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Characterization of Finger Millet Blast Pathogen
   (Pyricularia grisea) and Its Management Using
         Biocontrol Agents and Fungicides

Getachew Gashaw, Tesfaye Alemu and Kassahun Tesfaye




 First Bio-Innovate Regional Scientific Conference
 United Nations Conference Centre (UNCC-ECA)
 Addis Ababa, Ethiopia, 25-27 February 2013
Content outline

Introduction

Objectives

Materials and methods

Results and Discussions

Conclusions and Recommendations

Acknowledgment
1. Introduction




                  1
2
2. Specific Objectives


 To isolate and characterize finger millet blast pathogen from

  various areas

 To study the effect of different cultural and growth factors of

  Pyricularia grisea in the laboratory

 To carry out pathogenicity test and estimate the yield losses

  caused by Pyricularia grisea

 To evaluate In Vitro antagonistic activities of Trichoderma and

  Pseudomonas species and fungicides against P. grisea
                                                                    3
3. Materials and Methods
Experimental site

 Mycological Research Laboratory

 In Vivo experimental conducted in the Department of Microbial,

  Cellular and Molecular Biology, Addis Ababa University
Study areas and samples collection

 (East and West Welega, Metekel, Awi, and West Gojam)

 The survey route followed major roads to towns and localities

  in
          45   districts separated by 10-12 km from each other 4
Isolation of Pyricularia grisea




                                  5
Cultural and morphological characterizations of P. grisea
 Surface texture, pigmentation and mycelial growth

      on different solid media
 All the media were sterilized, at 121°C for 15 minutes
 Colony diameters of each isolate in plates were measured in

  millimeter, at two days intervals for 10 days
 Mycelial colour, type of margin and sporulation were recorded
 Shape, colour, size (length & width), septation of conidia




                                                                  6
Effect of temperature levels on growth of P. grisea isolates
 Six isolates of Pyricularia grisea were grown on malt extract

  agar, at six temperatures (15, 20, 25, 30, 35 and 40OC)
 Colony diameters of each isolate were measured in millimeter

Effect of hydrogen ion concentration(pH) on P. grisea
  isolates
 Potato dextrose broth medium was used

 pH levels (3, 3.5, 4, 4.5, 5.0, 5.5, 6.0, 6.5, 7.0, 7.5 and 8.0)

 The dry weight of each isolate was measured

Carbon and Nitrogen utilizations P. grisea isolates                  7
Pathogenicity test
Evaluation of Finger millet varieties under green house condition
 Boneya, Local Check and Tadesse obtained from BARC

       sown in 21cm plastic pots filled with 5kg of autoclaved soil
 When the seedlings were six weeks old the leaves were;

       cleaned with sterile distilled water & predisposed to nearly 95%
        humidity for 24 hours (Sreenivasaprasad et al., 2005)
 Spore suspensions of 15 days old culture were adjusted to the

  concentration of 105spore/ml for all isolates
 Six weeks old finger millet seedlings were inoculated by spraying

  on leaves by using hand sprayer (Han et al., 2003) with controls     8
Pathogenicity test




a. Conidia spray on the foliage   b. Incubation of seedlings

                                                               9
Blast disease assessment




                           10
Disease assessment cont’d….
 Blast DS and DI was assessed according to the scale of Waller

  et al. (2002);     DS% = nxv/9N x100; Where:
 (n)= Number of plants in each category,

 (v) = Numerical values of symptoms category.

 (N)= Total number of plants,

 (9) = Maximum numerical value of symptom category.

  DI (%) = Number of infected plant units       X 100

           Total number (healthy and infected of units assessed)
                                                             11
Assessment of yield losses


 Finger millet yield loss was calculated using the equation

  developed by Mousanejad et al. (2010).




