standard formats will be used
  in our study.”
“For each code made available, a user's manual will be provided with
   instructions for compiling the source codes, installing and running the
   codes, formulating input data streams, and visualizing the output.
   Documentation will be in PDF format.”


Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
“Verilog, SPICE, and MATLAB files generated will be processed and submitted to FTP servers
   as .mat files with TXT documentation. The data will be distributed in several widely used
   formats, including ASCII, tab-delimited (for use with Excel), and MAT format. Instructional
   material and relevant technical reports will be provided as PDF. Digital video data files
   generated will be processed and submitted to the FTP servers in MPEG-4 (.mp4) and .avi
   formats. Variables will use a standardized naming convention consisting of a
   prefix, root, suffix system.”

“Plasma image data will be RGB colored JPG or TIFF format with resolution determined by the
    camera. Video data will be RGB colored AVI format.”

“Images from the scanning electron microscopes (SEMs) and focused ion beam workstations
   (FIBs) are saved in tagged image file format (TIFF), which is readily readable by a wide
   variety of imaging and processing applications.”




Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
III. Policies for access and sharing and provisions for appropriate protection/privacy
     As detailed in the project description, the CARE platform in intended to be a research cloud
      service that provides analytical middleware for use in analyzing health data. During the
      project, access will be limited to project team member and invited expert stakeholders through a
      password protected website. Commencing with Task 5 (month 26), means for access by the
      broader research community will be implemented. At that time, the project team will determine
      whether there is a need for initiating access charges, which may be appropriate for securing the
      longer terms sustainability of the CARE platform and analysis tools.
     All of the data that will be utilized are publicly available data sets that have been de-identified by
      public agencies and have passed their standards for privacy protection and assurance so that no
      individually identifiable data is provided. The datasets to be utilized within this project and other
      intellectual property have been released without restriction.
     Over the course of the study, the project team will meet with both the Community Health
      Institute and the SafeRoadMaps/CERS team to arrive at a data-sharing agreement for
      postproject utilization of their data. Such an agreement will provide a model for not only this
      partnership, but for licensing the CARE Platform analytics for use by other health data sets.




Source: http://rci.ucsd.edu/_files/DMP%20Example%20Chaitan%20Baru%20SDSC.pdf
“After uploading the data into the NEES Project Warehouse
  and allowing public access, all data will be available for re-
  use and re-distribution with proper acknowledgement of
  their originators.”
“Researchers and practitioners in diverse fields will be able to
  readily reuse and redistribute shared data. Terms of use will
  include the prohibition of commercial commercial use of the
  work – modifications of the work will be allowed with the
  proper citations.”
“The simulation code will be developed in C and provided to the
  public in source code format for non-commercial use under
  GNU General Public License (GPL).”
Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
“Before data is stored, it will be stripped of all institutional and individual
  identifiers to ensure confidentiality by staff of the Center following
  procedures developed by the researchers.”
“Audio files of interviews will be stored on a password protected secure
  server during the study and for two years after, and destroyed
  subsequently.”
“Exceptions to shared data include proprietary DTE GIS utility
   information (for security reasons) and software code of commercial
   interest to the project's GOALI partners or identified licensees. Both
   exceptions are permitted by the ENG DMP policy.... The research
   team will however develop a set of 3D GIS datasets for distribution
   the public. These datasets will represent non-existent buried
   infrastructure and will only be useful for the evaluation of the other
   research products.”
Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
IV. Policies and provisions for re-use, re-distribution
As noted in the project description, policies for provision
  and re-use will be developed as part of the research
  project. It is anticipated that there will be
  considerable interest in the platform and tools within
  the research and practice community, including
  academic researchers, health research agencies, and
  cloud service providers, among others. The need for
  such a tool was identified during a recent NSF
  sponsored symposium on Health
  Cyberinfrastructure, which was conducted by the PIs.
Source: http://rci.ucsd.edu/_files/DMP%20Example%20Chaitan%20Baru%20SDSC.pdf
Data storage and preservation of access. The
   DMP should describe physical and cyber
   resources and facilities that will be used for the
   effective preservation and storage of research
   data. These can include third party facilities
   and repositories.




