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Diagnos(cs	
  and	
  Personalized	
  
Medicine	
  
Dynamics	
  in	
  the	
  Biotechnology	
  and	
  
Life	
  Science	
  Industry	
  
Tuesday,	
  February	
  6,	
  2007	
  
Objec(ves	
  
•  Challenge	
  common	
  wisdom:	
  help	
  you	
  think	
  
•  Prepare	
  you	
  for	
  pitches 	
  
•  Provide	
  basic	
  background	
  
©	
  2013	
  Winton	
  Gibbons	
   2	
  
Topics	
  to	
  Cover	
  
•  Overview	
  of	
  diagnos(c	
  market	
  
•  Nomenclature	
  
•  Marker	
  mining	
  and	
  valida(on	
  
•  Personalized	
  medicine	
  
•  Miscellaneous	
  and	
  Q	
  &	
  A	
  
– Recent,	
  major	
  acquisi(ons	
  
– Point-­‐of-­‐care	
  
©	
  2013	
  Winton	
  Gibbons	
   3	
  
Overall	
  Market	
  Size	
  and	
  Structure	
  
Source:	
  BBC,	
  Amersham	
  and	
  WG	
  analysis	
  
In-vitro
81%
In-vivo
19%
100%=$41.6	
  billion	
  
©	
  2013	
  Winton	
  Gibbons	
   4	
  
IVD	
  Market	
  Size	
  and	
  Structure	
  
$7,997
$6,582
$6,034
$1,861
$1,827
$1,740
$1,295
$1,217
$1,228
$4,088
Diabetes
Infectious Disease
Clinical Chemistry
Hematology
Immunology
Endocrinology
Coagulation
Cancer
Cardiac
Other
Source:	
  BBC	
  and	
  WG	
  analysis	
  
©	
  2013	
  Winton	
  Gibbons	
   5	
  
IVD	
  Market	
  Size	
  and	
  Structure	
  
Source:	
  BBC	
  and	
  WG	
  analysis	
  
US
37%
Europe
35%
Japan
10%
ROW
18%
©	
  2013	
  Winton	
  Gibbons	
   6	
  
IVD	
  Market	
  Size	
  and	
  Structure	
  
Source:	
  BBC	
  and	
  WG	
  analysis	
  
Lab
75%
PST
18%
Ambulatory
7%
©	
  2013	
  Winton	
  Gibbons	
   7	
  
Roche	
  Dominates	
  the	
  IVDs,	
  Especially	
  
A`er	
  GE’s	
  Move	
  
Roche
21%
Abbott (pre GE)
12%
J&J
10%
Bayer (Siemens)
9%
Beckman
7%
Dade
6%
Other
35%
Source:	
  BBC	
  and	
  WG	
  analysis	
  
©	
  2013	
  Winton	
  Gibbons	
   8	
  
Other	
  Thoughts	
  on	
  Industry	
  Structure	
  
•  Top	
  4	
  Diagnos(cs	
  players	
  part	
  of	
  Larger	
  Medical	
  Product	
  Firm	
  (Roche,	
  GE,	
  J&J	
  and	
  
Siemens)	
  
–  Compe((ve	
  Informa(on	
  Spoey	
  
•  Overlap	
  with	
  Life	
  Science	
  firms	
  
–  Diagnos(cs	
  uses	
  much	
  of	
  the	
  same	
  technology	
  as	
  Life	
  Sciences,	
  so	
  a	
  number	
  of	
  
companies	
  straddle	
  both	
  (Beckman,	
  BioRad,	
  Cepheid,	
  Celera	
  and	
  even	
  Roche).	
  
–  However,	
  Diagnos(cs	
  is	
  different	
  due	
  to	
  regulatory,	
  medical	
  prac(ce,	
  reimbursement,	
  
razor	
  /	
  razor	
  blade	
  and	
  larger,	
  diversified	
  players.	
  
•  In-­‐vitro	
  Diagnos(cs	
  is	
  a	
  large	
  ($34	
  billion),	
  but	
  generally	
  	
  grows	
  about	
  the	
  same	
  
rate	
  as	
  nominal	
  GDP;	
  however,	
  there	
  are	
  a	
  few	
  fast-­‐growing	
  sub-­‐sectors	
  and	
  some	
  
niche	
  opportuni(es	
  
–  Molecular	
  diagnos(cs	
  (e.g.,	
  DNA)	
  
–  Blood	
  Glucose	
  
–  Novel	
  protein	
  markers	
  (e.g.,	
  BNP	
  and	
  others)	
  
©	
  2013	
  Winton	
  Gibbons	
   9	
  
M.D.s
Rx firms
Device firms
Dx
Hospitals
Pharmacies
Distribution
Stronger
Poli(cal	
  Power	
  for	
  IVD	
  Firms	
  Typically	
  
is	
  not	
  Strong	
  
©	
  2013	
  Winton	
  Gibbons	
   10	
  
Dimension RxL Max Chemistry/Immunochemistry Analyzer
GeneXpert
Triage
Diagnos(c	
  Instruments	
  Vary	
  in	
  Size	
  
and	
  Complexity	
  	
  
©	
  2013	
  Winton	
  Gibbons	
   11	
  
Large	
  System	
  Purchases	
  Typically	
  
Don’t	
  Depend	
  on	
  Single	
  Markers	
  
• 5- to 6-year repurchase cycle • Labor savings (2/3 of cost)
– Laboratory automation
• 12- to 24-month selling cycle – Ease of use
– Easy maintenance / reliability
•Important analytes on the menu:
Troponin I, HbA1c, BNP/NT-proBNP • Menu should cover 90%+ of volume
high-sensitivity TSH and HCG
Source: William Blair & Company, L.L.C. analysis
Purchasing Behavior for Mainframe Immunodiagnostic Analyzers
©	
  2013	
  Winton	
  Gibbons	
   12	
  
Some	
  Myths	
  in	
  Diagnos(cs	
  
•  Best	
  test	
  
–  Standardiza(on	
  /	
  installed	
  based—VHS	
  versus	
  Betamax	
  (e.g.,	
  Troponin	
  I	
  versus	
  T;	
  BNP	
  versus	
  NT-­‐proBNP?)	
  
–  Plaoorm	
  migra(on	
  (NA	
  to	
  IA	
  to	
  CC)	
  
–  Trial	
  and	
  error	
  (e.g.,	
  sta(ns)	
  
•  POC	
  
–  Cost	
  center	
  versus	
  total	
  cost	
  
–  Lab	
  Director	
  power	
  
–  MD	
  office	
  
•  Work	
  flow	
  
•  Profit	
  (Stark	
  II—July	
  26)	
  
•  Pharmacogenomics	
  
–  Metabolizing	
  enzymes	
  (CYP450s)	
  
•  Yes	
  
•  Drug-­‐drug	
  interac(ons	
  
–  Individualized	
  medicine	
  
•  Not	
  always	
  
•  Except	
  certain	
  cancers	
  or	
  orphans	
  
•  Drugs	
  to	
  target	
  big	
  markets,	
  just	
  using	
  new	
  biology	
  
©	
  2013	
  Winton	
  Gibbons	
   13	
  
Nomenclature	
  
•  Sensi(vity	
  
–  Percent	
  with	
  disease	
  who	
  test	
  posi(ve	
  
•  Specificity	
  
–  Percent	
  of	
  without	
  disease	
  who	
  test	
  nega(ve	
  
•  Posi(ve	
  Predic(ve	
  Value	
  
–  Prevalence*Sensi(vity/(Prevalence*Sensi(vity+(1-­‐Prevalence)*(1-­‐Specificity))	
  
•  Nega(ve	
  Predic(ve	
  Value	
  
–  (1-­‐	
  Prevalence)*Specificity/((1-­‐	
  Prevalence)*Specificity+Prevalence*(1-­‐Sensi(vity)	
  
•  Odds	
  Ra(o	
  
–  Odds/Odds	
  
–  Odds=p/(1-­‐p)	
  
•  ROC	
  Curve	
  
–  True	
  Posi(ve	
  Frac(on	
  versus	
  False	
  Posi(ve	
  
Disease Present Disease Absent
Positive Test A B A+B
Negative Test C D C+D
A+C B+D
Sensitivity A/A+C
Specificity D/B+D
©	
  2013	
  Winton	
  Gibbons	
   14	
  
Reading	
  List	
  
•  Believability	
  of	
  rela(ve	
  risks	
  and	
  odds	
  ra(os	
  in	
  abstracts:	
  cross	
  sec(onal	
  study.	
  
