1. Amol Ashok KundeAmol Ashok Kunde
68 RossBrook Model farm Road, Cork
Mobile: +353-899826285
E-Mail: amol.kunde@mycit.ie, saikunde2010@gmail.com
Seeking to work in challenging area of neurologySeeking to work in challenging area of neurology development of new computational methods
for structure-based design, in docking and lead optimization, and prediction of drug binding
kinetics, tumor detection and diagnosis
Profile Highlights
 Masters in Computational biology with 1.5 years of research experience
 Experience in molecular biology techniques, cell based assay systems
 Experience in using drug discovery software like Schrodinger, discovery studio, MOE, Sybel
 Experience of working Assistant manager for 4 years
 Experience in working on Unix based system and obtained certification from Linux academy
Academic programme and Certificate program
 Designing a Automated Pipeline for phylogenetic analysis of clinical isolates, Cork , Ireland
 Brain Tumor Classification using wavelet and Texture based Neural Network
 Analysis of Brain Tumor Detection Techniques through Filtering and Segmentation in Matlab
 Insilico drug Designing to inhibit entry of Ebola virus through Nieman Pick- C1 Protein, Mumbai
 Microarray based gene expression profiling on the role of neuropeptide s and neuropeptide s
receptor 1 in asthma, Cochin, India
 Insilico drug designing targeted to COCH gene in LCCI domain of human autoimmune inner ear
disease, Hyderabad, India
 Docking Analysis of insulin-like growth factor 1 receptor for identification of role in cancer
development , Hyderabad, India
 Experience working on design computer aided diagnosis algorithm to increase accuracy of brain
tumor detection and classification
Technical Skills And Laboratory Techniques
 Computer Skills
OS: Window7/Window8/XP/NT, Unix/Linux/Ubuntu/ Redhat
Programming Language: Phyton, BioPython, Perl, Java, Vb.net, R-programming, MATLAB
MS-Office suite
 Microbiology Skills
Aseptic and Sterile Technique, Optical microscopy, Bacterial staining, enumeration and
identification of bacteria, use of biological safety cabinets, media and buffer preparation, water
sample Analysis by membrane filtration

2.  Biochemistry and Cell Molecular Biology skills
DNA extraction, Plasmid DNA preparation, restriction enzyme digests, PCR, agarose gel
electrophoresis, SDS-PAGE, Colonies preparation of bacteria.
 Bioinformatics softwares & Tools
Working Knowledge on all major Bioinformatics Software ,Structure database & analysis tools
Molecular Visualization Software: rasmol, pymol, Cn3d, VMD, SwissPdbviewer, MATLAB
 Molecular modelling & Docking Software : Modeller, Autodock3, Accelrys Discovery studio
4.1, sybel. Molecular operating Enviortment (MOE), NAMD/VMD
Genetic Software : Power marker, Arlequin.
Phylogenetic Analysis: RAxML, MrBayes, PhyML, Phylip, Ape
Biostatistics software : SPSS 17, R- programming language
 Image processing software: ITK –Snap 3.0, signal processing in NMR(SPIN), Imaging in
MATLAB
ACADEMIA
Timeline Course Details
September 2013 –Feb 2015
(Honors)
M.Sc in Computational Biology (1 Year, Level-9, Research Masters), CIT,
Cork, Ireland.
Thesis title: Designing pipeline for phylogenetic analysis of Clinical isolates
Key Modules: Strutural Biology, molecular biology, statistics,python
September 2009 – August
2013
First class honours
Graduate in Bioinformatics(4 Years, Level8) ,Padmashree DY Patil
University of Biotechnology & Bioinformatics, Navi Mumbai
Thesis title: Insilico drug designing to inhibit Ebola through Nieman –pick C1
protein
Key Modules: Proteomics, Perl, Java, drug designing, system biology,
Matlab, pharmacology, genetic engineering, pharmacology
INDUSTRIAL EXPERIENCE