Source: http://www.nsf.gov/sbe/SBE_DataMgmtPlanPolicy.pdf
V. Plans for archiving and Preservation of access
 The project website and service will contain all appropriate information
   and documentation for using the CARE platform and tool for health
   research discovery and analysis. The site will also contain all
   references, research papers, and related products developed throughout
   the course of the project.
 The San Diego Supercomputer Facility at UC San Diego will host the data
   throughout the research project and provide a minimum of three years of
   online access beyond the completion of the project. Data storage will be
   performed at the nominal rates charged by SDSC to any project using
   the facility. These are relatively modest (~$1000/TB) and can be borne
   ahead of time for the 3-year period. Should the CARE platform not
   extend beyond the three years (post grant), the data could then be
   archived at SDSC at even lower cost. A decision would have to be made
   at that point in time regarding how exactly to archive the data, and on
   paying for the archival storage.

Source: http://rci.ucsd.edu/_files/DMP%20Example%20Chaitan%20Baru%20SDSC.pdf
“For archiving, the data along with any related publications
  will be deposited in Libra, the UVA archival system, with
  an appropriate licensing statement. DOIs will be attached
  to all data stored from this project. Since the current
  preservation plan for Libra is indefinite data
  storage, preservation of access is assured.”
“Materials to be publicly shared will be stored with the Deep
  Blue repository, a service of the UM Libraries that provides
  deposit access and preservation services. Deposited items
  will be assigned a persistent URL that will be registered
  with the Handle System for assigning, managing, and
  resolving persistent identifiers (‘handles’) for digital
  objects and other Internet resources.”
Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
   What are your goals?
   Who needs access and when?
   When/if can data be shared/distributed?
   Prepare for future funder mandates
   Plan beyond individual PI/grant projects
•   Campus Copyright policy
 •   Collaborator institution copyright and
     ownership policies, informal agreements
 •   Patent and provenance issues
 •   International copyright considerations
 •   Post-project data retention requirements
 •   Post-employment data agreements

URL: http://www2.binghamton.edu/academics/provost/faculty-staff-handbook/handbook-xii.html
Survey sample:
                                                                     308 campus researchers with
                                                                     externally sponsored projects or
                                                                     submitted proposals (2009-
                                                                     2011); 91 survey respondents

Source: Binghamton University Research Faculty Survey, June 2011, Jim Wolf, Director of Academic Computing (ret.)
Source: Jim Wolf, Director of Academic Computing (ret.), June 2011
Data Accessibility                                                 Data Preservation Timeframe
    50
                                                                      60
    45
    40
    35                                                                50
    30
    25                                                                40
    20                                     access granted to
    15                                     individuals                30                                                          forever
    10                                     openly available to all                                                                3-7 yrs
     5                                                                20
     0                                                                                                                            <3 yrs
                                           proprietary
                                                                      10

                                           private                    0
                                                                           Local research ITS storage   Library   Disciplinary
                                                                            group server                archive    repository
                                                                                                                  (e.g., ICPSR)




Source: Research Faculty Survey, Jim Wolf, Director of Academic Computing (ret.), June 2011
   Create consistent, standardized metadata
   Perform regular file fixity and format checks
   Identify, update and migrate file formats
   Mitigate and eliminate file degradation
   Provide storage space, controlled access and
    an “exit strategy”
Thankó verù mucè foò á lovelù luncheoî anä
        somå splendiä views® Wå •imaginå yoõ no÷
        iî Indiá anä wondeò iæ yoõ arå listeninç tï
        somå oæ thå •samå Indianó witè whoí wå
        talkeä yearó ago® Thå artistó anä
        economistó •werå quitå remarkable¬ buô
        thå politicaì scientistó useä tï talë abouô
        •atomiã bombó foò Indiá witè eager¬
        burninç eyeó whilå beinç verù carefuì •noô tï
        kilì anù insects® (Severaì haä theiò beardó
        covereä iî whitå •silk so that no insect would
        get caught and be stifled there.)




Sources: Hoover Institution Library and Archives Blog, Nov. 18, 2011; http://timbrison.wordpress.com/2011/06/04/bit-
rot-rides-again/
Media Deterioration and Format Obsolescence Demonstrate that
“Backups” are Inadequate for Long-Term Preservation




Sources: http://oldcomputers.net/macintosh.html; http://www.classiccmp.org/dunfield/pc/index.htm
   Build content from one project to the next

   Create a set of policies based on current best
    practices and funder requirements

   Refine data
    collection, access, use, distribution, and
    preservation policies over time
Elizabeth Brown
LS-2504C
(607) 777-4882
ebrown@binghamton.edu

Slideshare: http://www.slideshare.net/ebrown

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Data management plans archeology class 10 18 2012