                                                               12
In Vitro evaluation of biocontrol agents and fungicides
against P. grisea isolates
 T.   harzianum (AUT1), T. viride (AUT2), and P. fluorescens
Dual culture method used (Rao, 2003, and Rangajaran et al., 2003)
Percentage of radial growth inhibition was calculated by

 Riungu et al. (2008)
The poisoned food technique (Nine and Thapliyal, 1993)
Stock concentrations of the fungicides (a.i) were used

Bayleton 50%, Curzate 43.95%, Ridomil 68%, Sancozeb 80%

Relative growth reduction for each rate of fungicide was calculated

  by Riungu et al. 2008.
One way ANOV procedures of SPSS statistical analysis software
                                                                   13
4. RESULTS AND DISCUSSIONS
Isolation of finger millet blast (Pyricularia grisea) isolates
 42 isolates of P. grisea isolated from diseased leaf, neck and

  finger/seed of finger millet weed and wild relative species from
  different locations




                                                                     14
Cultural and morphological characteristics of P. grisea isolates
  Cultural characteristics
   The colony of the isolates showed significant differences
   Growth rate and slight variations in colour

   Colony colors, isolates imparted on the different growth media

   Gray, greyish black, black and buff white colors

   Awoderu et al. (1991); Meena (2005)

       Pg.11    Pg.20    Pg.22
                                      Pg.26   Pg.40    Pg. 41




        HSEA
                                                                     15
Table 1. Evaluation of culture media for the growth of P. grisea




                                                                   16
Conidial characteristics of P. grisea isolates




                                                 17
Shape of conidia
Fig. 1. Microscopic observation of morphology of P. grisea isolates
                   Pg.11                         Pg.20




                                                                 18
Fig.2 Conidia and conidiophores of Pyricularia grisea isolates




                                               Mijan (2000)


                                                              19
Table 2. Conidial size of the six isolates of the pathogen after
       10 days incubation, at 27±1oC
No.   Isolate Range(μm)                        Average (μm)

1     Pg.11    21.05-28.80 x 6.55-9.54         19.35 x 6.85

2     Pg.20    18.01-24.03 x 6.84-10.28        20.50 x 8.77

3     Pg.22    15.66-24.37 x 7.70-12.90        18.32 x 10.57

4     Pg.26    22.79-29.77 x 6.87-12.13        23.98 x 9.50

5     Pg.40    24.36-29.48 x 8.35-11.92        25.72 x 10.14

6     Pg.41    26.91-35.43 x 6.35-9.20         31.17 x 7.78
                                                                   20
21
Table 3. Evaluation of mycelial growth of P.grisea at different
temperature levels




   Similarly, Arunkumar and Singh (1995) ;Suryanarayanan, (1996)   22
Table 4. Dry mycelial weight of the isolates of Pyricularia grisea
at different pH level




                                                                     23
Table 5. Effects carbon sources on mycelial growth of P. grisea isolates




Tochinai and Nakano (1940); Otsuka et al. (1965); Onofeghara et al. (1973)
                                                                             24
Table 6. Effect of nitrogen sources on mycelial growth of P. grisea isolates




                    Apparao (1956); Otsuka et al. (1965)                       25
Table 7. Average disease incidences and severities and their ranges
         in different agro climatic Regions of Ethiopia.
Ecological    Disease       Av. disease      Disease      Av. disease         Altitude
  zone       incidence       incidence       severity         severity       Mean±SD
                (%)          (% ) ±SD           (%)           (%)±SD

   East       35-68.3       54.1±10.30a       18-35.8         28.6±6.7ab   1862.1±165.9ab
 Wellega
  West        45-76.7      63.03±11.04a       22.5-50         34.6±8.4a    1726.2±129.7b
 Wellega
 Metekel       10-75         50.8±26.5a        0-25       22.3±23.1ab       1152±153.8c


   Awi         20-65        46.7±15.00a        5-27           15.7±8.1b    1913.3±277.9ab


  West         37-95         57.9±16.5a        5-69       23.7±16.3ab      1990.4±185.9a
 Gojjam
                                                                                     28
 Values in the same letters are not significantly different                               26
Table 8. Percentage of disease incidence and severity under
        green house condition




                                                              27
Table 9. Assessment of yield losses caused by P. grisea isolates on
   the three finger millet varieties under green house condition




   Takan et al. (2004); Adipala (1989); Ahmad et al. (2011)           28
Table10. In vitro evaluation of antagonistic activity of Trichoderma
species and P. fluorescens against P. grisea isolates




     Harish et al. (2007) ;   Rosales et al. (1995)                    29
In vitro testing cont’d……..
Pg.11 Pg.20 Pg.22