–  BMJ,	
  Jul	
  2006;	
  333:	
  231	
  -­‐	
  234	
  
•  Evidence	
  of	
  bias	
  and	
  varia(on	
  in	
  diagnos(c	
  accuracy	
  studies	
  
–  Can.	
  Med.	
  Assoc.	
  J.,	
  Feb	
  2006;	
  174:	
  469	
  -­‐	
  476.	
  
•  Tips	
  for	
  learners	
  of	
  evidence-­‐based	
  medicine:	
  5.	
  The	
  effect	
  of	
  spectrum	
  of	
  disease	
  on	
  the	
  performance	
  of	
  diagnos(c	
  tests	
  
–  Can.	
  Med.	
  Assoc.	
  J.,	
  Aug	
  2005;	
  173:	
  385	
  -­‐	
  390	
  
•  Predic(on	
  of	
  cancer	
  outcome	
  with	
  microarrays:	
  a	
  mul(ple	
  random	
  valida(on	
  strategy.	
  
–  Lancet.	
  2005;365:488-­‐92.	
  
•  Can	
  Genentech	
  Double	
  Its	
  NHL	
  Franchise?	
  Focus	
  on	
  Fc	
  Receptors	
  
–  William	
  Blair	
  &	
  Company	
  Research	
  Note.	
  December	
  2,	
  2004	
  
•  Limita(ons	
  of	
  the	
  Odds	
  Ra(o	
  in	
  Gauging	
  the	
  Performance	
  of	
  a	
  Diagnos(c,	
  Prognos(c,	
  or	
  Screening	
  Marker	
  
–  Am.	
  J.	
  Epidemiol.,	
  May	
  2004;	
  159:	
  882	
  -­‐	
  890.	
  
•  When	
  can	
  a	
  risk	
  factor	
  be	
  used	
  as	
  a	
  worthwhile	
  screening	
  test?	
  
–  BMJ,	
  Dec	
  1999;	
  319:	
  1562.	
  
•  Drug	
  Metabolism	
  and	
  Variability	
  among	
  Pa(ents	
  in	
  Drug	
  Response	
  
–  N.	
  Engl.	
  J.	
  Med.,	
  May	
  2005;	
  352:	
  2211	
  -­‐	
  2221.	
  
•  Codeine	
  Intoxica(on	
  Associated	
  with	
  Ultrarapid	
  CYP2D6	
  Metabolism	
  
–  N.	
  Engl.	
  J.	
  Med.,	
  Dec	
  2004;	
  351:	
  2827	
  -­‐	
  2831.	
  
•  Developmental	
  Pharmacology	
  —	
  Drug	
  Disposi(on,	
  Ac(on,	
  and	
  Therapy	
  in	
  Infants	
  and	
  Children	
  
–  N.	
  Engl.	
  J.	
  Med.,	
  Sep	
  2003;	
  349:	
  1157	
  -­‐	
  1167.	
  
©	
  2013	
  Winton	
  Gibbons	
   15	
  
One	
  Week’s	
  Worth	
  of	
  Gene(c	
  
Biomarker	
  Discovery	
  
•  “Gene(c	
  fingerprints	
  iden(fy	
  brain	
  tumors'	
  origins”	
  (Feb	
  1)	
  	
  
•  “Mayo	
  Clinic	
  Research	
  Shows	
  35	
  Percent	
  Of	
  49	
  Young	
  People	
  Who	
  Died	
  Suddenly	
  And	
  Inexplicably	
  Had	
  
Gene(c	
  Heart	
  Defects”	
  (Jan	
  31)	
  
•  “UCLA	
  Researchers	
  Discover	
  Genes	
  Linked	
  To	
  Lymphoma,	
  Opening	
  Way	
  For	
  New	
  Targeted	
  Drugs”	
  (Jan	
  31)	
  
•  “Study	
  finds	
  genes	
  that	
  predict	
  transplant	
  rejec(on”	
  (Jan	
  30)	
  	
  
•  “A	
  Form	
  Of	
  The	
  Alcohol	
  Dehydrogenase	
  Gene	
  May	
  Protect	
  Afro-­‐Trinidadians	
  From	
  Developing	
  
Alcoholism”	
  (Jan	
  30)	
  
•  “Autoimmune	
  Disease	
  Breakthrough	
  Gained	
  By	
  Iden(fica(on	
  Of	
  30	
  Errant	
  Genes”	
  (Jan	
  29)	
  	
  
•  “Gene	
  'could	
  predict	
  ADHD	
  drug	
  reac(on'”	
  (Jan	
  29)	
  	
  
•  “50%	
  of	
  Americans	
  have	
  gene	
  that	
  affects	
  how	
  body	
  burns	
  sugar”	
  (Jan	
  28)	
  
•  “Scien(sts	
  link	
  paternal	
  gene,	
  au(sm”	
  (Jan	
  26)	
  	
  
•  “Gene(c	
  Risk	
  Factor	
  For	
  Parkinson's	
  Found”	
  (Jan	
  25)	
  
•  “Calculated	
  Risk:	
  Scien(sts	
  Discover	
  Gene(c	
  Risk	
  Factor	
  For	
  Smoking-­‐linked	
  Head	
  And	
  Neck	
  Cancer”	
  (Jan	
  
25)	
  
Source: National Office of Public Health Genomics (NOPHG)
©	
  2013	
  Winton	
  Gibbons	
   16	
  
Senator	
  Barack	
  Obama	
  Introduces	
  the	
  Genomics	
  and	
  Personalized	
  
Medicine	
  Act	
  
	
  
The	
  Personalized	
  Medicine	
  Coali(on	
  welcomes	
  the	
  introduc(on	
  of	
  
S.3822,	
  the	
  Genomics	
  and	
  Personalized	
  Medicine	
  Act,	
  and	
  looks	
  
forward	
  to	
  working	
  with	
  Senator	
  Barack	
  Obama,	
  the	
  bill's	
  author,	
  
and	
  his	
  colleagues	
  in	
  Congress,	
  to	
  hasten	
  the	
  introduc(on	
  of	
  
personalized	
  medicine.	
  The	
  legisla(on,	
  among	
  other	
  things,	
  aims	
  to	
  
improve	
  the	
  coordina(on	
  of	
  public	
  and	
  private	
  efforts	
  to	
  facilitate	
  
the	
  development	
  of	
  safer	
  and	
  more	
  effec(ve	
  drugs,	
  create	
  a	
  
biobanking	
  ini(a(ve,	
  expand	
  the	
  genomics	
  workforce,	
  and	
  improve	
  
the	
  quality	
  of	
  clinical	
  gene(c	
  tes(ng.	
  
©	
  2013	
  Winton	
  Gibbons	
   17	
  
The	
  Genomics	
  and	
  Personalized	
  
Medicine	
  Act	
  of	
  2006	
  	
  
•  Sponsoring	
  Research.	
  	
  The	
  bill	
  sets	
  aside	
  $150	
  million	
  to	
  sponsor	
  research	
  on	
  genomics.	
  	
  It	
  enables	
  
a	
  na(onal	
  biobanking	
  ini(a(ve	
  and	
  sets	
  up	
  a	
  system	
  to	
  pool	
  and	
  synthesize	
  genomic	
  data	
  from	
  
local	
  sources.	
  This	
  act	
  establishes	
  an	
  interagency	
  task	
  force	
  to	
  accelerate	
  the	
  transla(on	
  of	
  
research	
  into	
  medical	
  prac(ce.	
  	