  • 1. Elizabeth Brown Scholarly Communications and Library Grants Officer Binghamton University Libraries October 18,2012
  • 2. What is an NSF Data Management Plan? How and why was it created?  Why are Libraries a part of data management? (Short Break)  Creating and Implementing NSF Data Management Plans  Preserving Research Data after a project is completed
  • 3. To:  Understand current NSF and government data policies requirements.  Be aware of research support services within the Libraries.  Locate and use various resources to develop data management plans (DMPs) for NSF proposal(s).  Write a comprehensive DMP for NSF proposal(s).  Identify and plan for long-term preservation of research data from funded projects.
  • 4.
  • 5. Storing Research Data “Forever” Serge Goldstein Associate CIO & Director of Academic Services Princeton University Fall 2010 Coalition for Networked Information Meeting URL: http://www.youtube.com/watch?v=fQ-YEcV1k1A
  • 6.  Cyberinfrastructure: computing resources & networks, services, & people  Data management: technical processing and preparation of data for analysis  Data curation: selection of data for preservation and adding value for current and future use  Data citation: mechanisms to enable easy reuse and verification, track impact of data, and create structures to recognize and reward researchers (DataCite)  Data sharing: must take into account ethical and legal issues; a spectrum with many options Source: Heather Coates and Kristi Palmer, Data management plans & planning: Meeting the NSF Requirement, March 7, 2012 URL: http://www.slideshare.net/goldenphizzwizards/meeting-the-nsf-dmp-requirement-20120307-final
  • 8.
  • 12. Open Access  Open Educational Tools  Open Standards  Open Science  Open Source Dorothea Salo, Battle of the Opens, Book of Trogool, March 15, 2010 http://en.wikipedia.org/wiki/File:Benjamin_Franklin_-_Join_or_Die.jpg
  • 13. Houghton, J.W. (2011). "The costs and potential benefits of alternative scholarly publishing models" Information Research, 16(1) paper 469. [Available at http://InformationR.net/ir/16-1/paper469.html]
  • 16. Let’s think about it… (discussion)
  • 17. Saves time  Less reorganization for future projects  Increases efficiency  Compile and prioritizing data collection(s)  Anticipate how your data will be used  Consider data preservation requirements and plan for them  Better aware of funding agency mandates and data preservation culture in your field
  • 18.
  • 19. •Access •Services •Cultural Memory •Preservation Sources: http://iteach.wustl.edu/newsletter/spring-2011-newsletter/199; http://news.lib.uchicago.edu/special- collections/preservation/; http://www.berfrois.com/2012/03/share-books/
  • 20. Print Archives, Collections Electronic Content, Databases Research Data URLs: http://futurepath.org/digital-information-presevation/; http://www.nationalgalleries.org/object/GMA A42/2/GKL1012; http://metalink.binghamton.edu:8332/V/DIURBR94GJBKS1C3TBKAGBQ19XQQQ4DBVYRJHJKGH2ADLG2D3Y-08701?func=native- link&resource=BNG05356
  • 21. NSF Data Management Plan Info URL: http://library.binghamton.edu/services/scholarly/index.html
  • 22. Find funder requirements Locate sample plans Write, edit, revie w plans URL: http://library.binghamton.edu/services/scholarly/NSFdata.html
  • 23. Copyright Terms Locating Classroom Owners exceptions URL: http://library.lib.binghamton.edu/services/scholarly/copyrightdemystified.html
  • 25.
  • 26. Source: DDI Structural Reform Group. “DDI Version 3.0 Conceptual Model." DDI Alliance. 2004. Accessed on 11 August 2008. <http://www.icpsr.umich.edu/DDI/committee-info/Concept-Model-WD.pdf>.
  • 28. 1. Types of Data 2. Data and Metadata Standards 3. Policies for Access and Sharing Data Privacy and Protection 4. Data re-use and re-distribution 5. Data Archiving and Preservation
  • 29. Expected data. The DMP should describe the types of data, samples, physical collections, software, curriculum materials, or other materials to be produced in the course of the project. It should then describe the expected types of data to be retained. The Federal government defines ‘data’ in OMB Circular A-110 as: Research data is defined as the recorded factual material commonly accepted in the scientific community as necessary to validate research findings, but not any of the following: preliminary analyses, drafts of scientific papers, plans for future research, peer reviews, or communications with colleagues. This "recorded" material excludes physical objects (e.g., laboratory samples). Research data also do not include: (A) Trade secrets, commercial information, materials necessary to be held confidential by a researcher until they are published, or similar information which is protected under law; and (B) Personnel and medical information and similar information the disclosure of which would constitute a clearly unwarranted invasion of personal privacy, such as information that could be used to identify a particular person in a research study. PIs should use the opportunity of the DMP to give thought to matters such as: • The types of data that their project might generate and eventually share with others, and under what conditions • How data are to be managed and maintained until they are shared with others • Factors that might impinge on their ability to manage data, e.g. legal and ethical restrictions on access to non- aggregated data • The lowest level of aggregated data that PIs might share with others in the scientific community, given that community’s norms on data • The mechanism for sharing data and/or making them accessible to others • Other types of information that should be maintained and shared regarding data, Source: http://www.nsf.gov/sbe/SBE_DataMgmtPlanPolicy.pdf