Pg.26 Pg.40   Pg.41

    AAUT1             AUT2         Pseudomonas fluorescens




                         Control
                                                         30
Table 10. Mean percent of mycelial growth inhibition of the test isolates
on PDA amended with fungicides after 7days of incubation, at 27 ±1oC
 Isolates                   Mean inhibition percentage by*
             Bayleton     Curzate     Ridomil      Sancozeb    Mean ±SD

  Pg.11      73.9±4.6a   69.5±13.4a   72.2±0.7c    85.5±2.0a    75.3±9.0a

  Pg.20      70.7±7.0a   69.4±10.3a   80.5±3.0a    87.3±2.1a    77.0±9.5a

  Pg.22      68.1±7.0a   67.0±12.1a   79.4±3.1ab   88.4±1.8a    75.7±11.1a

  Pg.26      74.9±3.2a   73.3±11.3a   78.3±1.2ab   86.9±1.5a    78.3±7.6a

  Pg.40      73.6±5.9a   75.3±9.9a    82.5±3.4a    88.0±3.3a    79.8±8.2a

  Pg.41      70.1±5.4a   69.6±12.7a   75.7±4.3bc   86.6±1.4a    75.5±9.6a

Mean ±SD     71.9±5.6    70.7 ±10.7   78.1±4.3      87.1±2.1    76.9±9.2


            Percich et al. (1997)                                            31
In vitro evaluation of fungicides cont’d….


                   Sancozeb

   200PPM

     500PPM

     800PPM

   1000PPM



                                             32
5. Conclusions and recommendations




                                     33
In Vitro evaluation of the effectiveness of biological agents on the

  mycelia growth of the isolates, in general, showed that the
        Pseudomonas fluorescence was less effective than the two
         Trichoderma species (AUT1 and AUT2)
The most effective fungicide was found to be Sancozeb followed by

  Ridomil, Bayleton, and Curzate.
The interspecific relative susceptibility of P. grisea isolates showed

  a pattern of Pg.11 > Pg.22 > Pg.41> Pg.20> Pg.26> Pg.40 on all
  fungicides.


                                                                          34
Recommendation




                 35
ACKNOWLEDGEMENT



 BioInnovate Eastern Africa

 Bako Agricultural Research Center

 Department of Microbial Cellular Molecular Biology,

 Collage of Natural Sciences, Addis Ababa University.




                                                        36

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Characterization of finger millet blast pathogen (Pyricularia grisea) and Its management using biocontrol agents and fungicides

