SlideShare une entreprise Scribd logo
1  sur  30
Lars Juhl Jensen
Mining the Antibodypedia
Research barely in progress seminar
web resource
commercial antibodies
Antibodypedia AB
Nature Publishing Group
query for a protein
Creative Commons
no download file
web robot
scraped all data
mapped identifiers
STRING
579,038 antibodies
16,827 human proteins
variable quality
rated for various uses
Western blot
ELISA
immunoprecipitation
immunoflourescence
immunohistochemistry
flow cytometry
combine these ratings
unified quality score
quality scores
Western blot
flow cytometry
immunoflourescence
immunohistochemistry
immunoprecipitation
ELISA
immunocytochemistry
protein array
gel shift
chromatin immunoprecipitation
proximity ligation assay
blocking/neutralizing
functional assay
radioimmunoassay
immunoelectron microscopy
thank you!

Contenu connexe

Tendances

Genomics: Fish DNA Barcoding & Protein Profiling Workshop
Genomics: Fish DNA Barcoding & Protein Profiling WorkshopGenomics: Fish DNA Barcoding & Protein Profiling Workshop
Genomics: Fish DNA Barcoding & Protein Profiling Workshop
felixjvalles
 
Waksman Student Scholars Program Poster
Waksman Student Scholars Program PosterWaksman Student Scholars Program Poster
Waksman Student Scholars Program Poster
Wesley Kwong
 
ANTINUCLEAR ANTIBODY
ANTINUCLEAR  ANTIBODYANTINUCLEAR  ANTIBODY
ANTINUCLEAR ANTIBODY
Musa Khan
 

Tendances (20)

Catalytic antibodies
Catalytic antibodiesCatalytic antibodies
Catalytic antibodies
 
Autoantibodies detection methods
Autoantibodies detection methodsAutoantibodies detection methods
Autoantibodies detection methods
 
Antibody phage display technology
Antibody phage display technologyAntibody phage display technology
Antibody phage display technology
 
Indirect Flow Cytometry Protocol
Indirect Flow Cytometry ProtocolIndirect Flow Cytometry Protocol
Indirect Flow Cytometry Protocol
 
Genomics: Fish DNA Barcoding & Protein Profiling Workshop
Genomics: Fish DNA Barcoding & Protein Profiling WorkshopGenomics: Fish DNA Barcoding & Protein Profiling Workshop
Genomics: Fish DNA Barcoding & Protein Profiling Workshop
 
Sandwich ELISA Protocol
Sandwich ELISA ProtocolSandwich ELISA Protocol
Sandwich ELISA Protocol
 
Integration of biomedical literature and databases
Integration of biomedical literature and databasesIntegration of biomedical literature and databases
Integration of biomedical literature and databases
 
college-of-american-pathologists-eqas-for-luminex-antibody-test-in-a-stand -a...
college-of-american-pathologists-eqas-for-luminex-antibody-test-in-a-stand -a...college-of-american-pathologists-eqas-for-luminex-antibody-test-in-a-stand -a...
college-of-american-pathologists-eqas-for-luminex-antibody-test-in-a-stand -a...
 
Special Investigations for Biomedical Students
Special Investigations for Biomedical StudentsSpecial Investigations for Biomedical Students
Special Investigations for Biomedical Students
 
Phage display technology
Phage display technologyPhage display technology
Phage display technology
 
Monoclonal and polyclonal antibody
Monoclonal and polyclonal antibodyMonoclonal and polyclonal antibody
Monoclonal and polyclonal antibody
 
Gene Array Analyzer
Gene Array AnalyzerGene Array Analyzer
Gene Array Analyzer
 
Spotlight on i psc reprogramming
Spotlight on i psc reprogrammingSpotlight on i psc reprogramming
Spotlight on i psc reprogramming
 
iPSC-derived Cardiomyocytes
iPSC-derived CardiomyocytesiPSC-derived Cardiomyocytes
iPSC-derived Cardiomyocytes
 
Spotlight on ipsc reprogramming
Spotlight on ipsc reprogrammingSpotlight on ipsc reprogramming
Spotlight on ipsc reprogramming
 
Immunity
ImmunityImmunity
Immunity
 
Overview 2014
Overview  2014Overview  2014
Overview 2014
 
Waksman Student Scholars Program Poster
Waksman Student Scholars Program PosterWaksman Student Scholars Program Poster
Waksman Student Scholars Program Poster
 
Ana To Ena
Ana To EnaAna To Ena
Ana To Ena
 
ANTINUCLEAR ANTIBODY
ANTINUCLEAR  ANTIBODYANTINUCLEAR  ANTIBODY
ANTINUCLEAR ANTIBODY
 

Similaire à Mining the Antibodypedia

Maha cv-linkedin-03 June,2015
Maha cv-linkedin-03 June,2015Maha cv-linkedin-03 June,2015
Maha cv-linkedin-03 June,2015
Maha Rizk, MB(ASCP)
 