  • 30. “This research project will generate data resulting from sensor recordings (i.e. earth pressures, accelerations, wall deformation and displacement and soil settlement) during the centrifuge experiments. In addition to the raw, uncorrected sensor data, converted and corrected data (in engineering units), as well as several other forms of derived data will be produced. Metadata that describes the experiments with their materials, loads, experimental environment and parameters will be produced. The experiments will also be recorded with still cameras and video cameras. Photos and videos will be part of the data collection.” “A total storage demand of 50 GB is anticipated at the University of Michigan, and 50 GB at Auburn University.” “Based on the previous viscoelastic turbulent channel flow simulations, the amount of resulting binary data is estimated around 40 TB per year. Some text format data files are also required for post-processing in the laboratory and are anticipated to be around 1 TB per year.” “In one year, we will perform approximately 2 to 3 simulations. This means ~100 3D plots, 30 restart files, 1000 EUV, X-ray and LASCO-like images, 10 satellite files, 1000 2D plot files (total of about 150 GB of data per year).” Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
  • 31. “The data, samples, and materials expected to be produced will consist of laboratory notebooks, raw data files from experiments, experimental analysis data files, simulation data, microscopy images, optical images, LabView acquisition programs, and quantum dot superlattice nanowire thermoelectric samples.... each of these data is described below: A. Laboratory notebooks: The graduate student and PI will record by hand any observations, procedures, and ideas generated during the course of the research. B. Experimental raw data files: These files will consist of ASCII text that represents data directly collected from the various electrical instruments used to measure the thermoelectric properties of the superlattice nanowire thermoelectric devices. C. Experimental analysis data files: These files will consist of spreadsheets and plots of the raw data mentioned in Part A. The data in these files will have been manipulated to yield meaningful and quantitative values for the device efficiency and ZT. The analysis will be performed using best practice and acceptable methods for calculating device efficiency and ZT. D. Simulation data: These data will represent the results from commercially available simulation and modeling software to model the quantum confinement. E. Microscopy images: Images of the proposed silicon nanostructures will be generated by scanning electron microscopy (SEM), transmission electron microscopy (TEM) at high resolution to quantify wire diameter and roughness, and atomic force microscopy (AFM). Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
  • 32. Data formats and dissemination. The DMP should describe data formats, media, and dissemination approaches that will be used to make data and metadata available to others. Policies for public access and sharing should be described, including provisions for appropriate protection of privacy, confidentiality, security, intellectual property, or other rights or requirements. Research centers and major partnerships with industry or other user communities must also address how data are to be shared and managed with partners, center members, and other major stakeholders. Source: http://www.nsf.gov/sbe/SBE_DataMgmtPlanPolicy.pdf
  • 33. Period of data retention. SBE is committed to timely and rapid data distribution. However, it recognizes that types of data can vary widely and that acceptable norms also vary by scientific discipline. It is strongly committed, however, to the underlying principle of timely access, and applicants should address how this will be met in their DMP statement. Source: http://www.nsf.gov/sbe/SBE_DataMgmtPlanPolicy.pdf
  • 34. “The Dublin Core will be used as the standard for metadata. The metadata set mainly consists of fifteen elements, including title, creator, subject, description, publisher, contributor, date, type, f ormat, identifier, source, language, relation, coverage, and rights. These elements have been ratified as both national (i.e., ANSI/NISO Standard Z39.85) and international standards (i.e., ISO Standard 15836). Further, they describe resources such as text, video, audio, and data files. These standard formats will be used in our study.” “For each code made available, a user's manual will be provided with instructions for compiling the source codes, installing and running the codes, formulating input data streams, and visualizing the output. Documentation will be in PDF format.” Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