  Finally,	
  the	
  legisla(on	
  invests	
  in	
  the	
  next	
  genera(on	
  genomics	
  
workforce	
  by	
  encouraging	
  the	
  recruitment	
  and	
  reten(on	
  of	
  genomic	
  professionals,	
  and	
  promotes	
  
the	
  integra(on	
  of	
  genomics	
  across	
  all	
  clinical	
  and	
  public	
  health	
  disciplines.	
  
•  Encouraging	
  InnovaAon.	
  	
  The	
  legisla(on	
  provides	
  a	
  100	
  percent	
  tax	
  credit	
  for	
  the	
  development	
  of	
  
companion	
  diagnos(c	
  tests	
  that	
  can	
  improve	
  the	
  effec(veness	
  or	
  safety	
  of	
  certain	
  drugs.	
  	
  	
  In	
  
addi(on,	
  the	
  Na(onal	
  Academies	
  will	
  conduct	
  a	
  study	
  to	
  determine	
  what	
  addi(onal	
  incen(ves	
  are	
  
needed,	
  and	
  how	
  they	
  should	
  be	
  structured.	
  
•  Modernizing	
  the	
  FDA	
  and	
  CMS.	
  	
  The	
  bill	
  requires	
  that	
  FDA	
  and	
  CMS	
  study	
  and	
  update	
  regulatory	
  
processes	
  to	
  assure	
  the	
  quality	
  of	
  genomic	
  tests	
  through	
  improved	
  oversight	
  and	
  regula(on.	
  
•  ProtecAng	
  Consumers.	
  	
  The	
  legisla(on	
  protects	
  consumers	
  by	
  reaffirming	
  Congress	
  commitment	
  to	
  
stopping	
  gene(c	
  discrimina(on	
  and	
  protec(ng	
  gene(c	
  privacy.	
  In	
  addi(on,	
  direct-­‐to-­‐consumer	
  
marke(ng	
  of	
  gene(c	
  tests	
  would	
  receive	
  greater	
  scru(ny	
  and	
  regula(on.	
  	
  
©	
  2013	
  Winton	
  Gibbons	
   18	
  
Cytochrome	
  p450	
  Enzymes	
  
•  The	
  superfamily	
  has	
  undergone	
  divergent	
  evolu(on,	
  and	
  
the	
  ancestral	
  gene	
  is	
  likely	
  2	
  to	
  3	
  1/2	
  billion	
  years	
  old.	
  
•  The	
  recent	
  'burst'	
  in	
  new	
  P450	
  genes,	
  par(cularly	
  in	
  the	
  II	
  
family	
  during	
  the	
  past	
  800	
  million	
  years,	
  appears	
  to	
  be	
  the	
  
result	
  of	
  'animal-­‐plant	
  warfare'.	
  
•  Due	
  to	
  the	
  presence	
  or	
  absence	
  of	
  a	
  par(cular	
  P450	
  gene	
  in	
  
one	
  species	
  but	
  not	
  the	
  other,	
  it	
  may	
  not	
  be	
  correct	
  to	
  
extrapolate	
  toxicity	
  or	
  cancer	
  data	
  from	
  rodent	
  to	
  human.	
  
•  Increases	
  in	
  the	
  P450	
  gene	
  product	
  (enzyme	
  induc(on)	
  
almost	
  always	
  reflect	
  an	
  elevated	
  rate	
  in	
  gene	
  
transcrip(on,	
  although	
  there	
  are	
  several	
  excep(ons.	
  
©	
  2013	
  Winton	
  Gibbons	
   19	
  
Posted	
  on:	
  Monday,	
  22	
  January	
  2007,	
  21:00	
  CST	
  
GENETIC	
  MEDICINE	
  ;	
  Some	
  Heart	
  PaAents	
  Get	
  DNA	
  Tests	
  to	
  Determine	
  Correct	
  Drug	
  Dose	
  
	
  
By	
  Linda	
  A.	
  Johnson	
  
	
  
Personalized	
  medicine,	
  the	
  tailored	
  treatments	
  that	
  a	
  few	
  pa(ents	
  now	
  get	
  based	
  on	
  their	
  own	
  
DNA,	
  is	
  finally	
  headed	
  for	
  the	
  masses:	
  the	
  many	
  heart	
  pa(ents	
  at	
  risk	
  of	
  deadly	
  blood	
  clots.	
  
	
  
At	
  least	
  2	
  million	
  Americans	
  with	
  an	
  abnormal,	
  clot-­‐triggering	
  heart	
  rhythm	
  take	
  the	
  pill	
  warfarin,	
  
also	
  sold	
  as	
  Coumadin.	
  
	
  
Gewng	
  too	
  liele	
  can	
  lead	
  to	
  a	
  stroke,	
  and	
  too	
  much	
  can	
  cause	
  life-­‐threatening	
  bleeding.	
  To	
  find	
  
the	
  right	
  dose	
  for	
  each	
  pa(ent,	
  doctors	
  use	
  trial	
  and	
  error	
  -­‐-­‐	
  and	
  the	
  errors	
  lead	
  to	
  tens	
  of	
  
thousands	
  of	
  hospitaliza(ons	
  and	
  deaths	
  every	
  year.	
  
	
  
Star(ng	
  this	
  month,	
  about	
  1,000	
  pa(ents	
  who	
  have	
  a	
  condi(on	
  known	
  as	
  atrial	
  fibrilla(on	
  will	
  
take	
  part	
  in	
  a	
  project	
  that	
  will	
  match	
  their	
  Coumadin	
  dose	
  to	
  their	
  specific	
  gene(c	
  needs.	
  
	
  
This	
  gene(c	
  fingerprin(ng	
  should	
  single	
  out	
  the	
  many	
  people	
  whose	
  bodies	
  break	
  down	
  warfarin	
  
faster	
  or	
  slower	
  than	
  normal,	
  and	
  their	
  doctors	
  can	
  immediately	
  adjust	
  their	
  dosage	
  to	
  prevent	
  
dangerous	
  complica8ons.	
  
	
  
"Twenty	
  percent	
  to	
  30	
  percent	
  of	
  people	
  are	
  either	
  very	
  fast	
  or	
  very	
  slow"	
  to	
  metabolize	
  many	
  
drugs	
  but	
  don't	
  know	
  it,	
  said	
  Dr.	
  Robert	
  Epstein,	
  chief	
  medical	
  officer	
  at	
  prescrip(on	
  benefit	
  
manager	
  Medco	
  Health	
  Solu(ons	
  of	
  Franklin	
  Lakes,	
  N.J.,	
  which	
  is	
  collabora(ng	
  in	
  the	
  effort	
  with	
  
the	
  Mayo	
  Clinic,	
  based	
  in	
  Rochester,	
  Minn.	
  
©	
  2013	
  Winton	
  Gibbons	
   20	
  
Effect	
  of	
  CYP450	
  Muta(ons	
  
•  Rapid	
  metabolizers	
  
–  Carry	
  mul(ple	
  copies	
  (3-­‐13)	
  of	
  
func(onal	
  alleles	
  and	
  produce	
  excess	
  
enzyma(c	
  ac(vity	
  
•  Normal	
  metabolizers	
  
–  Possess	
  normal	
  func(onal	
  alleles	
  
•  Intermediate	
  metabolizers	
  
–  Possess	
  one	
  reduced	
  ac(vity	
  allele	
  or	
  
one	
  null	
  allele	
  
•  Poor	
  metabolizers	
  
–  Carry	
  two	
  mutant	
  alleles	
  which	
  result	
  
in	
  complete	
  loss	
  of	
  enzyme	
  ac(vity	
  
•  2D6	
  gene	
  duplica(ons	
  
–  Ethiopians	
  16.0%	
  
–  Saudi	
  Arabians	
  10.4%	
  
–  Spaniards	
  10%	
  
–  Italians	
  8.3%	
  
–  Zimbabweans	
  2%	
  
–  Germans	
  1.8%	
  
–  Chinese	
  1.3%	
  
•  2D6	
  Intermediate	
  and	
  poor	
  metabolizers	
  
–  Caucasians	
  7-­‐8%	
  
–  Japanese	
  ~1%	
  
–  Chinese	
  ~1%	
  
–  African	
  Americans~6%	
  
Source:	
  Roche	
  ©	
  2013	
  Winton	
  Gibbons	
   21	
  
CYP450	
  Substrates	
  (drugs)	
  
