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Agriculture Meets Informatics
What is the role of informatics to address the global agricultural
challenges of the 21st Century?
Bronwyn Harch
28 May 2014
Symposium Objectives
1. bring together science leaders in agriculture and
computational informatics to discuss experiences,
challenges, and future opportunities for cross-
disciplinary research
– forecasting and systems modelling, precision agriculture,
science into society, impact assessment
– space-time modelling, data assimilation and visualisation,
elicitation, network analysis, risk and uncertainty
2. provide opportunities for early career researchers so
new opportunities in agri-informatics become an
integral part of CSIRO’s capability
Agriculture Meets Informatics | Bronwyn Harch2 |
Symposium Outcomes
Key discussions & outcomes will be used fo :
• a synthesis report to the Office of the Chief
Executive
• research and impact planning for the
•Agricultural Productivity Flagship
•Digital Productivity and Services Flagship
Agriculture Meets Informatics | Bronwyn Harch3 |
Early Career Researchers
Agriculture Meets Informatics | Bronwyn Harch4 |
David Drew Research Scientist CES
Skye Gabb PhD Student CES
Nellie Hegarty Honours Student CAFHS
Criag Lobsey Postdoctoral Research Fellow CLW
Di Mayberry Research Scientist CES
Henrike Mielenz Postdoctoral Research Fellow CES
Dan Pagendam Research Scientist CCI
Hafiz Suleria Postdoctoral Research Fellow CAFHS
Anton Wasson Postdoctoral Research Fellow CPI
Alex Whan Postdoctoral Research Fellow CPI
Bangyou Zheng Postdoctoral Research Fellow CPI
Challenges for developed
economies like Australia …
Addressing productivity: A national challenge
Productivity
Imperative
Digital
Economy
Services
Focus
A national challenge Potential for greatest impact Information drives development
Focus upon the services
sector, which represents 81%
of Australia’s economy
Access to improved information
and communications will drive
productivity improvements in
the services sector
Productivity has declined
over the past decade to the
point where Australia is
significantly behind other
OECD countries and the
United States.
Competitive, Value Added Products & Services to
the Global Market
Ability to foster collaboration & connection for
addressing significant global challenges – risk
informed & managing uncertainty
Challenges for Australian
Agriculture …
Emerging Science Priorities Capability Workshops
10 |
Functional Genomics
& Epigenomics
Germplasm
Enhancement &
Breeding
Metabolic
Engineering
Integrated
Management Systems
Plant/Animal–Biotic
Interactions
Biodiversity and
Conservation
BIG DATA
• Phenomics
• G2P - [Multi-scale Gene to
Phenotype Strategies]
• Genomic selection
• Hologenome
• Info-Stewardship
• Deep imaging
MODELLING
• Metabolic
• Breeding systems
• Complex Bio/Eco-systems
Emerging Science
Breeding
• World leading genetic
improvement in key
commodities - e.g. wheat,
cotton, beef, …
• New Industries based on
novel plant/animal functions
Sustainability
• Optimised farming systems
integrating economics,
management and genetics
• Science-led management
of natural landscapes and
biota
Global Impact Technologies
• Food security/bioeconomy
game changing technologies
Outcomes
Current Capability
CSIRO PLANT INDUSTRY and CSIRO COMPUTATIONAL INFORMATICS
Sequenced
Genotypes
Phenomic Trait
Assessments
Rhizosphere,
Soil, Gut
Metagenomes
Next Generation
Breeding Systems
Next Generation
Farming Systems
Information and Decision
Making Value Chain
Environmental
Sensing
Future Agri-Production Needs
Next Generation Agriculture
Modelling
CSIRO PLANT INDUSTRY and CSIRO COMPUTATIONAL INFORMATICS
The research challenge?
Transformation of information &
decision making workflows
Transformation of information & decision making
workflows
Inputs
Magic
Happens Outputs
Designing for Data
Generation & Capture
Data Generation,
Communications
& Capture
Integration of
Data & Modelling
Implementation
Monitoring & evaluation
Storage, Discovery,
Communications, Access
Decision Making
Under Uncertainty
Gaining Insights & Understanding
Information &
Decision Making
Value Chain
Manufacturing
& Productivity
Energy &
Mining
Environment
Ag,
Food &
Health
* Capability
* Infrastructure
* Networks
Information & Decision Making Value Chain
Data is everywhere
Services EcoSystem
Sharing, Interoperability & Repurposing
Resources / Simulation / Modelling / Computational Services
Data Fusion / Alerting / Configuration / Querying / Composition
River Flow Climate Simulation
Rainfall
Historical Data
Electricity Recreational Urban Irrigation Weather
Communications Network
Communications Network
Aquaculture Bushfires
Demographics
Trading
Wind
Computational Informatics
Problems aren’t solved by just having a single analyst
working on a single computer any more.