  • 35. “Verilog, SPICE, and MATLAB files generated will be processed and submitted to FTP servers as .mat files with TXT documentation. The data will be distributed in several widely used formats, including ASCII, tab-delimited (for use with Excel), and MAT format. Instructional material and relevant technical reports will be provided as PDF. Digital video data files generated will be processed and submitted to the FTP servers in MPEG-4 (.mp4) and .avi formats. Variables will use a standardized naming convention consisting of a prefix, root, suffix system.” “Plasma image data will be RGB colored JPG or TIFF format with resolution determined by the camera. Video data will be RGB colored AVI format.” “Images from the scanning electron microscopes (SEMs) and focused ion beam workstations (FIBs) are saved in tagged image file format (TIFF), which is readily readable by a wide variety of imaging and processing applications.” Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
  • 36. III. Policies for access and sharing and provisions for appropriate protection/privacy  As detailed in the project description, the CARE platform in intended to be a research cloud service that provides analytical middleware for use in analyzing health data. During the project, access will be limited to project team member and invited expert stakeholders through a password protected website. Commencing with Task 5 (month 26), means for access by the broader research community will be implemented. At that time, the project team will determine whether there is a need for initiating access charges, which may be appropriate for securing the longer terms sustainability of the CARE platform and analysis tools.  All of the data that will be utilized are publicly available data sets that have been de-identified by public agencies and have passed their standards for privacy protection and assurance so that no individually identifiable data is provided. The datasets to be utilized within this project and other intellectual property have been released without restriction.  Over the course of the study, the project team will meet with both the Community Health Institute and the SafeRoadMaps/CERS team to arrive at a data-sharing agreement for postproject utilization of their data. Such an agreement will provide a model for not only this partnership, but for licensing the CARE Platform analytics for use by other health data sets. Source: http://rci.ucsd.edu/_files/DMP%20Example%20Chaitan%20Baru%20SDSC.pdf
  • 37. “After uploading the data into the NEES Project Warehouse and allowing public access, all data will be available for re- use and re-distribution with proper acknowledgement of their originators.” “Researchers and practitioners in diverse fields will be able to readily reuse and redistribute shared data. Terms of use will include the prohibition of commercial commercial use of the work – modifications of the work will be allowed with the proper citations.” “The simulation code will be developed in C and provided to the public in source code format for non-commercial use under GNU General Public License (GPL).” Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
  • 38. “Before data is stored, it will be stripped of all institutional and individual identifiers to ensure confidentiality by staff of the Center following procedures developed by the researchers.” “Audio files of interviews will be stored on a password protected secure server during the study and for two years after, and destroyed subsequently.” “Exceptions to shared data include proprietary DTE GIS utility information (for security reasons) and software code of commercial interest to the project's GOALI partners or identified licensees. Both exceptions are permitted by the ENG DMP policy.... The research team will however develop a set of 3D GIS datasets for distribution the public. These datasets will represent non-existent buried infrastructure and will only be useful for the evaluation of the other research products.” Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
  • 39. IV. Policies and provisions for re-use, re-distribution As noted in the project description, policies for provision and re-use will be developed as part of the research project. It is anticipated that there will be considerable interest in the platform and tools within the research and practice community, including academic researchers, health research agencies, and cloud service providers, among others. The need for such a tool was identified during a recent NSF sponsored symposium on Health Cyberinfrastructure, which was conducted by the PIs. Source: http://rci.ucsd.edu/_files/DMP%20Example%20Chaitan%20Baru%20SDSC.pdf
  • 40. Data storage and preservation of access. The DMP should describe physical and cyber resources and facilities that will be used for the effective preservation and storage of research data. These can include third party facilities and repositories. Source: http://www.nsf.gov/sbe/SBE_DataMgmtPlanPolicy.pdf