  • 1. Characterization of Finger Millet Blast Pathogen (Pyricularia grisea) and Its Management Using Biocontrol Agents and Fungicides Getachew Gashaw, Tesfaye Alemu and Kassahun Tesfaye First Bio-Innovate Regional Scientific Conference United Nations Conference Centre (UNCC-ECA) Addis Ababa, Ethiopia, 25-27 February 2013
  • 2. Content outline Introduction Objectives Materials and methods Results and Discussions Conclusions and Recommendations Acknowledgment
  • 4. 2
  • 5. 2. Specific Objectives  To isolate and characterize finger millet blast pathogen from various areas  To study the effect of different cultural and growth factors of Pyricularia grisea in the laboratory  To carry out pathogenicity test and estimate the yield losses caused by Pyricularia grisea  To evaluate In Vitro antagonistic activities of Trichoderma and Pseudomonas species and fungicides against P. grisea 3
  • 6. 3. Materials and Methods Experimental site  Mycological Research Laboratory  In Vivo experimental conducted in the Department of Microbial, Cellular and Molecular Biology, Addis Ababa University Study areas and samples collection  (East and West Welega, Metekel, Awi, and West Gojam)  The survey route followed major roads to towns and localities in  45 districts separated by 10-12 km from each other 4
  • 8. Cultural and morphological characterizations of P. grisea  Surface texture, pigmentation and mycelial growth on different solid media  All the media were sterilized, at 121°C for 15 minutes  Colony diameters of each isolate in plates were measured in millimeter, at two days intervals for 10 days  Mycelial colour, type of margin and sporulation were recorded  Shape, colour, size (length & width), septation of conidia 6
  • 9. Effect of temperature levels on growth of P. grisea isolates  Six isolates of Pyricularia grisea were grown on malt extract agar, at six temperatures (15, 20, 25, 30, 35 and 40OC)  Colony diameters of each isolate were measured in millimeter Effect of hydrogen ion concentration(pH) on P. grisea isolates  Potato dextrose broth medium was used  pH levels (3, 3.5, 4, 4.5, 5.0, 5.5, 6.0, 6.5, 7.0, 7.5 and 8.0)  The dry weight of each isolate was measured Carbon and Nitrogen utilizations P. grisea isolates 7
  • 10. Pathogenicity test Evaluation of Finger millet varieties under green house condition  Boneya, Local Check and Tadesse obtained from BARC  sown in 21cm plastic pots filled with 5kg of autoclaved soil  When the seedlings were six weeks old the leaves were;  cleaned with sterile distilled water & predisposed to nearly 95% humidity for 24 hours (Sreenivasaprasad et al., 2005)  Spore suspensions of 15 days old culture were adjusted to the concentration of 105spore/ml for all isolates  Six weeks old finger millet seedlings were inoculated by spraying on leaves by using hand sprayer (Han et al., 2003) with controls 8
  • 11. Pathogenicity test a. Conidia spray on the foliage b. Incubation of seedlings 9
  • 13. Disease assessment cont’d….  Blast DS and DI was assessed according to the scale of Waller et al. (2002); DS% = nxv/9N x100; Where:  (n)= Number of plants in each category,  (v) = Numerical values of symptoms category.  (N)= Total number of plants,  (9) = Maximum numerical value of symptom category. DI (%) = Number of infected plant units X 100 Total number (healthy and infected of units assessed) 11
  • 14. Assessment of yield losses  Finger millet yield loss was calculated using the equation developed by Mousanejad et al. (2010). 12
  • 15. In Vitro evaluation of biocontrol agents and fungicides against P. grisea isolates  T. harzianum (AUT1), T. viride (AUT2), and P. fluorescens Dual culture method used (Rao, 2003, and Rangajaran et al., 2003) Percentage of radial growth inhibition was calculated by Riungu et al. (2008) The poisoned food technique (Nine and Thapliyal, 1993) Stock concentrations of the fungicides (a.i) were used Bayleton 50%, Curzate 43.95%, Ridomil 68%, Sancozeb 80% Relative growth reduction for each rate of fungicide was calculated by Riungu et al. 2008. One way ANOV procedures of SPSS statistical analysis software 13
  • 16. 4. RESULTS AND DISCUSSIONS Isolation of finger millet blast (Pyricularia grisea) isolates  42 isolates of P. grisea isolated from diseased leaf, neck and finger/seed of finger millet weed and wild relative species from different locations 14
