SlideShare une entreprise Scribd logo
1  sur  32
20
DB                                 

                                   
       2008/08/07

     kaneko.satoko(at)ocha.ac.jp
molecular_function [GO:0003674]
   molecular transducer activity [GO:0060089]
       signal transducer activity [GO:0004871]
           receptor activity [GO:0004872]
                transmembrane receptor activity [GO:0004888]
                    G-protein coupled receptor activity [GO:0004930]
                        rhodopsin-like receptor activity [GO:0001584]
22.66kb               Reverse strand




8 exons, CDS 1446bp (481a.a.)
(5) processed (pseudo)gene,
                 unprocessed (pseudo)gene

                                        a
                             a'
                                                           unprocessed gene
                                                            duplicated gene
                  a
                 mRNA               splicing           

                                    
                                                            


                                        
                           a''
                 processed gene 
pseudogene   premature stop codon            (insertion)        (deletion)
ID   ID
1

        [apple mark+C]
  2 CotEditor
           [apple mark+V]
     makorin.fasta

               blat


    3       BLAST
1
    
                             [apple mark+V]




        2                       Mus musculus
    
    dna database

        3 Search Tool BLAT

       RUN

        BLAT
[apple mark+A]
          [apple mark+C]
CotEditor            [apple mark
+C] makorin.blat
[Alignment Locations vs. Karyotype]




[Alignment Locations vs. Query]
query


[Alignment Summary]
query
query
(6)                        
BLAST (Basic Local Alignment Search Tool)
                        alignment
                                                   

            
         
           
    
                     Arg Ser Val

        
             
       
                         Thr Ser Gly
                                                       Tyr    Val Arg
        
                 
       
                5'-tacgtcaggta-3'                
        
             
           
            
                                                   3'-atgcagtccat-5'
                                                       Met Gln Ser
        
                 
   
                
         Cys Ser Pro
                                                             Ala Val     His
        
             
       
            


BLAT (Blast Like Alignment Tool)
query/database 4,11(amino acid, DNA)-mer

     EST
Molecular function and domain of rhodopsin-like receptor
Molecular function and domain of rhodopsin-like receptor
Molecular function and domain of rhodopsin-like receptor
Molecular function and domain of rhodopsin-like receptor
Molecular function and domain of rhodopsin-like receptor
Molecular function and domain of rhodopsin-like receptor
Molecular function and domain of rhodopsin-like receptor
Molecular function and domain of rhodopsin-like receptor

Contenu connexe

Plus de sesejun

RNAseqによる変動遺伝子抽出の統計: A Review
RNAseqによる変動遺伝子抽出の統計: A ReviewRNAseqによる変動遺伝子抽出の統計: A Review
RNAseqによる変動遺伝子抽出の統計: A Reviewsesejun
 
バイオインフォマティクスによる遺伝子発現解析
バイオインフォマティクスによる遺伝子発現解析バイオインフォマティクスによる遺伝子発現解析
バイオインフォマティクスによる遺伝子発現解析sesejun
 
次世代シーケンサが求める機械学習
次世代シーケンサが求める機械学習次世代シーケンサが求める機械学習
次世代シーケンサが求める機械学習sesejun
 
20110602labseminar pub
20110602labseminar pub20110602labseminar pub
20110602labseminar pubsesejun
 
20110524zurichngs 2nd pub
20110524zurichngs 2nd pub20110524zurichngs 2nd pub
20110524zurichngs 2nd pubsesejun
 
20110524zurichngs 1st pub
20110524zurichngs 1st pub20110524zurichngs 1st pub
20110524zurichngs 1st pubsesejun
 
20110214nips2010 read
20110214nips2010 read20110214nips2010 read
20110214nips2010 readsesejun
 
Datamining 9th association_rule.key
Datamining 9th association_rule.keyDatamining 9th association_rule.key
Datamining 9th association_rule.keysesejun
 
Datamining 8th hclustering
Datamining 8th hclusteringDatamining 8th hclustering
Datamining 8th hclusteringsesejun
 
Datamining r 4th
Datamining r 4thDatamining r 4th
Datamining r 4thsesejun
 
Datamining r 3rd
Datamining r 3rdDatamining r 3rd
Datamining r 3rdsesejun
 
Datamining r 2nd
Datamining r 2ndDatamining r 2nd
Datamining r 2ndsesejun
 
Datamining r 1st
Datamining r 1stDatamining r 1st
Datamining r 1stsesejun
 
Datamining 6th svm
Datamining 6th svmDatamining 6th svm
Datamining 6th svmsesejun
 
Datamining 5th knn
Datamining 5th knnDatamining 5th knn
Datamining 5th knnsesejun
 
Datamining 4th adaboost
Datamining 4th adaboostDatamining 4th adaboost
Datamining 4th adaboostsesejun
 
