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FROM GENE TO PROTEIN Susheel Dwivedi –www.bioguruindia.com Proteins make the Organism
Overview of the Gene to Protein Concept ,[object Object]
The Dictionary of The Genetic Code
Transcription ,[object Object],[object Object],[object Object],[object Object],[object Object]
Transcription, cont’d. ,[object Object],[object Object],[object Object]
Transcription Initiation
Enhancers and Silencers ,[object Object],[object Object],[object Object],[object Object]
 
mRNA Elongation
Pre-mRNA Processing ,[object Object],[object Object],[object Object]
mRNA SPLICING
Spliceosomes
Are introns necessary? ,[object Object],[object Object],[object Object],[object Object]
Alternate Splicing of Exons ,[object Object]
Introns Early or Late? ,[object Object],[object Object]
Capping and Polyadenylation ,[object Object],[object Object],[object Object]
Translation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Ribosomes ,[object Object],[object Object]
The Nucleolus – Home of Ribosome Assembly
The Nucleolus – Home of Ribosome Assembly ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Transfer RNA (tRNA)
Aminoacyl-tRNA Synthatase An enzyme that adds amino acids to the 3’ end of the free tRNA
Translation Initiation E, P and A sites Each ribosome has a binding site for mRNA and three binding sites for tRNA molecules. The P site holds the tRNA carrying the growing polypeptide chain. The A site carries the tRNA with the next amino acid. Discharged tRNAs leave the ribosome at the E site
Polypeptide Elongation
Polypeptide Elongation, cont’d.
Termination When the stop codon enters the ribosome, a protein called a release factor enters the A site and hydrolyzes the bond between the tRNA in the P site and the last amino acid of the polypeptide chain.  This frees the polypeptide and breaks up the ribosomal subunits.
Elongation ,[object Object],[object Object]
The Dictionary of The Genetic Code
UTRs ,[object Object]
Polyribosomes ,[object Object],[object Object],[object Object]
Polyribosomes in Prokaryotes ,[object Object],[object Object]
Get Help ,[object Object]
Some polypeptides have an ER signal sequence.  The signal sequence is recognized by a Recognition Particle, or SRP.   This is then bound to a receptor.  This complex guides the protein through a channel like region.  It also consists of a docking site for the ribosome.  Bound versus Free Ribosomes and the role of the Endoplasmic Reticulum
Those Funny Bases in tRNA ,[object Object],[object Object],[object Object],[object Object]
Mutations ,[object Object],[object Object]
Substitutions -  Missense mutations   EXAMPLE: sickle-cell disease The replacement of A by T at the 17th nucleotide of the gene for the beta chain of hemoglobin changes the codon GAG (for glutamic acid) to GTG (which encodes valine). Thus the 6th amino acid in the chain becomes valine instead of glutamic acid.  A single base, say an A, becomes replaced by another. Single base substitutions are also called point mutations.
Substitutions – Nonsense Mutations ,[object Object]
Substitutions - Silent mutations ,[object Object]
Insertions and Deletions Extra base pairs may be added (insertions) or removed (deletions) from the DNA of a gene.  This usually causes a shift in the reading frame and changes the amino acid sequence of the protein from that point onward. Frameshifts often create new STOP codons and thus generate nonsense mutations. Perhaps that is just as well as the protein would probably be too garbled anyway to be useful to the cell.
Each mRNA has 3 Reading Frames ,[object Object],[object Object],[object Object]
Mutations: Thymine Dimers ,[object Object],[object Object],[object Object],[object Object]
Thymine Dimers
Xeroderma Pigmentosa ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Wobble Base Pairing ,[object Object],[object Object],[object Object],[object Object],[object Object]
The Wobble Rules Wobble Rules: Read as 5' position in anticodon pairs with 3' position in codon:  G pairs with C or U;  C pairs with G;  A pairs with U;  U pairs with A or G; I pairs with A, U, or C Note that the anticodon position in the tRNA can also have the base  inosine (I), a purine that is not present in the messenger RNA (codon)
Euchromatin ,[object Object],[object Object],[object Object]
Heterochromatin ,[object Object],[object Object]
Euchromatin vs. Heterochromatin
Role of histones ,[object Object],[object Object]
Histone Acetylation ,[object Object],[object Object]
DNA Methylation (CpG sites) ,[object Object],[object Object],[object Object],[object Object]
DNA Methylation ,[object Object],[object Object],[object Object]
Inactive (i) vs. active(a) X ,[object Object],[object Object],[object Object]
Polytene Chromosomes ,[object Object],[object Object],[object Object],[object Object]
Polytene chomosome from the salivary gland of Drosophila melanogaster (stained)
Get more Protein With Your Carbohydrates THE END Susheel Dwivedi –www.bioguruindia.com