3.  Worked as Bioinformatics Programmer in INSILICO Labs (6 months full time), Cork, Ireland
 Worked as bioinformatics Research Associate in Microsatbiolabs(8 months full time), Navi Mumbai
 Worked as part time tutor in Cork Institute of Technology(3 months), Cork ,Ireland
 Worked as Assistant Manager in Deep Enterprises (4 years), Mumbai
Research Experience
JOB RESPONSIBILITIES As Bioinformatics Programmer, Nsilico Biotech labs, Cork, Ireland
(June 2014-Jan2015)
 Responsibility for developing pipeline for Phylogenetics analysis.
 Extracting sample ,Sequencing, Blast, Extracting 16sRna from provided sequences.
 Running a sample in Phylogenetics software , Recording time duration, E-scores obtained
 Predicting results on basis of obtained results ,Commenting on obtain results
 Reporting results on daily scrum meetings.
 Designing a code for novel automated pipeline for phylogenetic analysis on ubuntu OS system.
 Worked on Simplicity software dream project of Nsilico labs
 Error handling, Debugging, Evaluating Codes, Updating on daily basis
 Taking technical care of lab such as maintain computers in labs
JOB RESPONSIBILITIES As Bioinformatics Research Associate, Microsatbiolab, Navi Mumbai
( Jan2013-August2013)
 Worked as lab assistant responsibility for maintaining computers, Rectifying technical issue in
Computer system.
 Designing a novel Insilico drug for inhibition of Ebola Viruses.
 Extracting a sample of Ebola viruse from join venture company.
 Sequencing samples, blasting, protein structure predication.
 Running the sample obtained from company on different drug modelling suite.
 Worked on Discovery studio 3.1,4..1 2 for making drug analogues .
 Worked on sybel & Molecular operating Envirotment for designing drug analogues & Scaffold
designing.
 AMED , Toxicity testing of scaffold designed.
 Performing Pharmacophore using Ligand Scout software.
 Performing QSAR
 Presenting weekly report to the faculty member , Updating work after listening to improvement
made by faculty member.
JOB RESPONSIBILITIES As Assistant Manager Deep Enterprises, Mumbai
(Jan2005-August2009)
 Full Responsibilty of workshop, mainting a stocks, Products.
 Daily scrum for noting down progress,issue in work shop.
 Reporting issue to Manager on daily basis.
 Preparation of final COA (Certificate of Analysis) before batch release..
 Review and Optimize Quality Management System (QMS) in Manufacturing Area.

4.  Role to monitor the Quality of Product & maintain the protocols
 Responsibility for Motivating,training & development of Fresh Candidates
 Marketing of a Company Product & Plans
 Optimization of Risk Management System.
Certification
 Successful Completion of Training course Linux + LPIC Level 1 Exam 101.
 Successful Completion of Training course Mastering The Linux Command line Line.
 Microarray based gene expression profiling on the role of neuropeptide s and neuropeptide s receptor 1
in asthma.
 Insilico drug designing targeted to COCH gene in LCCI domain of human autoimmune inner ear
disease
.
EXTRACURRICULAR ACTIVITIES
Gold Medalist at State Level in “Hindi Competition Examination “ held By Hindi Examination Control
Board Maharastra .
• Team Leader as a Volunteer DY PATIL SPORTS CLUB, NAVI MUMBAI.
• Captain of Bharti Vidyapeeth Cricket School Team for 3 years.
• Won the best scout & guide student of the year
International Conference & Poster Presentation
 Collaborative European Research Conference(CERC) October 2013 , CIT, Cork
 11th
International Conference On Intergration Of Artificial Intellegence(AI) & Operation Research(OR),
UCC, Cork
 Poster Presentation on “System and Synthetic Approaches for therapeutic intervention against
Leishmania”, National center for cell science,Pune
Activities And Intersest
 Travelling across Country(India) explore culture heritage, Food cuisine
 Hiking and wilderness camping
 Reading(mythological, hindu Vedas, mysterious collections)
REFERENCES
Name: Dr.Roy Sleator
Office Add : C153 Cork Institute of Technology

5. Telephone : (353)-21-4335405
Email: roy.sleator@cit.ie
Job Title: Head of Biological Department & Co Founder NSilico Life Science, Cork, Ireland
Name: Dr. Helen O shea
Office Add:C247L Cork Institute of Technology
Telephone: (353)-21-4335401
Email: helen.oshea@cit.ie
Job Title: Lecturer & Researcher Investigator, CIT, Ireland
Name: Dr Paul Walsh
Office :Melbourne Building CIT Campus, Bishoptown , Cork, Ireland
Email: paul.walsh@nsilico.com , Tel:353-21-4335572
Job Title: Managing Director, NSilico Life Science Ltd

6. Telephone : (353)-21-4335405
Email: roy.sleator@cit.ie
Job Title: Head of Biological Department & Co Founder NSilico Life Science, Cork, Ireland
Name: Dr. Helen O shea
Office Add:C247L Cork Institute of Technology
Telephone: (353)-21-4335401
Email: helen.oshea@cit.ie
Job Title: Lecturer & Researcher Investigator, CIT, Ireland
Name: Dr Paul Walsh
Office :Melbourne Building CIT Campus, Bishoptown , Cork, Ireland
Email: paul.walsh@nsilico.com , Tel:353-21-4335572
Job Title: Managing Director, NSilico Life Science Ltd