Datamining 3rd naivebayes
Datamining 3rd naivebayesDatamining 3rd naivebayes
Datamining 3rd naivebayessesejun
 
Datamining 2nd decisiontree
Datamining 2nd decisiontreeDatamining 2nd decisiontree
Datamining 2nd decisiontreesesejun
 
Datamining 7th kmeans
Datamining 7th kmeansDatamining 7th kmeans
Datamining 7th kmeanssesejun
 
Datamining 8th Hclustering
Datamining 8th HclusteringDatamining 8th Hclustering
Datamining 8th Hclusteringsesejun
 

Plus de sesejun (20)

RNAseqによる変動遺伝子抽出の統計: A Review
RNAseqによる変動遺伝子抽出の統計: A ReviewRNAseqによる変動遺伝子抽出の統計: A Review
RNAseqによる変動遺伝子抽出の統計: A Review
 
バイオインフォマティクスによる遺伝子発現解析
バイオインフォマティクスによる遺伝子発現解析バイオインフォマティクスによる遺伝子発現解析
バイオインフォマティクスによる遺伝子発現解析
 
次世代シーケンサが求める機械学習
次世代シーケンサが求める機械学習次世代シーケンサが求める機械学習
次世代シーケンサが求める機械学習
 
20110602labseminar pub
20110602labseminar pub20110602labseminar pub
20110602labseminar pub
 
20110524zurichngs 2nd pub
20110524zurichngs 2nd pub20110524zurichngs 2nd pub
20110524zurichngs 2nd pub
 
20110524zurichngs 1st pub
20110524zurichngs 1st pub20110524zurichngs 1st pub
20110524zurichngs 1st pub
 
20110214nips2010 read
20110214nips2010 read20110214nips2010 read
20110214nips2010 read
 
Datamining 9th association_rule.key
Datamining 9th association_rule.keyDatamining 9th association_rule.key
Datamining 9th association_rule.key
 
Datamining 8th hclustering
Datamining 8th hclusteringDatamining 8th hclustering
Datamining 8th hclustering
 
Datamining r 4th
Datamining r 4thDatamining r 4th
Datamining r 4th
 
Datamining r 3rd
Datamining r 3rdDatamining r 3rd
Datamining r 3rd
 
Datamining r 2nd
Datamining r 2ndDatamining r 2nd
Datamining r 2nd
 
Datamining r 1st
Datamining r 1stDatamining r 1st
Datamining r 1st
 
Datamining 6th svm
Datamining 6th svmDatamining 6th svm
Datamining 6th svm
 
Datamining 5th knn
Datamining 5th knnDatamining 5th knn
Datamining 5th knn
 
Datamining 4th adaboost
Datamining 4th adaboostDatamining 4th adaboost
Datamining 4th adaboost
 
Datamining 3rd naivebayes
Datamining 3rd naivebayesDatamining 3rd naivebayes
Datamining 3rd naivebayes
 
Datamining 2nd decisiontree
Datamining 2nd decisiontreeDatamining 2nd decisiontree
Datamining 2nd decisiontree
 
Datamining 7th kmeans
Datamining 7th kmeansDatamining 7th kmeans
Datamining 7th kmeans
 
Datamining 8th Hclustering
Datamining 8th HclusteringDatamining 8th Hclustering
Datamining 8th Hclustering
 

Dernier

Beyond the EU: DORA and NIS 2 Directive's Global Impact
Beyond the EU: DORA and NIS 2 Directive's Global ImpactBeyond the EU: DORA and NIS 2 Directive's Global Impact
Beyond the EU: DORA and NIS 2 Directive's Global ImpactPECB
 
social pharmacy d-pharm 1st year by Pragati K. Mahajan
social pharmacy d-pharm 1st year by Pragati K. Mahajansocial pharmacy d-pharm 1st year by Pragati K. Mahajan
social pharmacy d-pharm 1st year by Pragati K. Mahajanpragatimahajan3
 
BASLIQ CURRENT LOOKBOOK LOOKBOOK(1) (1).pdf
BASLIQ CURRENT LOOKBOOK  LOOKBOOK(1) (1).pdfBASLIQ CURRENT LOOKBOOK  LOOKBOOK(1) (1).pdf
BASLIQ CURRENT LOOKBOOK LOOKBOOK(1) (1).pdfSoniaTolstoy
 
9548086042 for call girls in Indira Nagar with room service
9548086042  for call girls in Indira Nagar  with room service9548086042  for call girls in Indira Nagar  with room service
9548086042 for call girls in Indira Nagar with room servicediscovermytutordmt
 
The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13Steve Thomason
 
Separation of Lanthanides/ Lanthanides and Actinides
Separation of Lanthanides/ Lanthanides and ActinidesSeparation of Lanthanides/ Lanthanides and Actinides
Separation of Lanthanides/ Lanthanides and ActinidesFatimaKhan178732
 