1A2 2B6 2C8 2C19 2C9
amitriptyline bupropion paclitaxel Proton Pump Inhibitors: NSAIDs:
caffeine cyclophosphamide torsemide lansoprazole diclofenac
clomipramine efavirenz amodiaquine omeprazole ibuprofen
clozapine ifosfamide cerivastatin pantoprazole lornoxicam
cyclobenzaprine methadone repaglinide rabeprazole meloxicam
estradiol E-3810 S-naproxen=>Nor
fluvoxamine piroxicam
haloperidol Anti-epileptics: diazepam=>Nor suprofen
imipramine N-DeMe phenytoin(O)
mexilletine S-mephenytoin Oral Hypoglycemic Agents:
naproxen phenobarbitone tolbutamide
olanzapine glipizide
ondansetron amitriptyline
phenacetin=> carisoprodol Angiotensin II Blockers:
acetaminophen=>NAPQI citalopram losartan
propranolol clomipramine irbesartan
riluzole cyclophosphamide
ropivacaine hexobarbital Sulfonylureas:
tacrine imipramine N-DeME glyburide/
theophylline indomethacin glibenclamide
tizanidine R-mephobarbital glipizide
verapamil moclobemide glimepiride
(R)warfarin nelfinavir tolbutamide
zileuton nilutamide
zolmitriptan primidone amitriptyline
progesterone celecoxib
proguanil fluoxetine
propranolol fluvastatin glyburide
teniposide nateglinide
R-warfarin=>8-OH phenytoin=>4-OH
rosiglitazone
tamoxifen
torsemide
S-warfarin
Source:	
  CYTOCHROME	
  P450	
  DRUG-­‐INTERACTION	
  TABLE-­‐-­‐Last	
  Updated:	
  Tue	
  Oct	
  17	
  2006-­‐-­‐Indiana University
Department of Medicine, Division of Clinical Pharmacology
©	
  2013	
  Winton	
  Gibbons	
   22	
  
CYP450	
  Substrates	
  (drugs)-­‐-­‐con(nued	
  2E1
Beta Blockers: alprenolol Anesthetics: Macrolide antibiotics: Steroid 6beta-OH:
carvedilol amphetamine enflurane clarithromycin estradiol
S-metoprolol aripiprazole halothane erythromycin (not 3A5) hydrocortisone
propafenone atomoxetine isoflurane NOT azithromycin progesterone
timolol bufuralol methoxyflurane telithromycin testosterone
chlorpheniramine sevoflurane
Antidepressants: chlorpromazine Anti-arrhythmics: alfentanyl
amitriptyline codeine (=>O-desMe) acetaminophen quinidine=>3-OH (not 3A5) aprepitant
clomipramine debrisoquine =>NAPQI aripiprazole
desipramine dexfenfluramine aniline Benzodiazepines: buspirone
imipramine dextromethorphan benzene alprazolam cafergot
paroxetine duloxetine chlorzoxazone diazepam=>3OH caffeine=>TMU
encainide ethanol midazolam cilostazol
Antipsychotics: flecainide N,N-dimethyl formamide triazolam cocaine
haloperidol fluoxetine theophylline codeine- N-demethylation
perphenazine fluvoxamine =>8-OH Immune Modulators: dapsone
risperidone=>9OH lidocaine cyclosporine dexamethasone
thioridazine metoclopramide tacrolimus (FK506) dextromethorphan
zuclopenthixol methoxyamphetamine docetaxel
mexilletine HIV Antivirals: domperidone
minaprine indinavir eplerenone
nebivolol nelfinavir fentanyl
nortriptyline ritonavir finasteride
ondansetron saquinavir gleevec
oxycodone haloperidol
perhexiline Prokinetic: irinotecan
phenacetin cisapride LAAM
phenformin lidocaine
promethazine Antihistamines: methadone
propranolol astemizole nateglinide
sparteine chlorpheniramine odanestron
tamoxifen terfenidine pimozide
tramadol propranolol
venlafaxine Calcium Channel Blockers: quetiapine
amlodipine quinine
diltiazem risperidone
felodipine NOT rosuvastatin
lercanidipine salmeterol
nifedipine sildenafil
nisoldipine sirolimus
nitrendipine tamoxifen
verapamil taxol
terfenadine
HMG CoA Reductase Inhibitors: trazodone
atorvastatin vincristine
cerivastatin zaleplon
lovastatin ziprasidone
NOT pravastatin zolpidem
simvastatin
2D6 3A4,5,7
Source:	
  CYTOCHROME	
  P450	
  DRUG-­‐INTERACTION	
  TABLE-­‐-­‐Last	
  Updated:	
  Tue	
  
Oct	
  17	
  2006-­‐-­‐Indiana University Department of Medicine,
Division of Clinical Pharmacology
©	
  2013	
  Winton	
  Gibbons	
   23	
  
CYP450	
  Inhibitors	
  
Source:	
  CYTOCHROME	
  P450	
  DRUG-­‐INTERACTION	
  TABLE-­‐-­‐Last	
  
Updated:	
  Tue	
  Oct	
  17	
  2006-­‐-­‐Indiana University
Department of Medicine, Division of Clinical
Pharmacology
1A2 2C19 2C9 2D6 3A4,5,7
amiodarone chloramphenicol amiodarone amiodarone HIV Antivirals:
cimetidine cimetidine fenofibrate bupropion delaviridine
ciprofloxacin felbamate fluconazole celecoxib indinavir
fluoroquinolones fluoxetine fluvastatin chlorpheniramine nelfinavir
fluvoxamine fluvoxamine fluvoxamine chlorpheniramine ritonavir
furafylline indomethacin isoniazid chlorpromazine
interferon ketoconazole lovastatin cimetidine amiodarone
methoxsalen lansoprazole phenylbutazone citalopram aprepitant
mibefradil modafinil omeprazole probenicid clemastine NOT azithromycin
oxcarbazepine sertraline clomipramine chloramphenicol
2B6 probenicid sulfamethoxazole cocaine cimetidine
thiotepa ticlopidine sulfaphenazole diphenhydramine clarithromycin
ticlopidine topiramate teniposide doxepin diethyl- dithiocarbamate
voriconazole doxorubicin diltiazem
2C8 2E1 zafirlukast duloxetine erythromycin
trimethoprim diethyl- dithiocarbamate escitalopram fluoxetine fluconazole
quercetin disulfiram halofantrine fluvoxamine
glitazones histamine H1 receptor antagonists gestodene
gemfibrozil hydroxyzine grapefruit juice
montelukast levomepromazine imatinib
trimethoprim methadone itraconazole
metoclopramide ketoconazole
mibefradil mifepristone
midodrine nefazodone
moclobemide norfloxacin
paroxetine norfluoxetine
perphenazine mibefradil
quinidine star fruit
ranitidine verapamil
red-haloperidol voriconazole
ritonavir
sertraline
terbinafine
ticlopidine
tripelennamine
©	
  2013	
  Winton	
  Gibbons	
   24	
  
CYP450	
  Inducers	
  
Source:	
  CYTOCHROME	
  P450	
  DRUG-­‐INTERACTION	
  TABLE-­‐-­‐Last	
  Updated:	
  Tue	
  Oct	
  17	
  2006-­‐-­‐Indiana University Department of Medicine, Division
of Clinical Pharmacology
1A2 2C19 3A4,5,7
broccoli carbamazepine HIV Antivirals:
brussel sprouts norethindrone efavirenz
char-grilled meat NOT pentobarbital nevirapine
insulin prednisone
methyl cholanthrene rifampin barbiturates
modafinil carbamazepine
nafcillin 2C9 efavirenz
beta- naphthoflavone rifampin glucocorticoids
omeprazole secobarbital modafinil
tobacco nevirapine
2D6 phenobarbital
2B6 dexamethasone phenytoin
phenobarbital rifampin rifampin
rifampin St. John's wort
2E1 troglitazone
2C8 ethanol oxcarbazepine
rifampin isoniazid pioglitazone
rifabutin
©	
  2013	
  Winton	
  Gibbons	
   25	
  
