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Traditional statistical methods for evaluating prediction models are uninformative: towards a decision analytic approach ,[object Object],[object Object],[object Object]
The Kattan challenge A clinician comes to you  with two models (or tests) and wants to know which to use. What statistical method do you use to help answer the clinician?
Traditional biostatistical metrics   Sensitivity Specificity PPV NPV LR+ LR- AUC (Youden) Brier (mean squared error) % Free PSA < 20% 91% 40% 35% 92% 1.52 0.23 0.65 0.47 hK2 > 75 pg / ml 51% 78% 45% 82% 2.32 0.63 0.64 0.29
Which test is best? ,[object Object],[object Object]
Conclusion about traditional metrics ,[object Object],[object Object],How do we guide the clinician?
Prostate cancer High risk (10%) Low Risk (90%)
Prostate cancer Use of the model to determine treatment would avoid 47 unnecessary treatments at the expense of failing to treat 45 patients who do require treatment.
Discrimination ,[object Object],[object Object],[object Object]
Discrimination rules! ,[object Object],[object Object]
From the literature ,[object Object],[object Object]
Discrimination? So what? ,[object Object],[object Object],[object Object],[object Object]
Discrimination? So what? ,[object Object],[object Object],[object Object],[object Object]
Extremely bad models can have extremely good discrimination ,[object Object],[object Object],[object Object],[object Object]
Calibration ,[object Object],[object Object]
Calibration plot
Problem with calibration ,[object Object],[object Object],[object Object]
Incorporating clinical consequences ,[object Object],[object Object],[object Object],[object Object]
What is the “depends” parameter? ,[object Object],[object Object],[object Object],[object Object]
Intuitively ,[object Object],[object Object],[object Object]
Clinical net benefit ,[object Object]
Application to models with a continuous endpoint 1. Select a  p t   2. Positive test defined as   3. Calculate “Clinical Net Benefit” as:
Kallikrein panel: weight false positives by 20% ÷ (1 – 20%) Cancers found Unecessary Biopsies Net benefit Biopsy all men with elevated PSA   277 723 277 - 723 ÷ 4 96.25 Biopsy if  risk ≥ 20% on panel 211 276 211 - 276 ÷ 4 142
Net benefit has simple clinical interpretation ,[object Object],[object Object]
Net benefit has simple clinical interpretation ,[object Object],[object Object],[object Object],[object Object],[object Object]
Decision curve analysis 4. Vary  p t   over an appropriate range  Vickers & Elkin Med Decis Making 2006;26:565–574 1. Select a  p t   2. Positive test defined as   3. Calculate “Clinical Net Benefit” as:
Decision curve analysis
Gallina vs. Partin ,[object Object],[object Object],P=0.02
Decision curve analysis
 
 
Statistical analysis vs. decision analysis Traditional statistical analysis Traditional decision analysis Mathematics Simple Can be complex Additional data Not required Patient preferences, costs or effectiveness Endpoints Binary or  continuous Continuous endpoints problematic Assess clinical value? No Yes
Statistical analysis vs. decision analysis Traditional statistical analysis Traditional decision analysis Decision curve analysis Mathematics Simple Can be complex Simple Additional data Not required Patient preferences, costs or effectiveness Informal, general estimates Endpoints Binary or  continuous Continuous endpoints problematic Binary or continuous Assess clinical value? No Yes Yes
Decision curve analysis ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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NY Prostate Cancer Conference - A. Vickers - Session 1: Traditional statistical methods for evaluating prediction models are uninformative: towards a decision analytic approach

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  • 2. The Kattan challenge A clinician comes to you with two models (or tests) and wants to know which to use. What statistical method do you use to help answer the clinician?
  • 3. Traditional biostatistical metrics   Sensitivity Specificity PPV NPV LR+ LR- AUC (Youden) Brier (mean squared error) % Free PSA < 20% 91% 40% 35% 92% 1.52 0.23 0.65 0.47 hK2 > 75 pg / ml 51% 78% 45% 82% 2.32 0.63 0.64 0.29
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  • 6. Prostate cancer High risk (10%) Low Risk (90%)
  • 7. Prostate cancer Use of the model to determine treatment would avoid 47 unnecessary treatments at the expense of failing to treat 45 patients who do require treatment.
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  • 21. Application to models with a continuous endpoint 1. Select a p t 2. Positive test defined as 3. Calculate “Clinical Net Benefit” as:
  • 22. Kallikrein panel: weight false positives by 20% ÷ (1 – 20%) Cancers found Unecessary Biopsies Net benefit Biopsy all men with elevated PSA 277 723 277 - 723 ÷ 4 96.25 Biopsy if risk ≥ 20% on panel 211 276 211 - 276 ÷ 4 142
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  • 25. Decision curve analysis 4. Vary p t over an appropriate range Vickers & Elkin Med Decis Making 2006;26:565–574 1. Select a p t 2. Positive test defined as 3. Calculate “Clinical Net Benefit” as:
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  • 31. Statistical analysis vs. decision analysis Traditional statistical analysis Traditional decision analysis Mathematics Simple Can be complex Additional data Not required Patient preferences, costs or effectiveness Endpoints Binary or continuous Continuous endpoints problematic Assess clinical value? No Yes
  • 32. Statistical analysis vs. decision analysis Traditional statistical analysis Traditional decision analysis Decision curve analysis Mathematics Simple Can be complex Simple Additional data Not required Patient preferences, costs or effectiveness Informal, general estimates Endpoints Binary or continuous Continuous endpoints problematic Binary or continuous Assess clinical value? No Yes Yes
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