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From Gene To Protein (www.bioguruindia.com)

  • 1. FROM GENE TO PROTEIN Susheel Dwivedi –www.bioguruindia.com Proteins make the Organism
  • 2.
  • 3. The Dictionary of The Genetic Code
  • 4.
  • 5.
  • 7.
  • 8.  
  • 10.
  • 13.
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
  • 19. The Nucleolus – Home of Ribosome Assembly
  • 20.
  • 22. Aminoacyl-tRNA Synthatase An enzyme that adds amino acids to the 3’ end of the free tRNA
  • 23. Translation Initiation E, P and A sites Each ribosome has a binding site for mRNA and three binding sites for tRNA molecules. The P site holds the tRNA carrying the growing polypeptide chain. The A site carries the tRNA with the next amino acid. Discharged tRNAs leave the ribosome at the E site
  • 26. Termination When the stop codon enters the ribosome, a protein called a release factor enters the A site and hydrolyzes the bond between the tRNA in the P site and the last amino acid of the polypeptide chain. This frees the polypeptide and breaks up the ribosomal subunits.
  • 27.
  • 28. The Dictionary of The Genetic Code
  • 29.
  • 30.
  • 31.
  • 32.
  • 33. Some polypeptides have an ER signal sequence. The signal sequence is recognized by a Recognition Particle, or SRP.   This is then bound to a receptor.  This complex guides the protein through a channel like region.  It also consists of a docking site for the ribosome. Bound versus Free Ribosomes and the role of the Endoplasmic Reticulum
  • 34.
  • 35.
  • 36. Substitutions - Missense mutations EXAMPLE: sickle-cell disease The replacement of A by T at the 17th nucleotide of the gene for the beta chain of hemoglobin changes the codon GAG (for glutamic acid) to GTG (which encodes valine). Thus the 6th amino acid in the chain becomes valine instead of glutamic acid. A single base, say an A, becomes replaced by another. Single base substitutions are also called point mutations.
  • 37.
  • 38.
  • 39. Insertions and Deletions Extra base pairs may be added (insertions) or removed (deletions) from the DNA of a gene. This usually causes a shift in the reading frame and changes the amino acid sequence of the protein from that point onward. Frameshifts often create new STOP codons and thus generate nonsense mutations. Perhaps that is just as well as the protein would probably be too garbled anyway to be useful to the cell.
  • 40.
  • 41.
  • 43.
  • 44.
  • 45. The Wobble Rules Wobble Rules: Read as 5' position in anticodon pairs with 3' position in codon: G pairs with C or U; C pairs with G; A pairs with U; U pairs with A or G; I pairs with A, U, or C Note that the anticodon position in the tRNA can also have the base inosine (I), a purine that is not present in the messenger RNA (codon)
  • 46.
  • 47.
  • 49.
  • 50.
  • 51.
  • 52.
  • 53.
  • 54.
  • 55. Polytene chomosome from the salivary gland of Drosophila melanogaster (stained)
  • 56. Get more Protein With Your Carbohydrates THE END Susheel Dwivedi –www.bioguruindia.com