Personalized	
  Medicine-­‐Pros	
  and	
  Cons	
  
•  Desire	
  for	
  efficacy	
  
•  Desire	
  for	
  safety	
  
•  Because	
  we	
  can…	
  
•  Clinical	
  study	
  size	
  and	
  
cost	
  
–  Efficacy	
  
–  Safety	
  
•  COGS	
  
•  Marke(ng	
  expense	
  
•  Design	
  around	
  
–  Dosing	
  (case	
  studies)	
  
–  Ligand	
  binding	
  (case	
  study)	
  
–  Alterna(ve	
  target	
  or	
  MOA	
  
©	
  2013	
  Winton	
  Gibbons	
   26	
  
Future Rx Targets Not Likely; Orphan Drugs
Existing Rx Today
Practical with Proper
Data
Only Dosing
Modifications for
Metabolism
One-Size Rationalize Personalize
OneDrug AFew Drugs Many Drugs
Economic Pressure
Scientific Pressure
Outlook	
  for	
  Personalized	
  Medicine	
  
©	
  2013	
  Winton	
  Gibbons	
   27	
  
Cases	
  
•  Rituxan	
  and	
  NHL	
  
•  MRI	
  for	
  stroke	
  (Lancet	
  2007) 	
  
•  Gene	
  signature	
  for	
  breast	
  cancer	
  (NEJM	
  2007)	
  
©	
  2013	
  Winton	
  Gibbons	
   28	
  
Thoughts	
  on	
  the	
  Cases	
  
•  Read	
  the	
  literature	
  and	
  do	
  your	
  homework	
  
•  Design	
  around	
  personaliza(on	
  
–  Genitope	
  and	
  Favrille	
  s(ll	
  have	
  a	
  chance	
  
•  Understand	
  the	
  clinical	
  environment	
  
•  Odd	
  Ra(os	
  
•  Comparison	
  against	
  normals	
  versus	
  mimics	
  or	
  common	
  
differen(al	
  (all	
  comers)	
  
•  Over-­‐fiwng	
  
–  Degrees	
  of	
  freedom	
  
–  Algorithms	
  
–  Sta(s(cal	
  tests	
  
•  Valida(on,	
  valida(on,	
  valida(on	
  
©	
  2013	
  Winton	
  Gibbons	
   29	
  
Performance	
  of	
  Rituxan	
  Varies	
  by	
  Fc	
  
Polymorphism	
  
©	
  2013	
  Winton	
  Gibbons	
   30	
  
An(-­‐idiotype	
  Vaccines	
  S(ll	
  	
  Appear	
  to	
  
Perform	
  Best	
  	
  
©	
  2013	
  Winton	
  Gibbons	
   31	
  
High Heaven
Med
Orphan Drugs
Low Hell
Low Med High
(Number and Effect)
Power
of
Target
Degree of Polymorphism
Efficacy
Higher Throughput Screening Needed
Target	
  Selec(on	
  Strategy	
  
©	
  2013	
  Winton	
  Gibbons	
   32	
  
Almost	
  20%	
  of	
  ERs	
  May	
  Not	
  Have	
  Any	
  
Access	
  to	
  MRI	
  	
  
Source:	
  Biosite	
  Investor	
  R&D	
  Day	
  2006	
  
©	
  2013	
  Winton	
  Gibbons	
   33	
  
Available	
  MRIs	
  Take	
  Long	
  and	
  Are	
  Not	
  
Available	
  All	
  Shi`s	
  
Source:	
  Biosite	
  
Investor	
  R&D	
  Day	
  
2006	
  
©	
  2013	
  Winton	
  Gibbons	
   34	
  
Odds	
  Ra(os	
  Must	
  Be	
  Quite	
  High	
  to	
  Be	
  
Useful	
  
Limitations of the Odds Ratio in
Gauging the Performance of a
Diagnostic, Prognostic, or Screening
Marker. Am. J. Epidemiol., May
2004; 159: 882 - 890.	

©	
  2013	
  Winton	
  Gibbons	
   35	
  
Sources	
  of	
  Bias	
  in	
  
DiagnosAcs	
  
©	
  2013	
  Winton	
  Gibbons	
   36	
  
Evidence of bias and variation in diagnostic accuracy studies.	

Can. Med. Assoc. J., Feb 2006; 174: 469 - 476.
Q	
  &	
  A 	
  
•  LinkedIn	
  
– hep://www.linkedin.com/in/wintongibbons/	
  
•  Twieer	
  
– @wingibbons	
  
•  Blog	
  
– hep://www.wingibbons.wordpress.com	
  
	
  
©	
  2013	
  Winton	
  Gibbons	
   38	
  

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Diagnostics and personalized medicine