SteilLinkedInResume2015
SteilLinkedInResume2015SteilLinkedInResume2015
SteilLinkedInResume2015
Benjamin Steil
 
Informal presentation on bioinformatics
Informal presentation on bioinformaticsInformal presentation on bioinformatics
Informal presentation on bioinformatics
Atai Rabby
 

Similaire à Mining the Antibodypedia (20)

Maha cv-03 march15
Maha cv-03 march15Maha cv-03 march15
Maha cv-03 march15
 
Microbial typing
Microbial typingMicrobial typing
Microbial typing
 
Antibody based techniques
Antibody based techniquesAntibody based techniques
Antibody based techniques
 
Maha cv-linkedin-03 June,2015
Maha cv-linkedin-03 June,2015Maha cv-linkedin-03 June,2015
Maha cv-linkedin-03 June,2015
 
ENZYME LINKED IMMUNOSORBENT IMMMUNO ASSAY
ENZYME LINKED IMMUNOSORBENT IMMMUNO ASSAYENZYME LINKED IMMUNOSORBENT IMMMUNO ASSAY
ENZYME LINKED IMMUNOSORBENT IMMMUNO ASSAY
 
STRING - Prediction of a functional association network for the yeast mitocho...
STRING - Prediction of a functional association network for the yeast mitocho...STRING - Prediction of a functional association network for the yeast mitocho...
STRING - Prediction of a functional association network for the yeast mitocho...
 
SteilLinkedInResume2015
SteilLinkedInResume2015SteilLinkedInResume2015
SteilLinkedInResume2015
 
Maha cv-linkedin-06 june2015
Maha cv-linkedin-06 june2015Maha cv-linkedin-06 june2015
Maha cv-linkedin-06 june2015
 
Antibody based techniques
Antibody based techniquesAntibody based techniques
Antibody based techniques
 
Informal presentation on bioinformatics
Informal presentation on bioinformaticsInformal presentation on bioinformatics
Informal presentation on bioinformatics
 
Elisa
ElisaElisa
Elisa
 
Presentation of Frank Hills in 1st International Antibody Validation Forum 2014
Presentation of Frank Hills in 1st International Antibody Validation Forum 2014Presentation of Frank Hills in 1st International Antibody Validation Forum 2014
Presentation of Frank Hills in 1st International Antibody Validation Forum 2014
 
ELIZA method
ELIZA methodELIZA method
ELIZA method
 
Elisa ria
Elisa ria Elisa ria
Elisa ria
 
Elisa ppt nitub-02
Elisa ppt nitub-02Elisa ppt nitub-02
Elisa ppt nitub-02
 
ELISA
ELISAELISA
ELISA
 
Cytokine Detection Technologies
Cytokine Detection TechnologiesCytokine Detection Technologies
Cytokine Detection Technologies
 
Cytokine Detection Technology.pdf
Cytokine Detection Technology.pdfCytokine Detection Technology.pdf
Cytokine Detection Technology.pdf
 
ELISA.pptx
ELISA.pptxELISA.pptx
ELISA.pptx
 
elisa-220428090127.pdf
elisa-220428090127.pdfelisa-220428090127.pdf
elisa-220428090127.pdf
 

Plus de Lars Juhl Jensen

Plus de Lars Juhl Jensen (20)

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicine
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotation
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using Cytoscape
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH: Network integration of heterogeneous dataSTRING & STITCH: Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous data
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured text
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and Cytoscape
 
Cellular networks
Cellular networksCellular networks
Cellular networks
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and text
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous data
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognition
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and text
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactions
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network Biology
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritization
 

Dernier

Modular Monolith - a Practical Alternative to Microservices @ Devoxx UK 2024
Modular Monolith - a Practical Alternative to Microservices @ Devoxx UK 2024Modular Monolith - a Practical Alternative to Microservices @ Devoxx UK 2024
Modular Monolith - a Practical Alternative to Microservices @ Devoxx UK 2024
Victor Rentea
 
Finding Java's Hidden Performance Traps @ DevoxxUK 2024
Finding Java's Hidden Performance Traps @ DevoxxUK 2024Finding Java's Hidden Performance Traps @ DevoxxUK 2024
Finding Java's Hidden Performance Traps @ DevoxxUK 2024
Victor Rentea
 
Cloud Frontiers: A Deep Dive into Serverless Spatial Data and FME
Cloud Frontiers:  A Deep Dive into Serverless Spatial Data and FMECloud Frontiers:  A Deep Dive into Serverless Spatial Data and FME
Cloud Frontiers: A Deep Dive into Serverless Spatial Data and FME
Safe Software
 

Dernier (20)

"I see eyes in my soup": How Delivery Hero implemented the safety system for ...
"I see eyes in my soup": How Delivery Hero implemented the safety system for ..."I see eyes in my soup": How Delivery Hero implemented the safety system for ...
"I see eyes in my soup": How Delivery Hero implemented the safety system for ...
 