  • 17. Cultural and morphological characteristics of P. grisea isolates Cultural characteristics  The colony of the isolates showed significant differences  Growth rate and slight variations in colour  Colony colors, isolates imparted on the different growth media  Gray, greyish black, black and buff white colors  Awoderu et al. (1991); Meena (2005) Pg.11 Pg.20 Pg.22 Pg.26 Pg.40 Pg. 41 HSEA 15
  • 18. Table 1. Evaluation of culture media for the growth of P. grisea 16
  • 19. Conidial characteristics of P. grisea isolates 17
  • 20. Shape of conidia Fig. 1. Microscopic observation of morphology of P. grisea isolates Pg.11 Pg.20 18
  • 21. Fig.2 Conidia and conidiophores of Pyricularia grisea isolates Mijan (2000) 19
  • 22. Table 2. Conidial size of the six isolates of the pathogen after 10 days incubation, at 27±1oC No. Isolate Range(μm) Average (μm) 1 Pg.11 21.05-28.80 x 6.55-9.54 19.35 x 6.85 2 Pg.20 18.01-24.03 x 6.84-10.28 20.50 x 8.77 3 Pg.22 15.66-24.37 x 7.70-12.90 18.32 x 10.57 4 Pg.26 22.79-29.77 x 6.87-12.13 23.98 x 9.50 5 Pg.40 24.36-29.48 x 8.35-11.92 25.72 x 10.14 6 Pg.41 26.91-35.43 x 6.35-9.20 31.17 x 7.78 20
  • 23. 21
  • 24. Table 3. Evaluation of mycelial growth of P.grisea at different temperature levels Similarly, Arunkumar and Singh (1995) ;Suryanarayanan, (1996) 22
  • 25. Table 4. Dry mycelial weight of the isolates of Pyricularia grisea at different pH level 23
  • 26. Table 5. Effects carbon sources on mycelial growth of P. grisea isolates Tochinai and Nakano (1940); Otsuka et al. (1965); Onofeghara et al. (1973) 24
  • 27. Table 6. Effect of nitrogen sources on mycelial growth of P. grisea isolates Apparao (1956); Otsuka et al. (1965) 25
  • 28. Table 7. Average disease incidences and severities and their ranges in different agro climatic Regions of Ethiopia. Ecological Disease Av. disease Disease Av. disease Altitude zone incidence incidence severity severity Mean±SD (%) (% ) ±SD (%) (%)±SD East 35-68.3 54.1±10.30a 18-35.8 28.6±6.7ab 1862.1±165.9ab Wellega West 45-76.7 63.03±11.04a 22.5-50 34.6±8.4a 1726.2±129.7b Wellega Metekel 10-75 50.8±26.5a 0-25 22.3±23.1ab 1152±153.8c Awi 20-65 46.7±15.00a 5-27 15.7±8.1b 1913.3±277.9ab West 37-95 57.9±16.5a 5-69 23.7±16.3ab 1990.4±185.9a Gojjam 28 Values in the same letters are not significantly different 26
  • 29. Table 8. Percentage of disease incidence and severity under green house condition 27
  • 30. Table 9. Assessment of yield losses caused by P. grisea isolates on the three finger millet varieties under green house condition Takan et al. (2004); Adipala (1989); Ahmad et al. (2011) 28
  • 31. Table10. In vitro evaluation of antagonistic activity of Trichoderma species and P. fluorescens against P. grisea isolates Harish et al. (2007) ; Rosales et al. (1995) 29
  • 32. In vitro testing cont’d…….. Pg.11 Pg.20 Pg.22 Pg.26 Pg.40 Pg.41 AAUT1 AUT2 Pseudomonas fluorescens Control 30
  • 33. Table 10. Mean percent of mycelial growth inhibition of the test isolates on PDA amended with fungicides after 7days of incubation, at 27 ±1oC Isolates Mean inhibition percentage by* Bayleton Curzate Ridomil Sancozeb Mean ±SD Pg.11 73.9±4.6a 69.5±13.4a 72.2±0.7c 85.5±2.0a 75.3±9.0a Pg.20 70.7±7.0a 69.4±10.3a 80.5±3.0a 87.3±2.1a 77.0±9.5a Pg.22 68.1±7.0a 67.0±12.1a 79.4±3.1ab 88.4±1.8a 75.7±11.1a Pg.26 74.9±3.2a 73.3±11.3a 78.3±1.2ab 86.9±1.5a 78.3±7.6a Pg.40 73.6±5.9a 75.3±9.9a 82.5±3.4a 88.0±3.3a 79.8±8.2a Pg.41 70.1±5.4a 69.6±12.7a 75.7±4.3bc 86.6±1.4a 75.5±9.6a Mean ±SD 71.9±5.6 70.7 ±10.7 78.1±4.3 87.1±2.1 76.9±9.2 Percich et al. (1997) 31
  • 34. In vitro evaluation of fungicides cont’d…. Sancozeb 200PPM 500PPM 800PPM 1000PPM 32
  • 35. 5. Conclusions and recommendations 33
  • 36. In Vitro evaluation of the effectiveness of biological agents on the mycelia growth of the isolates, in general, showed that the  Pseudomonas fluorescence was less effective than the two Trichoderma species (AUT1 and AUT2) The most effective fungicide was found to be Sancozeb followed by Ridomil, Bayleton, and Curzate. The interspecific relative susceptibility of P. grisea isolates showed a pattern of Pg.11 > Pg.22 > Pg.41> Pg.20> Pg.26> Pg.40 on all fungicides. 34
  • 38. ACKNOWLEDGEMENT  BioInnovate Eastern Africa  Bako Agricultural Research Center  Department of Microbial Cellular Molecular Biology, Collage of Natural Sciences, Addis Ababa University. 36