  • 41. V. Plans for archiving and Preservation of access  The project website and service will contain all appropriate information and documentation for using the CARE platform and tool for health research discovery and analysis. The site will also contain all references, research papers, and related products developed throughout the course of the project.  The San Diego Supercomputer Facility at UC San Diego will host the data throughout the research project and provide a minimum of three years of online access beyond the completion of the project. Data storage will be performed at the nominal rates charged by SDSC to any project using the facility. These are relatively modest (~$1000/TB) and can be borne ahead of time for the 3-year period. Should the CARE platform not extend beyond the three years (post grant), the data could then be archived at SDSC at even lower cost. A decision would have to be made at that point in time regarding how exactly to archive the data, and on paying for the archival storage. Source: http://rci.ucsd.edu/_files/DMP%20Example%20Chaitan%20Baru%20SDSC.pdf
  • 42. “For archiving, the data along with any related publications will be deposited in Libra, the UVA archival system, with an appropriate licensing statement. DOIs will be attached to all data stored from this project. Since the current preservation plan for Libra is indefinite data storage, preservation of access is assured.” “Materials to be publicly shared will be stored with the Deep Blue repository, a service of the UM Libraries that provides deposit access and preservation services. Deposited items will be assigned a persistent URL that will be registered with the Handle System for assigning, managing, and resolving persistent identifiers (‘handles’) for digital objects and other Internet resources.” Source: http://deepblue.lib.umich.edu/handle/2027.42/86586
  • 43.
  • 44. What are your goals?  Who needs access and when?  When/if can data be shared/distributed?  Prepare for future funder mandates  Plan beyond individual PI/grant projects
  • 45. Campus Copyright policy • Collaborator institution copyright and ownership policies, informal agreements • Patent and provenance issues • International copyright considerations • Post-project data retention requirements • Post-employment data agreements URL: http://www2.binghamton.edu/academics/provost/faculty-staff-handbook/handbook-xii.html
  • 46. Survey sample: 308 campus researchers with externally sponsored projects or submitted proposals (2009- 2011); 91 survey respondents Source: Binghamton University Research Faculty Survey, June 2011, Jim Wolf, Director of Academic Computing (ret.)
  • 47. Source: Jim Wolf, Director of Academic Computing (ret.), June 2011
  • 48. Data Accessibility Data Preservation Timeframe 50 60 45 40 35 50 30 25 40 20 access granted to 15 individuals 30 forever 10 openly available to all 3-7 yrs 5 20 0 <3 yrs proprietary 10 private 0 Local research ITS storage Library Disciplinary group server archive repository (e.g., ICPSR) Source: Research Faculty Survey, Jim Wolf, Director of Academic Computing (ret.), June 2011
  • 49. Create consistent, standardized metadata  Perform regular file fixity and format checks  Identify, update and migrate file formats  Mitigate and eliminate file degradation  Provide storage space, controlled access and an “exit strategy”
  • 50. Thankó verù mucè foò á lovelù luncheoî anä somå splendiä views® Wå •imaginå yoõ no÷ iî Indiá anä wondeò iæ yoõ arå listeninç tï somå oæ thå •samå Indianó witè whoí wå talkeä yearó ago® Thå artistó anä economistó •werå quitå remarkable¬ buô thå politicaì scientistó useä tï talë abouô •atomiã bombó foò Indiá witè eager¬ burninç eyeó whilå beinç verù carefuì •noô tï kilì anù insects® (Severaì haä theiò beardó covereä iî whitå •silk so that no insect would get caught and be stifled there.) Sources: Hoover Institution Library and Archives Blog, Nov. 18, 2011; http://timbrison.wordpress.com/2011/06/04/bit- rot-rides-again/
  • 51. Media Deterioration and Format Obsolescence Demonstrate that “Backups” are Inadequate for Long-Term Preservation Sources: http://oldcomputers.net/macintosh.html; http://www.classiccmp.org/dunfield/pc/index.htm
  • 52. Build content from one project to the next  Create a set of policies based on current best practices and funder requirements  Refine data collection, access, use, distribution, and preservation policies over time

Notes de l'éditeur

  1. Open Access and other open movements have advocates and they feel strongly about these causes. Like the patriots of the American Revolution, they feel that publishing is broken and only radical change can create change in the system.
  2. Publishers are offering the same content in more ways. This recent UK study shows the more publishing and viewing options available, the less expensive it becomes. This is opposite of our expenditures, where items are becoming more expensive in newer formats.
  3. Scholars, though, also care about the impact of their work, not just how it is published. The Open movement has created more metrics and groups like altmetrics.org that advocate for weblinks, bookmarks and online conversations on research to help measure impact for tenure and promotion decisions.
  4. The open access conversation is focused on the dissemination of research products like peer-reviewed articles and books at the end of the research life cycle, whereas data management planning is most effective when it’s initiated before data collection begins and implemented throughout the research life cycle.