POINT- BIOCHEMISTRY SEM 2 ENZYMES UNIT 5.pptx
POINT- BIOCHEMISTRY SEM 2 ENZYMES UNIT 5.pptxPOINT- BIOCHEMISTRY SEM 2 ENZYMES UNIT 5.pptx
POINT- BIOCHEMISTRY SEM 2 ENZYMES UNIT 5.pptxSayali Powar
 
Kisan Call Centre - To harness potential of ICT in Agriculture by answer farm...
Kisan Call Centre - To harness potential of ICT in Agriculture by answer farm...Kisan Call Centre - To harness potential of ICT in Agriculture by answer farm...
Kisan Call Centre - To harness potential of ICT in Agriculture by answer farm...Krashi Coaching
 
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...fonyou31
 
Disha NEET Physics Guide for classes 11 and 12.pdf
Disha NEET Physics Guide for classes 11 and 12.pdfDisha NEET Physics Guide for classes 11 and 12.pdf
Disha NEET Physics Guide for classes 11 and 12.pdfchloefrazer622
 
Software Engineering Methodologies (overview)
Software Engineering Methodologies (overview)Software Engineering Methodologies (overview)
Software Engineering Methodologies (overview)eniolaolutunde
 
Activity 01 - Artificial Culture (1).pdf
Activity 01 - Artificial Culture (1).pdfActivity 01 - Artificial Culture (1).pdf
Activity 01 - Artificial Culture (1).pdfciinovamais
 
1029 - Danh muc Sach Giao Khoa 10 . pdf
1029 -  Danh muc Sach Giao Khoa 10 . pdf1029 -  Danh muc Sach Giao Khoa 10 . pdf
1029 - Danh muc Sach Giao Khoa 10 . pdfQucHHunhnh
 
The byproduct of sericulture in different industries.pptx
The byproduct of sericulture in different industries.pptxThe byproduct of sericulture in different industries.pptx
The byproduct of sericulture in different industries.pptxShobhayan Kirtania
 
Arihant handbook biology for class 11 .pdf
Arihant handbook biology for class 11 .pdfArihant handbook biology for class 11 .pdf
Arihant handbook biology for class 11 .pdfchloefrazer622
 
A Critique of the Proposed National Education Policy Reform
A Critique of the Proposed National Education Policy ReformA Critique of the Proposed National Education Policy Reform
A Critique of the Proposed National Education Policy ReformChameera Dedduwage
 
Grant Readiness 101 TechSoup and Remy Consulting
Grant Readiness 101 TechSoup and Remy ConsultingGrant Readiness 101 TechSoup and Remy Consulting
Grant Readiness 101 TechSoup and Remy ConsultingTechSoup
 
Interactive Powerpoint_How to Master effective communication
Interactive Powerpoint_How to Master effective communicationInteractive Powerpoint_How to Master effective communication
Interactive Powerpoint_How to Master effective communicationnomboosow
 
Sanyam Choudhary Chemistry practical.pdf
Sanyam Choudhary Chemistry practical.pdfSanyam Choudhary Chemistry practical.pdf
Sanyam Choudhary Chemistry practical.pdfsanyamsingh5019
 

Dernier (20)

Beyond the EU: DORA and NIS 2 Directive's Global Impact
Beyond the EU: DORA and NIS 2 Directive's Global ImpactBeyond the EU: DORA and NIS 2 Directive's Global Impact
Beyond the EU: DORA and NIS 2 Directive's Global Impact
 
social pharmacy d-pharm 1st year by Pragati K. Mahajan
social pharmacy d-pharm 1st year by Pragati K. Mahajansocial pharmacy d-pharm 1st year by Pragati K. Mahajan
social pharmacy d-pharm 1st year by Pragati K. Mahajan
 
BASLIQ CURRENT LOOKBOOK LOOKBOOK(1) (1).pdf
BASLIQ CURRENT LOOKBOOK  LOOKBOOK(1) (1).pdfBASLIQ CURRENT LOOKBOOK  LOOKBOOK(1) (1).pdf
BASLIQ CURRENT LOOKBOOK LOOKBOOK(1) (1).pdf
 
9548086042 for call girls in Indira Nagar with room service
9548086042  for call girls in Indira Nagar  with room service9548086042  for call girls in Indira Nagar  with room service
9548086042 for call girls in Indira Nagar with room service
 
The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13
 
Separation of Lanthanides/ Lanthanides and Actinides
Separation of Lanthanides/ Lanthanides and ActinidesSeparation of Lanthanides/ Lanthanides and Actinides
Separation of Lanthanides/ Lanthanides and Actinides
 
POINT- BIOCHEMISTRY SEM 2 ENZYMES UNIT 5.pptx
POINT- BIOCHEMISTRY SEM 2 ENZYMES UNIT 5.pptxPOINT- BIOCHEMISTRY SEM 2 ENZYMES UNIT 5.pptx
POINT- BIOCHEMISTRY SEM 2 ENZYMES UNIT 5.pptx
 
Kisan Call Centre - To harness potential of ICT in Agriculture by answer farm...
Kisan Call Centre - To harness potential of ICT in Agriculture by answer farm...Kisan Call Centre - To harness potential of ICT in Agriculture by answer farm...
Kisan Call Centre - To harness potential of ICT in Agriculture by answer farm...
 