Big Data
 Design
 Transmission
 Analytics
 Visualisation
 Experience
Volume
…
Velocity
Variety
Veracity
Volatility
Validity
CSIRO COMPUTATIONAL INFORMATICS
Cloud
Everything converges on Analytics in the Digital Economy
Digital
Information
New Business Models
New Products & Services
CSIRO DIGITAL PRODUCTIVITY FLAGSHIP
Sequenced
Genotypes
Phenomic Trait
Assessments
Rhizosphere,
Soil, Gut
Metagenomes
Next Generation
Breeding Systems
Next Generation
Farming Systems
Information and Decision
Making Value Chain
Environmental
Sensing
Future Agri-Production Needs
Next Generation Agriculture
Modelling
Thankyou

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Agriculture meets informatics

  • 1. Agriculture Meets Informatics What is the role of informatics to address the global agricultural challenges of the 21st Century? Bronwyn Harch 28 May 2014
  • 2. Symposium Objectives 1. bring together science leaders in agriculture and computational informatics to discuss experiences, challenges, and future opportunities for cross- disciplinary research – forecasting and systems modelling, precision agriculture, science into society, impact assessment – space-time modelling, data assimilation and visualisation, elicitation, network analysis, risk and uncertainty 2. provide opportunities for early career researchers so new opportunities in agri-informatics become an integral part of CSIRO’s capability Agriculture Meets Informatics | Bronwyn Harch2 |
  • 3. Symposium Outcomes Key discussions & outcomes will be used fo : • a synthesis report to the Office of the Chief Executive • research and impact planning for the •Agricultural Productivity Flagship •Digital Productivity and Services Flagship Agriculture Meets Informatics | Bronwyn Harch3 |
  • 4. Early Career Researchers Agriculture Meets Informatics | Bronwyn Harch4 | David Drew Research Scientist CES Skye Gabb PhD Student CES Nellie Hegarty Honours Student CAFHS Criag Lobsey Postdoctoral Research Fellow CLW Di Mayberry Research Scientist CES Henrike Mielenz Postdoctoral Research Fellow CES Dan Pagendam Research Scientist CCI Hafiz Suleria Postdoctoral Research Fellow CAFHS Anton Wasson Postdoctoral Research Fellow CPI Alex Whan Postdoctoral Research Fellow CPI Bangyou Zheng Postdoctoral Research Fellow CPI
  • 6. Addressing productivity: A national challenge Productivity Imperative Digital Economy Services Focus A national challenge Potential for greatest impact Information drives development Focus upon the services sector, which represents 81% of Australia’s economy Access to improved information and communications will drive productivity improvements in the services sector Productivity has declined over the past decade to the point where Australia is significantly behind other OECD countries and the United States.
  • 7. Competitive, Value Added Products & Services to the Global Market
  • 8. Ability to foster collaboration & connection for addressing significant global challenges – risk informed & managing uncertainty
  • 10. Emerging Science Priorities Capability Workshops 10 | Functional Genomics & Epigenomics Germplasm Enhancement & Breeding Metabolic Engineering Integrated Management Systems Plant/Animal–Biotic Interactions Biodiversity and Conservation BIG DATA • Phenomics • G2P - [Multi-scale Gene to Phenotype Strategies] • Genomic selection • Hologenome • Info-Stewardship • Deep imaging MODELLING • Metabolic • Breeding systems • Complex Bio/Eco-systems Emerging Science Breeding • World leading genetic improvement in key commodities - e.g. wheat, cotton, beef, … • New Industries based on novel plant/animal functions Sustainability • Optimised farming systems integrating economics, management and genetics • Science-led management of natural landscapes and biota Global Impact Technologies • Food security/bioeconomy game changing technologies Outcomes Current Capability CSIRO PLANT INDUSTRY and CSIRO COMPUTATIONAL INFORMATICS
  • 11. Sequenced Genotypes Phenomic Trait Assessments Rhizosphere, Soil, Gut Metagenomes Next Generation Breeding Systems Next Generation Farming Systems Information and Decision Making Value Chain Environmental Sensing Future Agri-Production Needs Next Generation Agriculture Modelling CSIRO PLANT INDUSTRY and CSIRO COMPUTATIONAL INFORMATICS
  • 12. The research challenge? Transformation of information & decision making workflows
  • 13. Transformation of information & decision making workflows Inputs Magic Happens Outputs
  • 14. Designing for Data Generation & Capture Data Generation, Communications & Capture Integration of Data & Modelling Implementation Monitoring & evaluation Storage, Discovery, Communications, Access Decision Making Under Uncertainty Gaining Insights & Understanding Information & Decision Making Value Chain
  • 15. Manufacturing & Productivity Energy & Mining Environment Ag, Food & Health * Capability * Infrastructure * Networks Information & Decision Making Value Chain
  • 16. Data is everywhere Services EcoSystem Sharing, Interoperability & Repurposing Resources / Simulation / Modelling / Computational Services Data Fusion / Alerting / Configuration / Querying / Composition River Flow Climate Simulation Rainfall Historical Data Electricity Recreational Urban Irrigation Weather Communications Network Communications Network Aquaculture Bushfires Demographics Trading Wind
  • 17. Computational Informatics Problems aren’t solved by just having a single analyst working on a single computer any more.
  • 18. Big Data  Design  Transmission  Analytics  Visualisation  Experience Volume … Velocity Variety Veracity Volatility Validity CSIRO COMPUTATIONAL INFORMATICS
  • 19. Cloud Everything converges on Analytics in the Digital Economy Digital Information New Business Models New Products & Services CSIRO DIGITAL PRODUCTIVITY FLAGSHIP
  • 20. Sequenced Genotypes Phenomic Trait Assessments Rhizosphere, Soil, Gut Metagenomes Next Generation Breeding Systems Next Generation Farming Systems Information and Decision Making Value Chain Environmental Sensing Future Agri-Production Needs Next Generation Agriculture Modelling