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Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Marcalyc: XML JATS Markup System
A tool to approach and preserve knowledge for everyone
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Origins: Identifying the need of
Latin American and Caribbean
Social Sciences and Humanities
become more visible
Emergence: An iniciative
founded by the research
group “Science Communication
and Dissemination”, from the
Autonomous University of the
State of Mexico
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Origins: The need to build a
communication infrastructure
thinking about sustainability and
digital publishing technology for
all scientific knowledge
Emergence: The initiative
emerged as the result of
Redalyc’s experience in order to
build a communication system
for Latin America’s and the
Global South’s journals as a
response to the financial
sustainability crisis
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
A little bit of background on XML
• It is not a markup language.
• It is a meta-markup language.
• XML has a compound of simple rules.
• It provides a uniform method to describe and mix structured data
• It describes the structure and semantics, not the format.
• EXtensible Markup Language
SGML
1986
Electronic
Publishing
Challenges
1991
Web
Presentation
Challenges 1996
Data
Presentation
Challenges
HTML
SGML
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
XML File
• It comprises the following elements:
Closing tag
Name of the element
<name> James </name>
Content
Opening tag
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
• The content is set apart from any
presentation related notion.
• The XML is an International Standard
independent to the platforms.
• It is also an open format that can be
interpreted by any software.
• The XML can also be exchanged between
systems that might not have been designed
for that specific purpose.
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
• JATS (Journal Article Tag Suite) is a technical standard. An initiative
that defines an XML formatting to describe structure, semantics, and
metadata for digital scientific content.
• It provides a set of elements and XML attributions to describe graphic
and textual content for journal articles.
• JATS is a technical standard based on the National Information
Standards Organization (NISO) currently on versión Z39.96 2012 (ISO
z39.96-2015 (JATS 1.1; Current Standard).
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
•An online tool for the XML tagging of articles that
aligns with JATS standards. A free of charge
service offered to the OA journals indexed in
Redalyc.
•A friendly and intuitive software that doesn’t
require advanced technical knowledge, for the
editors of scientific journals and authors to use.
•Redalyc keeps upgrading the XML JATS
Marcalyc tool, offered to more than 700 journals .
Currently Marcalyc is under its 2.0.14 version
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Some of the Advantages of
Implementing XML-JATS
are:
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Visualization and ubiquity of scientific content, a
new reading experience.
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Digital Preservation
• Digital Preservation consists of a series of processes destined
to gain permanent accessibility to digital products. To guarantee
this it is necessary to find ways of representing what was
originally presented to users, through a set of equipment and
software that can process the data. (UNESCO)
• Control the content using structured metadata and other
documents that facilitate access and help throughout the
preservation process.
• Any XML article is expected to be more durable than other
proprietary program products, which makes them useful for
preservation.
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Information recovery and interoperability
• Without “smart” content
it’s imposible to exploit
smart search engines
• Finding the right content
• Obtaining condensed
information
• Having a more in-depth
web search
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
<article>
According to NCBI
(2015)
It contains
<front> <body> <back> <floats-group>
<response> or
<sub-article>
Contains metadata, from
both the magazine and
the article
Graphic and textual
content corresponding to
the scientific article
References. appendix.
acknowledgements.
glossary.
Are used frequently
XML-JATS Structure
Container
element for
floating objects
(figures, tables,
text boxes,
graphics, etc.)
Reply, response,
or commentary
concerning the
journal article.
263 tags and 135 atributes
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
XML-JATS: markup process
The tagging XML JATS process requires it to be done in the following order:
Front Back Body
1º 2º 3º
This is because all the information that is identified on the references and footnotes (part
of the Back) is needed to tag the quotes found in the article.
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
<front>
<journal-meta><article-meta>
contains
Información de la
revista:
• Title.
• Abbreviated
Journal Title
• ISSN.
• Publisher.
Information about the Article:
• Article title.
• Translated title.
• Name
• Affiliation.
• Author Comments.
• Abstract.
• Keywords.
• Volume Number.
• Issue.
• Páge Ranges.
• History.
• License Informations.
• Uniform Resource
Identifier.
• Funding.
• Related Article
Information
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
<back>
contains
<ack>
Acknowledgments
<fn-group>
Footnote Group
<app-group>
Appendix Group
<glossary>
Glossary
Elements List
<ref-list>
Reference List
(Bibliographic)
Its used to
To provide functionalities to
the viewer, in addition to
providing the necessary data
for bibliometric analysis.
Contains the information for each
reference, both the original and
detailed. It holds more tags that are
used to describe the content of each
reference, for example:
• Surname.
• Given (First) Names.
• Article Title.
• Source (Journal Title).
• Chapter Title in a Citation.
• Source (Book title).
• Year, Volume, Issue and Page
Ranges.
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
<body>
contains
<sec>
Section
contains
<title>
Title of the section
<p>
Paragraph
• Text.
• Bibliographic references, Figures, tables,
equations, etc.
• URLs.
• List.
• Graphics contained within the text.
• Quotations.
<sig-block>
Signature Block
used as The main textual portion of the
document that conveys the narrative
content, it is used for visualizing tables,
images, equations, and every other
piece of information that corresponds
to the article itself.
