Course material for aCSIR Ph.D Programs

1. Sucheta Tripathy,

2.  Mid term:
◦ 20 marks
 14 marks
 8 for evaluations
 6 for test
 6 marks
Meets the character specification (+1)
Answers the Question (+1)
Originality (+1)
Clarity/perspective (+1)
Copy from someone/internet (-1)

3.  Encyclopedia of life (www.eol.org )
 Education + EOL (http://education.eol.org )
 http://indiabiodiversity.org

4.  The Encyclopedia of Life is a collaborative
effort among scientist and the general public
to bring information together about all 1.9
million named and known species, in a
common format, freely available on the
internet.

8. 17 countries out of XXX contains 70% biodiversity: “Megadiverse”

9. India Bio diversity

11. The Bar Code of Life (BOLD Systems)
International Barcode of Life Projects
Data Portal; Barcode Cluster; Data Collection
V3 is released: V2 will be maintained till 2012 Dec.

12.  Animal Identification
◦ COI (cytochrome C oxidase subunit 1)
 Fungi Identification
◦ (ITS – internal transcribed spacer)
 Plant Identification
◦ Rbcl (ribulose bisphosphate carboxylase)
◦ Mat k (maturase k)

14. http://www.youtube.com/watch?v=ZImiXgU6bCk&feature=related

15. •Genbank
•Entrez
•CoreNucleotide
•DbEST
•dbGSS
•NCBI-eutilities

16. Data Retrieval and deposition
schemes
•NCBI-eutilities
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed
&term=cancer&reldate=60&datetype=edat&retmax=100&usehistory=
y
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleoti
de&term=biomol+trna[prop]
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=protein
&term=70000:90000[molecular+weight]
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=struc
ture&id=19923,12120
Ref:
http://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch

17. Data Retrieval and deposition
schemes
BankIt : Single or a simple group of sequences: web based
Sequin : Simple to complex submission ; < 10,000 sequences
Tbl2Asn : Template File; Sequence file; Feature Table