  • 1. Diagnos(cs  and  Personalized   Medicine   Dynamics  in  the  Biotechnology  and   Life  Science  Industry   Tuesday,  February  6,  2007  
  • 2. Objec(ves   •  Challenge  common  wisdom:  help  you  think   •  Prepare  you  for  pitches   •  Provide  basic  background   ©  2013  Winton  Gibbons   2  
  • 3. Topics  to  Cover   •  Overview  of  diagnos(c  market   •  Nomenclature   •  Marker  mining  and  valida(on   •  Personalized  medicine   •  Miscellaneous  and  Q  &  A   – Recent,  major  acquisi(ons   – Point-­‐of-­‐care   ©  2013  Winton  Gibbons   3  
  • 4. Overall  Market  Size  and  Structure   Source:  BBC,  Amersham  and  WG  analysis   In-vitro 81% In-vivo 19% 100%=$41.6  billion   ©  2013  Winton  Gibbons   4  
  • 5. IVD  Market  Size  and  Structure   $7,997 $6,582 $6,034 $1,861 $1,827 $1,740 $1,295 $1,217 $1,228 $4,088 Diabetes Infectious Disease Clinical Chemistry Hematology Immunology Endocrinology Coagulation Cancer Cardiac Other Source:  BBC  and  WG  analysis   ©  2013  Winton  Gibbons   5  
  • 6. IVD  Market  Size  and  Structure   Source:  BBC  and  WG  analysis   US 37% Europe 35% Japan 10% ROW 18% ©  2013  Winton  Gibbons   6  
  • 7. IVD  Market  Size  and  Structure   Source:  BBC  and  WG  analysis   Lab 75% PST 18% Ambulatory 7% ©  2013  Winton  Gibbons   7  
  • 8. Roche  Dominates  the  IVDs,  Especially   A`er  GE’s  Move   Roche 21% Abbott (pre GE) 12% J&J 10% Bayer (Siemens) 9% Beckman 7% Dade 6% Other 35% Source:  BBC  and  WG  analysis   ©  2013  Winton  Gibbons   8  
  • 9. Other  Thoughts  on  Industry  Structure   •  Top  4  Diagnos(cs  players  part  of  Larger  Medical  Product  Firm  (Roche,  GE,  J&J  and   Siemens)   –  Compe((ve  Informa(on  Spoey   •  Overlap  with  Life  Science  firms   –  Diagnos(cs  uses  much  of  the  same  technology  as  Life  Sciences,  so  a  number  of   companies  straddle  both  (Beckman,  BioRad,  Cepheid,  Celera  and  even  Roche).   –  However,  Diagnos(cs  is  different  due  to  regulatory,  medical  prac(ce,  reimbursement,   razor  /  razor  blade  and  larger,  diversified  players.   •  In-­‐vitro  Diagnos(cs  is  a  large  ($34  billion),  but  generally    grows  about  the  same   rate  as  nominal  GDP;  however,  there  are  a  few  fast-­‐growing  sub-­‐sectors  and  some   niche  opportuni(es   –  Molecular  diagnos(cs  (e.g.,  DNA)   –  Blood  Glucose   –  Novel  protein  markers  (e.g.,  BNP  and  others)   ©  2013  Winton  Gibbons   9  
  • 10. M.D.s Rx firms Device firms Dx Hospitals Pharmacies Distribution Stronger Poli(cal  Power  for  IVD  Firms  Typically   is  not  Strong   ©  2013  Winton  Gibbons   10  
  • 11. Dimension RxL Max Chemistry/Immunochemistry Analyzer GeneXpert Triage Diagnos(c  Instruments  Vary  in  Size   and  Complexity     ©  2013  Winton  Gibbons   11  
  • 12. Large  System  Purchases  Typically   Don’t  Depend  on  Single  Markers   • 5- to 6-year repurchase cycle • Labor savings (2/3 of cost) – Laboratory automation • 12- to 24-month selling cycle – Ease of use – Easy maintenance / reliability •Important analytes on the menu: Troponin I, HbA1c, BNP/NT-proBNP • Menu should cover 90%+ of volume high-sensitivity TSH and HCG Source: William Blair & Company, L.L.C. analysis Purchasing Behavior for Mainframe Immunodiagnostic Analyzers ©  2013  Winton  Gibbons   12  
  • 13. Some  Myths  in  Diagnos(cs   •  Best  test   –  Standardiza(on  /  installed  based—VHS  versus  Betamax  (e.g.,  Troponin  I  versus  T;  BNP  versus  NT-­‐proBNP?)   –  Plaoorm  migra(on  (NA  to  IA  to  CC)   –  Trial  and  error  (e.g.,  sta(ns)   •  POC   –  Cost  center  versus  total  cost   –  Lab  Director  power   –  MD  office   •  Work  flow   •  Profit  (Stark  II—July  26)   •  Pharmacogenomics   –  Metabolizing  enzymes  (CYP450s)   •  Yes   •  Drug-­‐drug  interac(ons   –  Individualized  medicine   •  Not  always   •  Except  certain  cancers  or  orphans   •  Drugs  to  target  big  markets,  just  using  new  biology   ©  2013  Winton  Gibbons   13  
  • 14. Nomenclature   •  Sensi(vity   –  Percent  with  disease  who  test  posi(ve   •  Specificity   –  Percent  of  without  disease  who  test  nega(ve   •  Posi(ve  Predic(ve  Value   –  Prevalence*Sensi(vity/(Prevalence*Sensi(vity+(1-­‐Prevalence)*(1-­‐Specificity))   •  Nega(ve  Predic(ve  Value   –  (1-­‐  Prevalence)*Specificity/((1-­‐  Prevalence)*Specificity+Prevalence*(1-­‐Sensi(vity)   •  Odds  Ra(o   –  Odds/Odds   –  Odds=p/(1-­‐p)   •  ROC  Curve   –  True  Posi(ve  Frac(on  versus  False  Posi(ve   Disease Present Disease Absent Positive Test A B A+B Negative Test C D C+D A+C B+D Sensitivity A/A+C Specificity D/B+D ©  2013  Winton  Gibbons   14  
  • 15. Reading  List   •  Believability  of  rela(ve  risks  and  odds  ra(os  in  abstracts:  cross  sec(onal  study.   –  BMJ,  Jul  2006;  333:  231  -­‐  234   •  Evidence  of  bias  and  varia(on  in  diagnos(c  accuracy  studies   –  Can.  Med.  Assoc.  J.,  Feb  2006;  174:  469  -­‐  476.   •  Tips  for  learners  of  evidence-­‐based  medicine:  5.  The  effect  of  spectrum  of  disease  on  the  performance  of  diagnos(c  tests   –  Can.  Med.  Assoc.  J.,  Aug  2005;  173:  385  -­‐  390   •  Predic(on  of  cancer  outcome  with  microarrays:  a  mul(ple  random  valida(on  strategy.   –  Lancet.  2005;365:488-­‐92.   •  Can  Genentech  Double  Its  NHL  Franchise?  Focus  on  Fc  Receptors   –  William  Blair  &  Company  Research  Note.  December  2,  2004   •  Limita(ons  of  the  Odds  Ra(o  in  Gauging  the  Performance  of  a  Diagnos(c,  Prognos(c,  or  Screening  Marker   –  Am.  J.  Epidemiol.,  May  2004;  159:  882  -­‐  890.   •  When  can  a  risk  factor  be  used  as  a  worthwhile  screening  test?   –  BMJ,  Dec  1999;  319:  1562.   •  Drug  Metabolism  and  Variability  among  Pa(ents  in  Drug  Response   –  N.  Engl.  J.  Med.,  May  2005;  352:  2211  -­‐  2221.   •  Codeine  Intoxica(on  Associated  with  Ultrarapid  CYP2D6  Metabolism   –  N.  Engl.  J.  Med.,  Dec  2004;  351:  2827  -­‐  2831.   •  Developmental  Pharmacology  —  Drug  Disposi(on,  Ac(on,  and  Therapy  in  Infants  and  Children   –  N.  Engl.  J.  Med.,  Sep  2003;  349:  1157  -­‐  1167.   ©  2013  Winton  Gibbons   15  
  • 16. One  Week’s  Worth  of  Gene(c   Biomarker  Discovery   •  “Gene(c  fingerprints  iden(fy  brain  tumors'  origins”  (Feb  1)     •  “Mayo  Clinic  Research  Shows  35  Percent  Of  49  Young  People  Who  Died  Suddenly  And  Inexplicably  Had   Gene(c  Heart  Defects”  (Jan  31)   •  “UCLA  Researchers  Discover  Genes  Linked  To  Lymphoma,  Opening  Way  For  New  Targeted  Drugs”  (Jan  31)   •  “Study  finds  genes  that  predict  transplant  rejec(on”  (Jan  30)     •  “A  Form  Of  The  Alcohol  Dehydrogenase  Gene  May  Protect  Afro-­‐Trinidadians  From  Developing   Alcoholism”  (Jan  30)   •  “Autoimmune  Disease  Breakthrough  Gained  By  Iden(fica(on  Of  30  Errant  Genes”  (Jan  29)     •  “Gene  'could  predict  ADHD  drug  reac(on'”  (Jan  29)     •  “50%  of  Americans  have  gene  that  affects  how  body  burns  sugar”  (Jan  28)   •  “Scien(sts  link  paternal  gene,  au(sm”  (Jan  26)     •  “Gene(c  Risk  Factor  For  Parkinson's  Found”  (Jan  25)   •  “Calculated  Risk:  Scien(sts  Discover  Gene(c  Risk  Factor  For  Smoking-­‐linked  Head  And  Neck  Cancer”  (Jan   25)   Source: National Office of Public Health Genomics (NOPHG) ©  2013  Winton  Gibbons   16  