Apidays New York 2024 - APIs in 2030: The Risk of Technological Sleepwalk by ...
Apidays New York 2024 - APIs in 2030: The Risk of Technological Sleepwalk by ...Apidays New York 2024 - APIs in 2030: The Risk of Technological Sleepwalk by ...
Apidays New York 2024 - APIs in 2030: The Risk of Technological Sleepwalk by ...
 
Corporate and higher education May webinar.pptx
Corporate and higher education May webinar.pptxCorporate and higher education May webinar.pptx
Corporate and higher education May webinar.pptx
 
Spring Boot vs Quarkus the ultimate battle - DevoxxUK
Spring Boot vs Quarkus the ultimate battle - DevoxxUKSpring Boot vs Quarkus the ultimate battle - DevoxxUK
Spring Boot vs Quarkus the ultimate battle - DevoxxUK
 
Emergent Methods: Multi-lingual narrative tracking in the news - real-time ex...
Emergent Methods: Multi-lingual narrative tracking in the news - real-time ex...Emergent Methods: Multi-lingual narrative tracking in the news - real-time ex...
Emergent Methods: Multi-lingual narrative tracking in the news - real-time ex...
 
Modular Monolith - a Practical Alternative to Microservices @ Devoxx UK 2024
Modular Monolith - a Practical Alternative to Microservices @ Devoxx UK 2024Modular Monolith - a Practical Alternative to Microservices @ Devoxx UK 2024
Modular Monolith - a Practical Alternative to Microservices @ Devoxx UK 2024
 
DBX First Quarter 2024 Investor Presentation
DBX First Quarter 2024 Investor PresentationDBX First Quarter 2024 Investor Presentation
DBX First Quarter 2024 Investor Presentation
 
ICT role in 21st century education and its challenges
ICT role in 21st century education and its challengesICT role in 21st century education and its challenges
ICT role in 21st century education and its challenges
 
Finding Java's Hidden Performance Traps @ DevoxxUK 2024
Finding Java's Hidden Performance Traps @ DevoxxUK 2024Finding Java's Hidden Performance Traps @ DevoxxUK 2024
Finding Java's Hidden Performance Traps @ DevoxxUK 2024
 
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost SavingRepurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
 
Ransomware_Q4_2023. The report. [EN].pdf
Ransomware_Q4_2023. The report. [EN].pdfRansomware_Q4_2023. The report. [EN].pdf
Ransomware_Q4_2023. The report. [EN].pdf
 
Cloud Frontiers: A Deep Dive into Serverless Spatial Data and FME
Cloud Frontiers:  A Deep Dive into Serverless Spatial Data and FMECloud Frontiers:  A Deep Dive into Serverless Spatial Data and FME
Cloud Frontiers: A Deep Dive into Serverless Spatial Data and FME
 
EMPOWERMENT TECHNOLOGY GRADE 11 QUARTER 2 REVIEWER
EMPOWERMENT TECHNOLOGY GRADE 11 QUARTER 2 REVIEWEREMPOWERMENT TECHNOLOGY GRADE 11 QUARTER 2 REVIEWER
EMPOWERMENT TECHNOLOGY GRADE 11 QUARTER 2 REVIEWER
 
TrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
TrustArc Webinar - Unlock the Power of AI-Driven Data DiscoveryTrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
TrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
 
MINDCTI Revenue Release Quarter One 2024
MINDCTI Revenue Release Quarter One 2024MINDCTI Revenue Release Quarter One 2024
MINDCTI Revenue Release Quarter One 2024
 
AXA XL - Insurer Innovation Award Americas 2024
AXA XL - Insurer Innovation Award Americas 2024AXA XL - Insurer Innovation Award Americas 2024
AXA XL - Insurer Innovation Award Americas 2024
 
Strategize a Smooth Tenant-to-tenant Migration and Copilot Takeoff
Strategize a Smooth Tenant-to-tenant Migration and Copilot TakeoffStrategize a Smooth Tenant-to-tenant Migration and Copilot Takeoff
Strategize a Smooth Tenant-to-tenant Migration and Copilot Takeoff
 
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemkeProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
 
Rising Above_ Dubai Floods and the Fortitude of Dubai International Airport.pdf
Rising Above_ Dubai Floods and the Fortitude of Dubai International Airport.pdfRising Above_ Dubai Floods and the Fortitude of Dubai International Airport.pdf
Rising Above_ Dubai Floods and the Fortitude of Dubai International Airport.pdf
 
Artificial Intelligence Chap.5 : Uncertainty
Artificial Intelligence Chap.5 : UncertaintyArtificial Intelligence Chap.5 : Uncertainty
Artificial Intelligence Chap.5 : Uncertainty