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
 
Disha NEET Physics Guide for classes 11 and 12.pdf
Disha NEET Physics Guide for classes 11 and 12.pdfDisha NEET Physics Guide for classes 11 and 12.pdf
Disha NEET Physics Guide for classes 11 and 12.pdf
 
Software Engineering Methodologies (overview)
Software Engineering Methodologies (overview)Software Engineering Methodologies (overview)
Software Engineering Methodologies (overview)
 
Código Creativo y Arte de Software | Unidad 1
Código Creativo y Arte de Software | Unidad 1Código Creativo y Arte de Software | Unidad 1
Código Creativo y Arte de Software | Unidad 1
 
Activity 01 - Artificial Culture (1).pdf
Activity 01 - Artificial Culture (1).pdfActivity 01 - Artificial Culture (1).pdf
Activity 01 - Artificial Culture (1).pdf
 
1029 - Danh muc Sach Giao Khoa 10 . pdf
1029 -  Danh muc Sach Giao Khoa 10 . pdf1029 -  Danh muc Sach Giao Khoa 10 . pdf
1029 - Danh muc Sach Giao Khoa 10 . pdf
 
The byproduct of sericulture in different industries.pptx
The byproduct of sericulture in different industries.pptxThe byproduct of sericulture in different industries.pptx
The byproduct of sericulture in different industries.pptx
 
Arihant handbook biology for class 11 .pdf
Arihant handbook biology for class 11 .pdfArihant handbook biology for class 11 .pdf
Arihant handbook biology for class 11 .pdf
 
A Critique of the Proposed National Education Policy Reform
A Critique of the Proposed National Education Policy ReformA Critique of the Proposed National Education Policy Reform
A Critique of the Proposed National Education Policy Reform
 
Grant Readiness 101 TechSoup and Remy Consulting
Grant Readiness 101 TechSoup and Remy ConsultingGrant Readiness 101 TechSoup and Remy Consulting
Grant Readiness 101 TechSoup and Remy Consulting
 
Interactive Powerpoint_How to Master effective communication
Interactive Powerpoint_How to Master effective communicationInteractive Powerpoint_How to Master effective communication
Interactive Powerpoint_How to Master effective communication
 
Sanyam Choudhary Chemistry practical.pdf
Sanyam Choudhary Chemistry practical.pdfSanyam Choudhary Chemistry practical.pdf
Sanyam Choudhary Chemistry practical.pdf
 

Molecular function and domain of rhodopsin-like receptor

  • 1. 20 DB 2008/08/07 kaneko.satoko(at)ocha.ac.jp
  • 2.
  • 3. molecular_function [GO:0003674] molecular transducer activity [GO:0060089] signal transducer activity [GO:0004871] receptor activity [GO:0004872] transmembrane receptor activity [GO:0004888] G-protein coupled receptor activity [GO:0004930] rhodopsin-like receptor activity [GO:0001584]
  • 4.
  • 5. 22.66kb Reverse strand 8 exons, CDS 1446bp (481a.a.)
  • 6.
  • 7.
  • 8. (5) processed (pseudo)gene, unprocessed (pseudo)gene a a' unprocessed gene duplicated gene a mRNA splicing a'' processed gene pseudogene premature stop codon (insertion) (deletion)
  • 9. ID ID
  • 10.
  • 11.
  • 12.
  • 13. 1 [apple mark+C] 2 CotEditor [apple mark+V] makorin.fasta blat 3 BLAST
  • 14. 1 [apple mark+V] 2 Mus musculus dna database 3 Search Tool BLAT RUN BLAT
  • 15.
  • 16. [apple mark+A] [apple mark+C] CotEditor [apple mark +C] makorin.blat
  • 17.
  • 18. [Alignment Locations vs. Karyotype] [Alignment Locations vs. Query] query [Alignment Summary] query
  • 19. query
  • 20.
  • 21.
  • 22.
  • 23.
  • 24. (6) BLAST (Basic Local Alignment Search Tool) alignment Arg Ser Val Thr Ser Gly Tyr Val Arg 5'-tacgtcaggta-3' 3'-atgcagtccat-5' Met Gln Ser Cys Ser Pro Ala Val His BLAT (Blast Like Alignment Tool) query/database 4,11(amino acid, DNA)-mer EST