  • 17. Senator  Barack  Obama  Introduces  the  Genomics  and  Personalized   Medicine  Act     The  Personalized  Medicine  Coali(on  welcomes  the  introduc(on  of   S.3822,  the  Genomics  and  Personalized  Medicine  Act,  and  looks   forward  to  working  with  Senator  Barack  Obama,  the  bill's  author,   and  his  colleagues  in  Congress,  to  hasten  the  introduc(on  of   personalized  medicine.  The  legisla(on,  among  other  things,  aims  to   improve  the  coordina(on  of  public  and  private  efforts  to  facilitate   the  development  of  safer  and  more  effec(ve  drugs,  create  a   biobanking  ini(a(ve,  expand  the  genomics  workforce,  and  improve   the  quality  of  clinical  gene(c  tes(ng.   ©  2013  Winton  Gibbons   17  
  • 18. The  Genomics  and  Personalized   Medicine  Act  of  2006     •  Sponsoring  Research.    The  bill  sets  aside  $150  million  to  sponsor  research  on  genomics.    It  enables   a  na(onal  biobanking  ini(a(ve  and  sets  up  a  system  to  pool  and  synthesize  genomic  data  from   local  sources.  This  act  establishes  an  interagency  task  force  to  accelerate  the  transla(on  of   research  into  medical  prac(ce.    Finally,  the  legisla(on  invests  in  the  next  genera(on  genomics   workforce  by  encouraging  the  recruitment  and  reten(on  of  genomic  professionals,  and  promotes   the  integra(on  of  genomics  across  all  clinical  and  public  health  disciplines.   •  Encouraging  InnovaAon.    The  legisla(on  provides  a  100  percent  tax  credit  for  the  development  of   companion  diagnos(c  tests  that  can  improve  the  effec(veness  or  safety  of  certain  drugs.      In   addi(on,  the  Na(onal  Academies  will  conduct  a  study  to  determine  what  addi(onal  incen(ves  are   needed,  and  how  they  should  be  structured.   •  Modernizing  the  FDA  and  CMS.    The  bill  requires  that  FDA  and  CMS  study  and  update  regulatory   processes  to  assure  the  quality  of  genomic  tests  through  improved  oversight  and  regula(on.   •  ProtecAng  Consumers.    The  legisla(on  protects  consumers  by  reaffirming  Congress  commitment  to   stopping  gene(c  discrimina(on  and  protec(ng  gene(c  privacy.  In  addi(on,  direct-­‐to-­‐consumer   marke(ng  of  gene(c  tests  would  receive  greater  scru(ny  and  regula(on.     ©  2013  Winton  Gibbons   18  
  • 19. Cytochrome  p450  Enzymes   •  The  superfamily  has  undergone  divergent  evolu(on,  and   the  ancestral  gene  is  likely  2  to  3  1/2  billion  years  old.   •  The  recent  'burst'  in  new  P450  genes,  par(cularly  in  the  II   family  during  the  past  800  million  years,  appears  to  be  the   result  of  'animal-­‐plant  warfare'.   •  Due  to  the  presence  or  absence  of  a  par(cular  P450  gene  in   one  species  but  not  the  other,  it  may  not  be  correct  to   extrapolate  toxicity  or  cancer  data  from  rodent  to  human.   •  Increases  in  the  P450  gene  product  (enzyme  induc(on)   almost  always  reflect  an  elevated  rate  in  gene   transcrip(on,  although  there  are  several  excep(ons.   ©  2013  Winton  Gibbons   19  
  • 20. Posted  on:  Monday,  22  January  2007,  21:00  CST   GENETIC  MEDICINE  ;  Some  Heart  PaAents  Get  DNA  Tests  to  Determine  Correct  Drug  Dose     By  Linda  A.  Johnson     Personalized  medicine,  the  tailored  treatments  that  a  few  pa(ents  now  get  based  on  their  own   DNA,  is  finally  headed  for  the  masses:  the  many  heart  pa(ents  at  risk  of  deadly  blood  clots.     At  least  2  million  Americans  with  an  abnormal,  clot-­‐triggering  heart  rhythm  take  the  pill  warfarin,   also  sold  as  Coumadin.     Gewng  too  liele  can  lead  to  a  stroke,  and  too  much  can  cause  life-­‐threatening  bleeding.  To  find   the  right  dose  for  each  pa(ent,  doctors  use  trial  and  error  -­‐-­‐  and  the  errors  lead  to  tens  of   thousands  of  hospitaliza(ons  and  deaths  every  year.     Star(ng  this  month,  about  1,000  pa(ents  who  have  a  condi(on  known  as  atrial  fibrilla(on  will   take  part  in  a  project  that  will  match  their  Coumadin  dose  to  their  specific  gene(c  needs.     This  gene(c  fingerprin(ng  should  single  out  the  many  people  whose  bodies  break  down  warfarin   faster  or  slower  than  normal,  and  their  doctors  can  immediately  adjust  their  dosage  to  prevent   dangerous  complica8ons.     "Twenty  percent  to  30  percent  of  people  are  either  very  fast  or  very  slow"  to  metabolize  many   drugs  but  don't  know  it,  said  Dr.  Robert  Epstein,  chief  medical  officer  at  prescrip(on  benefit   manager  Medco  Health  Solu(ons  of  Franklin  Lakes,  N.J.,  which  is  collabora(ng  in  the  effort  with   the  Mayo  Clinic,  based  in  Rochester,  Minn.   ©  2013  Winton  Gibbons   20  
  • 21. Effect  of  CYP450  Muta(ons   •  Rapid  metabolizers   –  Carry  mul(ple  copies  (3-­‐13)  of   func(onal  alleles  and  produce  excess   enzyma(c  ac(vity   •  Normal  metabolizers   –  Possess  normal  func(onal  alleles   •  Intermediate  metabolizers   –  Possess  one  reduced  ac(vity  allele  or   one  null  allele   •  Poor  metabolizers   –  Carry  two  mutant  alleles  which  result   in  complete  loss  of  enzyme  ac(vity   •  2D6  gene  duplica(ons   –  Ethiopians  16.0%   –  Saudi  Arabians  10.4%   –  Spaniards  10%   –  Italians  8.3%   –  Zimbabweans  2%   –  Germans  1.8%   –  Chinese  1.3%   •  2D6  Intermediate  and  poor  metabolizers   –  Caucasians  7-­‐8%   –  Japanese  ~1%   –  Chinese  ~1%   –  African  Americans~6%   Source:  Roche  ©  2013  Winton  Gibbons   21  
  • 22. CYP450  Substrates  (drugs)   1A2 2B6 2C8 2C19 2C9 amitriptyline bupropion paclitaxel Proton Pump Inhibitors: NSAIDs: caffeine cyclophosphamide torsemide lansoprazole diclofenac clomipramine efavirenz amodiaquine omeprazole ibuprofen clozapine ifosfamide cerivastatin pantoprazole lornoxicam cyclobenzaprine methadone repaglinide rabeprazole meloxicam estradiol E-3810 S-naproxen=>Nor fluvoxamine piroxicam haloperidol Anti-epileptics: diazepam=>Nor suprofen imipramine N-DeMe phenytoin(O) mexilletine S-mephenytoin Oral Hypoglycemic Agents: naproxen phenobarbitone tolbutamide olanzapine glipizide ondansetron amitriptyline phenacetin=> carisoprodol Angiotensin II Blockers: acetaminophen=>NAPQI citalopram losartan propranolol clomipramine irbesartan riluzole cyclophosphamide ropivacaine hexobarbital Sulfonylureas: tacrine imipramine N-DeME glyburide/ theophylline indomethacin glibenclamide tizanidine R-mephobarbital glipizide verapamil moclobemide glimepiride (R)warfarin nelfinavir tolbutamide zileuton nilutamide zolmitriptan primidone amitriptyline progesterone celecoxib proguanil fluoxetine propranolol fluvastatin glyburide teniposide nateglinide R-warfarin=>8-OH phenytoin=>4-OH rosiglitazone tamoxifen torsemide S-warfarin Source:  CYTOCHROME  P450  DRUG-­‐INTERACTION  TABLE-­‐-­‐Last  Updated:  Tue  Oct  17  2006-­‐-­‐Indiana University Department of Medicine, Division of Clinical Pharmacology ©  2013  Winton  Gibbons   22  