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Article Viewer
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Mobile Viewer
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
HTML
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
ePub
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
PDF
Non-profitacademy-ownedOpenAccess
Marcalyc - XML JATS Markup System
Marcalyc: An XML JATS Markup System
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Marcalyc: XML JATS Markup System

  • 1. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Marcalyc: XML JATS Markup System A tool to approach and preserve knowledge for everyone
  • 2. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Origins: Identifying the need of Latin American and Caribbean Social Sciences and Humanities become more visible Emergence: An iniciative founded by the research group “Science Communication and Dissemination”, from the Autonomous University of the State of Mexico
  • 3. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Origins: The need to build a communication infrastructure thinking about sustainability and digital publishing technology for all scientific knowledge Emergence: The initiative emerged as the result of Redalyc’s experience in order to build a communication system for Latin America’s and the Global South’s journals as a response to the financial sustainability crisis
  • 4. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System A little bit of background on XML • It is not a markup language. • It is a meta-markup language. • XML has a compound of simple rules. • It provides a uniform method to describe and mix structured data • It describes the structure and semantics, not the format. • EXtensible Markup Language SGML 1986 Electronic Publishing Challenges 1991 Web Presentation Challenges 1996 Data Presentation Challenges HTML SGML
  • 5. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System XML File • It comprises the following elements: Closing tag Name of the element <name> James </name> Content Opening tag
  • 6. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System • The content is set apart from any presentation related notion. • The XML is an International Standard independent to the platforms. • It is also an open format that can be interpreted by any software. • The XML can also be exchanged between systems that might not have been designed for that specific purpose.
  • 7. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System • JATS (Journal Article Tag Suite) is a technical standard. An initiative that defines an XML formatting to describe structure, semantics, and metadata for digital scientific content. • It provides a set of elements and XML attributions to describe graphic and textual content for journal articles. • JATS is a technical standard based on the National Information Standards Organization (NISO) currently on versión Z39.96 2012 (ISO z39.96-2015 (JATS 1.1; Current Standard).
  • 9. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System •An online tool for the XML tagging of articles that aligns with JATS standards. A free of charge service offered to the OA journals indexed in Redalyc. •A friendly and intuitive software that doesn’t require advanced technical knowledge, for the editors of scientific journals and authors to use. •Redalyc keeps upgrading the XML JATS Marcalyc tool, offered to more than 700 journals . Currently Marcalyc is under its 2.0.14 version
  • 10. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Some of the Advantages of Implementing XML-JATS are:
  • 11. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Visualization and ubiquity of scientific content, a new reading experience.
  • 12. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Digital Preservation • Digital Preservation consists of a series of processes destined to gain permanent accessibility to digital products. To guarantee this it is necessary to find ways of representing what was originally presented to users, through a set of equipment and software that can process the data. (UNESCO) • Control the content using structured metadata and other documents that facilitate access and help throughout the preservation process. • Any XML article is expected to be more durable than other proprietary program products, which makes them useful for preservation.
  • 13. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Information recovery and interoperability • Without “smart” content it’s imposible to exploit smart search engines • Finding the right content • Obtaining condensed information • Having a more in-depth web search
  • 15. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System <article> According to NCBI (2015) It contains <front> <body> <back> <floats-group> <response> or <sub-article> Contains metadata, from both the magazine and the article Graphic and textual content corresponding to the scientific article References. appendix. acknowledgements. glossary. Are used frequently XML-JATS Structure Container element for floating objects (figures, tables, text boxes, graphics, etc.) Reply, response, or commentary concerning the journal article. 263 tags and 135 atributes
  • 16. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System XML-JATS: markup process The tagging XML JATS process requires it to be done in the following order: Front Back Body 1º 2º 3º This is because all the information that is identified on the references and footnotes (part of the Back) is needed to tag the quotes found in the article.
  • 17. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System <front> <journal-meta><article-meta> contains Información de la revista: • Title. • Abbreviated Journal Title • ISSN. • Publisher. Information about the Article: • Article title. • Translated title. • Name • Affiliation. • Author Comments. • Abstract. • Keywords. • Volume Number. • Issue. • Páge Ranges. • History. • License Informations. • Uniform Resource Identifier. • Funding. • Related Article Information
  • 18. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System <back> contains <ack> Acknowledgments <fn-group> Footnote Group <app-group> Appendix Group <glossary> Glossary Elements List <ref-list> Reference List (Bibliographic) Its used to To provide functionalities to the viewer, in addition to providing the necessary data for bibliometric analysis. Contains the information for each reference, both the original and detailed. It holds more tags that are used to describe the content of each reference, for example: • Surname. • Given (First) Names. • Article Title. • Source (Journal Title). • Chapter Title in a Citation. • Source (Book title). • Year, Volume, Issue and Page Ranges.
  • 19. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System <body> contains <sec> Section contains <title> Title of the section <p> Paragraph • Text. • Bibliographic references, Figures, tables, equations, etc. • URLs. • List. • Graphics contained within the text. • Quotations. <sig-block> Signature Block used as The main textual portion of the document that conveys the narrative content, it is used for visualizing tables, images, equations, and every other piece of information that corresponds to the article itself.
  • 20. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Article Viewer
  • 21. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Mobile Viewer
  • 25. Non-profitacademy-ownedOpenAccess Marcalyc - XML JATS Markup System Marcalyc: An XML JATS Markup System ¡ Thank you !