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Science in the open
What can be done? What should be done?
Science in the open
What can be done? What should be d?
                               a done?
                        it le
                m ig ht
          he re
     nd w
   A
About me.
I live in Bath




http://www.flickr.com/photos/andypowe11/3915450391
I work at RAL
I work for STFC...
But
The opinions expressed in this talk are
the personal views of the speaker
given as a private citizen and should
not unders any circumstances be
taken of as indicative of STFC, RCUK,
or government policy or of any
discussions within these organizations
of future policy....
I get up in the morning




http://www.flickr.com/photos/andypowe11/3251538402
...and catch a train




http://www.flickr.com/photos/mattbuck007/3710451826
...and a bus
...to get to work
I work on...



Wikimedia Commons                               Wikimedia Commons
Succinate_Dehydrogenase_1YQ3_and_Membrane.png   MGMT BDNA_1T38.png
...and get to do cool stuff
Mixture of small-lab work...
...and big facility experiments
Lots of reading...




http://www.flickr.com/photos/loty/326761635
...meetings...




http://www.flickr.com/photos/amagill/38961674
...too much travel...
http://www.flickr.com/photos/22819720@N02/2306780847
Why?
Why do they pay?
Why do they pay?




http://www.flickr.com/photos/mararie/3313582639/ CC-BY-SA
Why do they pay?
        w e



http://www.flickr.com/photos/mararie/3313582639/ CC-BY-SA
Cures...




http://www.flickr.com/photos/59334544@N00/2322167178
Prestige...



http://www.flickr.com/photos/natematias/310642831 CC-BY-SA
http://www.flickr.com/photos/penmachine/2109311458/
                                                     ...excitement
Why do I do it?
Mortgage...


http://www.flickr.com/photos/joeshlabotnik/2143212474 CC-BY
...curiosity...


http://www.flickr.com/photos/emiliodelprado/225161313
Fun!




http://www.flickr.com/photos/wwworks/2908834853
This is a privilege.
Not a right.
http://www.flickr.com/photos/jamescridland/3947254236
But how?




http://www.flickr.com/photos/valeriebb/2248744703
But sometimes...
...formal publication




http://flickr.com/photos/nicmcphee/2756494307/
http://www.flickr.com/photos/siberianluck/3450937497
                                                      ...is overkill...
An example
9:00 am, 4 September 2008
http://usefulchem.wikispaces.com/Exp207




                                          Flickr tag: UC207
7:36	
  pm,	
  4	
  September	
  2008
Publishing is easy...
http://www.flickr.com/photos/cybershotking/329184504/
...data, documents, media...
Broadcasting is easy...
...sharing is harder




http://www.flickr.com/photos/missrogue/107787363
Interoperability is the key...




http://www.flickr.com/photos/sfllaw/222795669
Technical interoperability...




                                ...formats, vocabularies
http://www.flickr.com/photos/jeffsand/3871415191
Legal interoperability...
http://www.flickr.com/photos/spunter/3239363956
Legal interoperability...
http://www.flickr.com/photos/spunter/3239363956
Legal interoperability...
http://www.flickr.com/photos/spunter/3239363956
Technical     Legal
 interop.    interop.



      Process
  interoperability
Systems need to work
with existing process
...and people
A short story...
MyTea project:
                       A fully semantic
                       laboratory record
                       for chemistry
http://mytea.org.uk/
But not molecular biology
General




                    MyTea
Specific

     Unstructured   Structured
General


                    ?

                        MyTea
Specific

     Unstructured       Structured
General
            Blogs


                    ?

                        MyTea
Specific

     Unstructured       Structured
A recipe for chaos?




http://www.flickr.com/photos/benuski/3452291541
Yes to start with...
But then something
interesting happened...
Templates   Metadata
Self assembling ontology?
               Sequence ontology:
               SO:0000696 “oligo”
               SO:0000155 “plasmid”

                         ...but...

               SO:0000006 “PCR product”
                           or
               SO:0000412 “rest. fragment”?
Capture first...




http://www.flickr.com/photos/furtwangl/3851841424
Dionaea muscipula                 Musca domestica
                     chomped on




                    ...then add structure
Map our process onto
 agreed vocabularies
...when we tell the story




http://www.flickr.com/photos/tnarik/366393127
Machines do structure

http://www.flickr.com/photos/yeowatzup/2463225297
Machines need structure

http://www.flickr.com/photos/yeowatzup/2463225297
....humans tell stories
Tools that capture the
  pieces of the research
record as we create them
Tools that capture
  structure as we choose
the pieces for our narrative
Tools that exploit structure
that is already in the process
What can we do?
Technically able to share
http://www.flickr.com/photos/yourdon/3088582622
...the whole record

http://commons.wikimedia.org/wiki/File:AGBell_Notebook.jpg
...but will we want to share?




http://www.flickr.com/photos/66164549@N00/2162663143
No.
The mainstream
response looks like
http://flickr.com/photos/zanotti/314391903/
...or...
http://www.flickr.com/photos/tammra/283690669/
...leading to a lot of...
http://www.flickr.com/photos/tranchis/3708549622
How do we persuade?




http://www.flickr.com/photos/mattymatt/3017263513
Actually I’m not worried...
Submissions to Genbank
100,000,000,000


 75,000,000,000


 50,000,000,000


 25,000,000,000


             0
              1982   1986   1990   1994   1998   2002   2006
Average Capacity of Human Scientist
5.00


3.75


2.50


1.25


  0
  1982     1986   1990   1994   1998   2002   2006
The human scientist
    (that’s me)
 Does. Not. Scale.
The web scales
Government doesn’t scale
http://www.flickr.com/photos/amagill/38961674




            ...research groups don’t scale
The web scales
Scientists will need to be
web-native just to survive
Web native means connected




Bollen J, Van de Sompel H, Hagberg A, Bettencourt L, Chute R, et al. (2009) Clickstream Data Yields High-
Resolution Maps of Science. PLoS ONE 4(3): e4803. doi:10.1371/journal.pone.0004803
which means sharing...




http://www.flickr.com/photos/doubledareya/2443303399
“I propose the seeming paradox
that in science, private property is
     established by having its
 substance freely given to others
who might want to make use of it.”

         Merton (1988) ISIS 79:606
Not just papers
And if the objects are not
  open and available?
Open content builds
   the network
The network is the only
 way we will keep up
If we build tools that help
scientists build networks...
… then (more) open
                                   research will follow




http://flickr.com/photos/good-karma/710068054/
Cameron.Neylon@stfc.ac.uk
http://blog.openwetware.org/scienceintheopen
http://slideshare.net/cameronneylon
Twitter:     @cameronneylon
Friendfeed: cameronneylon


Thanks to:
                             Text
Sciencetwists, Friendfeeders, and the wider online
community for ideas, criticism, and conversations.


Deepak Singh, Larry Lessig, Andy Powell, and
John Wilbanks for presentation inspiration.


Flickr and Wikimedia Commons for images
Science in the Open

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Science in the Open