  • 23. CYP450  Substrates  (drugs)-­‐-­‐con(nued  2E1 Beta Blockers: alprenolol Anesthetics: Macrolide antibiotics: Steroid 6beta-OH: carvedilol amphetamine enflurane clarithromycin estradiol S-metoprolol aripiprazole halothane erythromycin (not 3A5) hydrocortisone propafenone atomoxetine isoflurane NOT azithromycin progesterone timolol bufuralol methoxyflurane telithromycin testosterone chlorpheniramine sevoflurane Antidepressants: chlorpromazine Anti-arrhythmics: alfentanyl amitriptyline codeine (=>O-desMe) acetaminophen quinidine=>3-OH (not 3A5) aprepitant clomipramine debrisoquine =>NAPQI aripiprazole desipramine dexfenfluramine aniline Benzodiazepines: buspirone imipramine dextromethorphan benzene alprazolam cafergot paroxetine duloxetine chlorzoxazone diazepam=>3OH caffeine=>TMU encainide ethanol midazolam cilostazol Antipsychotics: flecainide N,N-dimethyl formamide triazolam cocaine haloperidol fluoxetine theophylline codeine- N-demethylation perphenazine fluvoxamine =>8-OH Immune Modulators: dapsone risperidone=>9OH lidocaine cyclosporine dexamethasone thioridazine metoclopramide tacrolimus (FK506) dextromethorphan zuclopenthixol methoxyamphetamine docetaxel mexilletine HIV Antivirals: domperidone minaprine indinavir eplerenone nebivolol nelfinavir fentanyl nortriptyline ritonavir finasteride ondansetron saquinavir gleevec oxycodone haloperidol perhexiline Prokinetic: irinotecan phenacetin cisapride LAAM phenformin lidocaine promethazine Antihistamines: methadone propranolol astemizole nateglinide sparteine chlorpheniramine odanestron tamoxifen terfenidine pimozide tramadol propranolol venlafaxine Calcium Channel Blockers: quetiapine amlodipine quinine diltiazem risperidone felodipine NOT rosuvastatin lercanidipine salmeterol nifedipine sildenafil nisoldipine sirolimus nitrendipine tamoxifen verapamil taxol terfenadine HMG CoA Reductase Inhibitors: trazodone atorvastatin vincristine cerivastatin zaleplon lovastatin ziprasidone NOT pravastatin zolpidem simvastatin 2D6 3A4,5,7 Source:  CYTOCHROME  P450  DRUG-­‐INTERACTION  TABLE-­‐-­‐Last  Updated:  Tue   Oct  17  2006-­‐-­‐Indiana University Department of Medicine, Division of Clinical Pharmacology ©  2013  Winton  Gibbons   23  
  • 24. CYP450  Inhibitors   Source:  CYTOCHROME  P450  DRUG-­‐INTERACTION  TABLE-­‐-­‐Last   Updated:  Tue  Oct  17  2006-­‐-­‐Indiana University Department of Medicine, Division of Clinical Pharmacology 1A2 2C19 2C9 2D6 3A4,5,7 amiodarone chloramphenicol amiodarone amiodarone HIV Antivirals: cimetidine cimetidine fenofibrate bupropion delaviridine ciprofloxacin felbamate fluconazole celecoxib indinavir fluoroquinolones fluoxetine fluvastatin chlorpheniramine nelfinavir fluvoxamine fluvoxamine fluvoxamine chlorpheniramine ritonavir furafylline indomethacin isoniazid chlorpromazine interferon ketoconazole lovastatin cimetidine amiodarone methoxsalen lansoprazole phenylbutazone citalopram aprepitant mibefradil modafinil omeprazole probenicid clemastine NOT azithromycin oxcarbazepine sertraline clomipramine chloramphenicol 2B6 probenicid sulfamethoxazole cocaine cimetidine thiotepa ticlopidine sulfaphenazole diphenhydramine clarithromycin ticlopidine topiramate teniposide doxepin diethyl- dithiocarbamate voriconazole doxorubicin diltiazem 2C8 2E1 zafirlukast duloxetine erythromycin trimethoprim diethyl- dithiocarbamate escitalopram fluoxetine fluconazole quercetin disulfiram halofantrine fluvoxamine glitazones histamine H1 receptor antagonists gestodene gemfibrozil hydroxyzine grapefruit juice montelukast levomepromazine imatinib trimethoprim methadone itraconazole metoclopramide ketoconazole mibefradil mifepristone midodrine nefazodone moclobemide norfloxacin paroxetine norfluoxetine perphenazine mibefradil quinidine star fruit ranitidine verapamil red-haloperidol voriconazole ritonavir sertraline terbinafine ticlopidine tripelennamine ©  2013  Winton  Gibbons   24  
  • 25. CYP450  Inducers   Source:  CYTOCHROME  P450  DRUG-­‐INTERACTION  TABLE-­‐-­‐Last  Updated:  Tue  Oct  17  2006-­‐-­‐Indiana University Department of Medicine, Division of Clinical Pharmacology 1A2 2C19 3A4,5,7 broccoli carbamazepine HIV Antivirals: brussel sprouts norethindrone efavirenz char-grilled meat NOT pentobarbital nevirapine insulin prednisone methyl cholanthrene rifampin barbiturates modafinil carbamazepine nafcillin 2C9 efavirenz beta- naphthoflavone rifampin glucocorticoids omeprazole secobarbital modafinil tobacco nevirapine 2D6 phenobarbital 2B6 dexamethasone phenytoin phenobarbital rifampin rifampin rifampin St. John's wort 2E1 troglitazone 2C8 ethanol oxcarbazepine rifampin isoniazid pioglitazone rifabutin ©  2013  Winton  Gibbons   25  
  • 26. Personalized  Medicine-­‐Pros  and  Cons   •  Desire  for  efficacy   •  Desire  for  safety   •  Because  we  can…   •  Clinical  study  size  and   cost   –  Efficacy   –  Safety   •  COGS   •  Marke(ng  expense   •  Design  around   –  Dosing  (case  studies)   –  Ligand  binding  (case  study)   –  Alterna(ve  target  or  MOA   ©  2013  Winton  Gibbons   26  
  • 27. Future Rx Targets Not Likely; Orphan Drugs Existing Rx Today Practical with Proper Data Only Dosing Modifications for Metabolism One-Size Rationalize Personalize OneDrug AFew Drugs Many Drugs Economic Pressure Scientific Pressure Outlook  for  Personalized  Medicine   ©  2013  Winton  Gibbons   27  
  • 28. Cases   •  Rituxan  and  NHL   •  MRI  for  stroke  (Lancet  2007)   •  Gene  signature  for  breast  cancer  (NEJM  2007)   ©  2013  Winton  Gibbons   28  
  • 29. Thoughts  on  the  Cases   •  Read  the  literature  and  do  your  homework   •  Design  around  personaliza(on   –  Genitope  and  Favrille  s(ll  have  a  chance   •  Understand  the  clinical  environment   •  Odd  Ra(os   •  Comparison  against  normals  versus  mimics  or  common   differen(al  (all  comers)   •  Over-­‐fiwng   –  Degrees  of  freedom   –  Algorithms   –  Sta(s(cal  tests   •  Valida(on,  valida(on,  valida(on   ©  2013  Winton  Gibbons   29  
  • 30. Performance  of  Rituxan  Varies  by  Fc   Polymorphism   ©  2013  Winton  Gibbons   30  
  • 31. An(-­‐idiotype  Vaccines  S(ll    Appear  to   Perform  Best     ©  2013  Winton  Gibbons   31  
  • 32. High Heaven Med Orphan Drugs Low Hell Low Med High (Number and Effect) Power of Target Degree of Polymorphism Efficacy Higher Throughput Screening Needed Target  Selec(on  Strategy   ©  2013  Winton  Gibbons   32  
  • 33. Almost  20%  of  ERs  May  Not  Have  Any   Access  to  MRI     Source:  Biosite  Investor  R&D  Day  2006   ©  2013  Winton  Gibbons   33  
  • 34. Available  MRIs  Take  Long  and  Are  Not   Available  All  Shi`s   Source:  Biosite   Investor  R&D  Day   2006   ©  2013  Winton  Gibbons   34  
  • 35. Odds  Ra(os  Must  Be  Quite  High  to  Be   Useful   Limitations of the Odds Ratio in Gauging the Performance of a Diagnostic, Prognostic, or Screening Marker. Am. J. Epidemiol., May 2004; 159: 882 - 890. ©  2013  Winton  Gibbons   35  
  • 36. Sources  of  Bias  in   DiagnosAcs   ©  2013  Winton  Gibbons   36   Evidence of bias and variation in diagnostic accuracy studies. Can. Med. Assoc. J., Feb 2006; 174: 469 - 476.
  • 37. Q  &  A  
  • 38. •  LinkedIn   – hep://www.linkedin.com/in/wintongibbons/   •  Twieer   – @wingibbons   •  Blog   – hep://www.wingibbons.wordpress.com     ©  2013  Winton  Gibbons   38