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Feature Selection  for Tree Species Identification  in Very High Resolution Satellite Images   Matthieu Molinier and Heikki Astola VTT Technical Research Centre of Finland [email_address] ,  [email_address] IGARSS 2011 Vancouver, 28.7.2011
Introduction ,[object Object],[object Object],[object Object],[object Object],[object Object]
NewForest approach in forest variable estimation Modelling based on satellite  image pixel reflectances  and contextual features  Individual tree crown (ITC) detection and  crown width estimation  Combining data to  predict total amount  and  size variation  by species segmentation estimates Refined, more accurate species-wise estimates
Study site ,[object Object],[object Object],[object Object],[object Object],Karttula GeoEye image, 26.6.2009, RGB NIR 10.5 km x 11.5 km, 3% clouds Mixed forest, spruce dominated 25% pine,  45% spruce , 30% deciduous (mainly birch)
Optical image data pre-processing ,[object Object],[object Object],[object Object],[object Object]
Ground reference data ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],GeoEye image : 10.5 km x 11.5 km
Input for feature selection – 35 + 4 features  R   G   B   NIR  PAN mean intensity within  1.5 m  radius around  tree candidates  ( TC ) SPECTRAL (5) – set A CONTEXTUAL (9) – set B From  PAN ,  7.5 m  radius around  TC mean mean / median skewness kurtosis contrast pm1  : mean of brightest pixels ps1  : std of brightest pixels pm2  : mean of darkest pixels ps2  : std of darkest pixels SEGMENT-WISE (21) – set C From  PAN ,  3  segment sizes :  50 m 2 , 85 m 2 , 125 m 2 mean mean / median   skewness kurtosis std  : standard deviation pmean  : partial mean pstd  : partial standard deviation Probe variables random vectors or random permutations of a feature vector probe_gauss1 ,  probe_gauss2 probe_shuffle1 ,  probe_shuffle2
Class definitions and training scheme  WHOLE DATASET  (1164 samples) 900 trees, 264 non-trees TESTING (391) MODEL DESIGN  (773) 2 / 3 1 / 3 TRAINING (512) VAL (261) 2 / 3 1 / 3 stratified sampling to preserve  classes proportions model building ranking Class # Class name 1 pine 2 spruce 3 deciduous 4 shadow 5 open area / sunlit 6 bare ground 7 green vegetation Tree classes Non-tree classes
Feature selection preparation (Guyon et al., 2003) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Feature selection and image classification ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
6-10  features is enough Spectral features  performed best segment-wise features not suited to  mixed species  study Overall classification accuracy on tree classes  over 80% Probe variables  selected more often in the first places with LDA than with kNN : linear classifier too simple. Quadratic LDA was overfitting. kNN, k=5  best overall performance, and lowest difference from training to validation error => lower risk of  overfitting
Example of tree species classification map pine : 76 % spruce : 76 % deciduous : 88 % non-forest ,[object Object],[object Object],[object Object],[object Object]
Predicted species-wise stem numbers vs. field plot data Nspruce  [stems/ha] Npine  [stems/ha] Predicted [stems/ha] Ndecid  [stems/ha] ,[object Object],[object Object],[object Object],0 500 1000 1500 2000 0 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 True number of spruces/field plot Predicted number of spruces/field plot y=0.98*x + 137.1 y=0.98*x + 137.1 y=0.98*x + 137.1 R 2  = 0.24 y=0.98*x + 137.1 y=0.33*x + 239.8 y=0.56*x + 21.0 R 2  = 0.54 True number of broadleaved/field plot Predicted number of broadleaved/field plot y=0.85*x + 45.0 R 2  = 0.34 True number of pines/field plot Predicted number of pines/field plot 0 500 1000 1500 2000 2500 0 500 1000 1500 2000 2500 0 500 1000 1500 2000 0 200 400 600 800 1000 1200 1400 1600 1800 2000
Conclusions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[email_address] [email_address] Thank you

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Feature Selection for Tree Species ID in VHR Satellite Images

  • 1. Feature Selection for Tree Species Identification in Very High Resolution Satellite Images Matthieu Molinier and Heikki Astola VTT Technical Research Centre of Finland [email_address] , [email_address] IGARSS 2011 Vancouver, 28.7.2011
  • 2.
  • 3. NewForest approach in forest variable estimation Modelling based on satellite image pixel reflectances and contextual features Individual tree crown (ITC) detection and crown width estimation Combining data to predict total amount and size variation by species segmentation estimates Refined, more accurate species-wise estimates
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  • 6.
  • 7. Input for feature selection – 35 + 4 features R G B NIR PAN mean intensity within 1.5 m radius around tree candidates ( TC ) SPECTRAL (5) – set A CONTEXTUAL (9) – set B From PAN , 7.5 m radius around TC mean mean / median skewness kurtosis contrast pm1 : mean of brightest pixels ps1 : std of brightest pixels pm2 : mean of darkest pixels ps2 : std of darkest pixels SEGMENT-WISE (21) – set C From PAN , 3 segment sizes : 50 m 2 , 85 m 2 , 125 m 2 mean mean / median skewness kurtosis std : standard deviation pmean : partial mean pstd : partial standard deviation Probe variables random vectors or random permutations of a feature vector probe_gauss1 , probe_gauss2 probe_shuffle1 , probe_shuffle2
  • 8. Class definitions and training scheme WHOLE DATASET (1164 samples) 900 trees, 264 non-trees TESTING (391) MODEL DESIGN (773) 2 / 3 1 / 3 TRAINING (512) VAL (261) 2 / 3 1 / 3 stratified sampling to preserve classes proportions model building ranking Class # Class name 1 pine 2 spruce 3 deciduous 4 shadow 5 open area / sunlit 6 bare ground 7 green vegetation Tree classes Non-tree classes
  • 9.
  • 10.
  • 11. 6-10 features is enough Spectral features performed best segment-wise features not suited to mixed species study Overall classification accuracy on tree classes over 80% Probe variables selected more often in the first places with LDA than with kNN : linear classifier too simple. Quadratic LDA was overfitting. kNN, k=5 best overall performance, and lowest difference from training to validation error => lower risk of overfitting
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  • 14.

Notes de l'éditeur

  1. This presentation was supposed to be given on Monday but I could not make it because the flight from London was delayed.
  2. Good quality, not many clouds Spruce dominant species
  3. 100% pure species plots for training because : mixed plots not good for contextual features (radius of analysis around the tree, overlap) Possible to obtain both plot level error and stand level error Not to mix the datasets Train and test data not measured exactly in the same way, and not by the same operators – one by forest centres (public), one by a private company
  4. 1.5m : signature only of the tree 7.5 m : context – neighboring trees Partial mean and std : cutting the tails of the distributions Permutation of the feature vector (all tres / samples) Probe variables are obviously not related or correlated to the target forest variables Are the true variables more relevant than the probes ? If a variable is ranked worse than a probe for a given classification task, it should not be selected
  5. Primary interest in tree classes Keep classes proportions
  6. ATTENTION : correlation between two features does not mean we can eliminate one from the selection (toy examples from Guyon et al.)
  7. Always start from the simplest model – linear Nonlinear but keep it simple
  8. Explain the axes Accuracy drops after 82%
  9. Thank you for staying until the end